Gene annotation
Transcriptome id Sobic.001G129400.2
Synonym Sb01g011340
Functional annotation ribosomal protein-related, putative, expressed
UniProt A0A1Z5S5G7
Pfam PF01165
Panther DB PTHR37228 PTHR37228:SF1
NCBI CDD -
KEGG Orthology K02970; RP-S21, MRPS21, small subunit ribosomal protein S21
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT3G26360 : Ribosomal protein S21 family protein
RAP-DB (Rice) LOC_Os03g48830.1 : ribosomal protein-related, putative, expressed
MaizeGDB (Corn) Zm00025a007682 , Zm00025a017076 , Zm00025a044773
Brachypodium -
Barley HORVU5Hr1G010890.1 , HORVU5Hr1G010890.2
Wheat TraesCS4B02G034300 , TraesCS4A02G278700 , TraesCS4B02G033900 , TraesCS5D02G054600 , TraesCS4D02G032800 , TraesCS5B02G048700
Populus -


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cDNA sequences
Sobic.001G129400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G326900 expressed protein -
2 Sobic.003G003000 DNA-binding protein-related, putative, expressed K07466: RFA1, RPA1, replication factor A1
3 Sobic.010G194200 expressed protein -
4 Sobic.001G008800 expressed protein -
5 Sobic.004G248900 50S ribosomal protein L17, putative, expressed K02879: RP-L17, MRPL17, large subunit ribosomal protein L17
6 Sobic.010G018000 39S ribosomal protein L47, mitochondrial precursor, putative, expressed K17428: MRPL47, large subunit ribosomal protein L47
7 Sobic.001G451901 - -
8 Sobic.001G060300 expressed protein -
9 Sobic.001G473400 NADH dehydrogenase 1 alpha subcomplex subunit 13, putative, expressed K11353: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 13
10 Sobic.001G132900 expressed protein -
11 Sobic.004G150200 expressed protein -
12 Sobic.001G110300 fb27, putative, expressed -
13 Sobic.004G184000 SFT2, putative, expressed -
14 Sobic.006G020900 phosphoglycerate mutase, putative, expressed -
15 Sobic.007G143000 ribosomal protein S17, putative, expressed K02961: RP-S17, MRPS17, small subunit ribosomal protein S17
16 Sobic.004G106700 WD domain, G-beta repeat domain containing protein, expressed K13341: PEX7, peroxin-7
17 Sobic.002G402500 ribosomal protein, putative, expressed K02996: RP-S9, MRPS9, small subunit ribosomal protein S9
18 Sobic.005G127100 expressed protein -
19 Sobic.001G198200 CRP3 - Cysteine-rich family protein precursor, expressed -
20 Sobic.009G168000 selT-like protein precursor, putative, expressed -


