Gene annotation
Transcriptome id Sobic.004G248900.1
Synonym Sb04g028870
Functional annotation 50S ribosomal protein L17, putative, expressed
UniProt C5XZB9
Pfam PF01196
Panther DB PTHR14413
NCBI CDD KOG3280; Mitochondrial/chloroplast ribosomal protein L17
KEGG Orthology K02879; RP-L17, MRPL17, large subunit ribosomal protein L17
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT5G64650 : Ribosomal protein L17 family protein
RAP-DB (Rice) LOC_Os01g62210.1 : 50S ribosomal protein L17, putative, expressed
MaizeGDB (Corn) Zm00025a039691
Brachypodium KQK05895 , KQK10501
Barley HORVU1Hr1G072170.25 , HORVU1Hr1G072170.27 , HORVU1Hr1G072170.31 , HORVU1Hr1G072170.36 , HORVU1Hr1G072170.34 , HORVU1Hr1G072170.35 , HORVU3Hr1G086630.4 , HORVU3Hr1G086630.5 , HORVU3Hr1G086630.6 , HORVU3Hr1G086630.7 , HORVU3Hr1G086630.1 , HORVU3Hr1G086630.2 , HORVU3Hr1G086630.3 , HORVU3Hr1G086630.8 , HORVU1Hr1G072170.7
Wheat TraesCS3A02G357200 , TraesCS3D02G351100 , TraesCS3D02G351100 , TraesCS1B02G294700 , TraesCS1D02G284500 , TraesCS3B02G389800 , TraesCS1A02G285500
Populus -


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cDNA sequences
Sobic.004G248900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G105500 expressed protein -
2 Sobic.005G191600 OsSigP7 - Putative Type I Signal Peptidase homologue@ employs a putative Ser/Lys catalytic dyad, expressed K09647: mitochondrial inner membrane protease subunit 1
3 Sobic.001G129400 ribosomal protein-related, putative, expressed K02970: RP-S21, MRPS21, small subunit ribosomal protein S21
4 Sobic.007G143000 ribosomal protein S17, putative, expressed K02961: RP-S17, MRPS17, small subunit ribosomal protein S17
5 Sobic.001G060300 expressed protein -
6 Sobic.010G013900 DAG protein, chloroplast precursor, putative, expressed -
7 Sobic.001G117400 DNA-directed RNA polymerase I subunit RPA12, putative, expressed K03000: RPA12, DNA-directed RNA polymerase I subunit RPA12
8 Sobic.003G326900 expressed protein -
9 Sobic.001G404100 expressed protein K03237: translation initiation factor 2 subunit 1
10 Sobic.009G168000 selT-like protein precursor, putative, expressed -
11 Sobic.001G096100 DNA-binding protein-related, putative, expressed K07466: RFA1, RPA1, replication factor A1
12 Sobic.006G020900 phosphoglycerate mutase, putative, expressed -
13 Sobic.001G451901 - -
14 Sobic.008G103900 glycine-rich RNA-binding protein 7, putative, expressed K12741: heterogeneous nuclear ribonucleoprotein A1/A3
15 Sobic.009G130400 DNA-directed RNA polymerase II subunit RPB7, putative, expressed K03015: RPB7, DNA-directed RNA polymerase II subunit RPB7
16 Sobic.004G124100 EMB1303, putative, expressed -
17 Sobic.006G281200 csAtPR5, putative, expressed -
18 Sobic.007G061400 heat shock protein DnaJ, putative, expressed K09539: DnaJ homolog subfamily C member 19
19 Sobic.002G341800 eukaryotic translation initiation factor 2 subunit gamma, putative, expressed K03242: translation initiation factor 2 subunit 3
20 Sobic.010G038700 expressed protein -