Gene co-expression network
sample Sobic001G129400 Sobic001G129400 Sobic003G326900 Sobic003G326900 Sobic001G129400--Sobic003G326900 Sobic003G003000 Sobic003G003000 Sobic001G129400--Sobic003G003000 Sobic010G194200 Sobic010G194200 Sobic001G129400--Sobic010G194200 Sobic001G008800 Sobic001G008800 Sobic001G129400--Sobic001G008800 Sobic004G248900 Sobic004G248900 Sobic001G129400--Sobic004G248900 Sobic010G018000 Sobic010G018000 Sobic001G129400--Sobic010G018000 Sobic001G451901 Sobic001G451901 Sobic001G129400--Sobic001G451901 Sobic001G060300 Sobic001G060300 Sobic001G129400--Sobic001G060300 Sobic001G473400 Sobic001G473400 Sobic001G129400--Sobic001G473400 Sobic003G326900--Sobic001G129400 Sobic002G402500 Sobic002G402500 Sobic003G326900--Sobic002G402500 Sobic003G326900--Sobic001G060300 Sobic003G326900--Sobic001G008800 Sobic004G184000 Sobic004G184000 Sobic003G326900--Sobic004G184000 Sobic003G326900--Sobic010G194200 Sobic003G326900--Sobic010G018000 Sobic003G326900--Sobic004G248900 Sobic001G214900 Sobic001G214900 Sobic003G326900--Sobic001G214900 Sobic003G003000--Sobic001G129400 Sobic001G132900 Sobic001G132900 Sobic003G003000--Sobic001G132900 Sobic006G281200 Sobic006G281200 Sobic003G003000--Sobic006G281200 Sobic003G003000--Sobic010G018000 Sobic003G003000--Sobic001G008800 Sobic004G018400 Sobic004G018400 Sobic003G003000--Sobic004G018400 Sobic002G117200 Sobic002G117200 Sobic003G003000--Sobic002G117200 Sobic010G094800 Sobic010G094800 Sobic003G003000--Sobic010G094800 Sobic005G127100 Sobic005G127100 Sobic003G003000--Sobic005G127100 Sobic010G194200--Sobic001G129400 Sobic010G194200--Sobic001G060300 Sobic010G194200--Sobic003G326900 Sobic010G194200--Sobic001G451901 Sobic010G194200--Sobic001G473400 Sobic005G132700 Sobic005G132700 Sobic010G194200--Sobic005G132700 Sobic004G106700 Sobic004G106700 Sobic010G194200--Sobic004G106700 Sobic006G153200 Sobic006G153200 Sobic010G194200--Sobic006G153200 Sobic001G110300 Sobic001G110300 Sobic010G194200--Sobic001G110300 Sobic001G008800--Sobic001G129400 Sobic001G008800--Sobic003G326900 Sobic001G008800--Sobic001G132900 Sobic001G008800--Sobic003G003000 Sobic004G136500 Sobic004G136500 Sobic001G008800--Sobic004G136500 Sobic004G117800 Sobic004G117800 Sobic001G008800--Sobic004G117800 Sobic001G144600 Sobic001G144600 Sobic001G008800--Sobic001G144600 Sobic006G087400 Sobic006G087400 Sobic001G008800--Sobic006G087400 Sobic001G008800--Sobic001G451901 Sobic005G105500 Sobic005G105500 Sobic004G248900--Sobic005G105500 Sobic005G191600 Sobic005G191600 Sobic004G248900--Sobic005G191600 Sobic004G248900--Sobic001G129400 Sobic007G143000 Sobic007G143000 Sobic004G248900--Sobic007G143000 Sobic004G248900--Sobic001G060300 Sobic010G013900 Sobic010G013900 Sobic004G248900--Sobic010G013900 Sobic001G117400 Sobic001G117400 Sobic004G248900--Sobic001G117400 Sobic004G248900--Sobic003G326900 Sobic001G404100 Sobic001G404100 Sobic004G248900--Sobic001G404100 Sobic010G018000--Sobic003G326900 Sobic010G018000--Sobic001G129400 Sobic010G018000--Sobic003G003000 Sobic007G034400 Sobic007G034400 Sobic010G018000--Sobic007G034400 Sobic010G018000--Sobic007G143000 Sobic002G045100 Sobic002G045100 Sobic010G018000--Sobic002G045100 Sobic003G367900 Sobic003G367900 Sobic010G018000--Sobic003G367900 Sobic007G108100 Sobic007G108100 Sobic010G018000--Sobic007G108100 Sobic001G431700 Sobic001G431700 Sobic010G018000--Sobic001G431700 Sobic001G451901--Sobic001G110300 Sobic001G451901--Sobic001G060300 Sobic001G451901--Sobic004G184000 Sobic001G451901--Sobic001G129400 Sobic003G283300 Sobic003G283300 Sobic001G451901--Sobic003G283300 Sobic001G451901--Sobic010G194200 Sobic004G262300 Sobic004G262300 Sobic001G451901--Sobic004G262300 Sobic004G025300 Sobic004G025300 Sobic001G451901--Sobic004G025300 Sobic003G217100 Sobic003G217100 Sobic001G451901--Sobic003G217100 Sobic001G342200 Sobic001G342200 Sobic001G060300--Sobic001G342200 Sobic001G178500 Sobic001G178500 Sobic001G060300--Sobic001G178500 Sobic001G060300--Sobic001G214900 Sobic001G060300--Sobic004G262300 Sobic009G112900 Sobic009G112900 Sobic001G060300--Sobic009G112900 Sobic001G060300--Sobic002G402500 Sobic008G136800 Sobic008G136800 Sobic001G060300--Sobic008G136800 Sobic001G060300--Sobic010G194200 Sobic009G012800 Sobic009G012800 Sobic001G060300--Sobic009G012800 Sobic010G258000 Sobic010G258000 Sobic001G473400--Sobic010G258000 Sobic003G170300 Sobic003G170300 Sobic001G473400--Sobic003G170300 Sobic009G016500 Sobic009G016500 Sobic001G473400--Sobic009G016500 Sobic009G240700 Sobic009G240700 Sobic001G473400--Sobic009G240700 Sobic003G388700 Sobic003G388700 Sobic001G473400--Sobic003G388700 Sobic006G020900 Sobic006G020900 Sobic001G473400--Sobic006G020900 Sobic001G282500 Sobic001G282500 Sobic001G473400--Sobic001G282500 Sobic002G395000 Sobic002G395000 Sobic001G473400--Sobic002G395000 Sobic002G308300 Sobic002G308300 Sobic001G473400--Sobic002G308300
Octagon: transcription factors


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