Gene co-expression network
sample Sobic004G248900 Sobic004G248900 Sobic005G105500 Sobic005G105500 Sobic004G248900--Sobic005G105500 Sobic005G191600 Sobic005G191600 Sobic004G248900--Sobic005G191600 Sobic001G129400 Sobic001G129400 Sobic004G248900--Sobic001G129400 Sobic007G143000 Sobic007G143000 Sobic004G248900--Sobic007G143000 Sobic001G060300 Sobic001G060300 Sobic004G248900--Sobic001G060300 Sobic010G013900 Sobic010G013900 Sobic004G248900--Sobic010G013900 Sobic001G117400 Sobic001G117400 Sobic004G248900--Sobic001G117400 Sobic003G326900 Sobic003G326900 Sobic004G248900--Sobic003G326900 Sobic001G404100 Sobic001G404100 Sobic004G248900--Sobic001G404100 Sobic001G281900 Sobic001G281900 Sobic005G105500--Sobic001G281900 Sobic001G458700 Sobic001G458700 Sobic005G105500--Sobic001G458700 Sobic002G341800 Sobic002G341800 Sobic005G105500--Sobic002G341800 Sobic001G145500 Sobic001G145500 Sobic005G105500--Sobic001G145500 Sobic001G096100 Sobic001G096100 Sobic005G105500--Sobic001G096100 Sobic006G211800 Sobic006G211800 Sobic005G105500--Sobic006G211800 Sobic007G176200 Sobic007G176200 Sobic005G105500--Sobic007G176200 Sobic003G330500 Sobic003G330500 Sobic005G105500--Sobic003G330500 Sobic006G002201 Sobic006G002201 Sobic005G105500--Sobic006G002201 Sobic005G191600--Sobic001G117400 Sobic005G191600--Sobic004G248900 Sobic009G212300 Sobic009G212300 Sobic005G191600--Sobic009G212300 Sobic001G342200 Sobic001G342200 Sobic005G191600--Sobic001G342200 Sobic004G066800 Sobic004G066800 Sobic005G191600--Sobic004G066800 Sobic005G191600--Sobic001G096100 Sobic002G255100 Sobic002G255100 Sobic005G191600--Sobic002G255100 Sobic009G168000 Sobic009G168000 Sobic005G191600--Sobic009G168000 Sobic007G092100 Sobic007G092100 Sobic005G191600--Sobic007G092100 Sobic001G129400--Sobic003G326900 Sobic003G003000 Sobic003G003000 Sobic001G129400--Sobic003G003000 Sobic010G194200 Sobic010G194200 Sobic001G129400--Sobic010G194200 Sobic001G008800 Sobic001G008800 Sobic001G129400--Sobic001G008800 Sobic001G129400--Sobic004G248900 Sobic010G018000 Sobic010G018000 Sobic001G129400--Sobic010G018000 Sobic001G451901 Sobic001G451901 Sobic001G129400--Sobic001G451901 Sobic001G129400--Sobic001G060300 Sobic001G473400 Sobic001G473400 Sobic001G129400--Sobic001G473400 Sobic002G045100 Sobic002G045100 Sobic007G143000--Sobic002G045100 Sobic001G214900 Sobic001G214900 Sobic007G143000--Sobic001G214900 Sobic003G160900 Sobic003G160900 Sobic007G143000--Sobic003G160900 Sobic007G143000--Sobic004G248900 Sobic006G243400 Sobic006G243400 Sobic007G143000--Sobic006G243400 Sobic007G143000--Sobic010G018000 Sobic007G034400 Sobic007G034400 Sobic007G143000--Sobic007G034400 Sobic007G143000--Sobic003G326900 Sobic005G164700 Sobic005G164700 Sobic007G143000--Sobic005G164700 Sobic001G060300--Sobic001G342200 Sobic001G178500 Sobic001G178500 Sobic001G060300--Sobic001G178500 Sobic001G060300--Sobic001G214900 Sobic004G262300 Sobic004G262300 Sobic001G060300--Sobic004G262300 Sobic009G112900 Sobic009G112900 Sobic001G060300--Sobic009G112900 Sobic002G402500 Sobic002G402500 Sobic001G060300--Sobic002G402500 Sobic008G136800 Sobic008G136800 Sobic001G060300--Sobic008G136800 Sobic001G060300--Sobic010G194200 Sobic009G012800 Sobic009G012800 Sobic001G060300--Sobic009G012800 Sobic001G025600 Sobic001G025600 Sobic010G013900--Sobic001G025600 Sobic002G371100 Sobic002G371100 Sobic010G013900--Sobic002G371100 Sobic005G027300 Sobic005G027300 Sobic010G013900--Sobic005G027300 Sobic001G481700 Sobic001G481700 Sobic010G013900--Sobic001G481700 Sobic010G013900--Sobic004G248900 Sobic004G002350 Sobic004G002350 Sobic010G013900--Sobic004G002350 Sobic003G196800 Sobic003G196800 Sobic010G013900--Sobic003G196800 Sobic010G013900--Sobic001G117400 Sobic003G028100 Sobic003G028100 Sobic010G013900--Sobic003G028100 Sobic001G117400--Sobic003G160900 Sobic003G424800 Sobic003G424800 Sobic001G117400--Sobic003G424800 Sobic001G117400--Sobic002G371100 Sobic001G117400--Sobic005G191600 Sobic001G117400--Sobic002G255100 Sobic001G117400--Sobic004G002350 Sobic001G018800 Sobic001G018800 Sobic001G117400--Sobic001G018800 Sobic001G117400--Sobic001G404100 Sobic001G117400--Sobic001G481700 Sobic003G326900--Sobic001G129400 Sobic003G326900--Sobic002G402500 Sobic003G326900--Sobic001G060300 Sobic003G326900--Sobic001G008800 Sobic004G184000 Sobic004G184000 Sobic003G326900--Sobic004G184000 Sobic003G326900--Sobic010G194200 Sobic003G326900--Sobic010G018000 Sobic003G326900--Sobic004G248900 Sobic003G326900--Sobic001G214900 Sobic001G404100--Sobic002G341800 Sobic001G404100--Sobic001G481700 Sobic001G502200 Sobic001G502200 Sobic001G404100--Sobic001G502200 Sobic008G137600 Sobic008G137600 Sobic001G404100--Sobic008G137600 Sobic009G104000 Sobic009G104000 Sobic001G404100--Sobic009G104000 Sobic001G404100--Sobic001G096100 Sobic002G428200 Sobic002G428200 Sobic001G404100--Sobic002G428200 Sobic001G404100--Sobic009G212300 Sobic006G252200 Sobic006G252200 Sobic001G404100--Sobic006G252200
Octagon: transcription factors


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