Gene annotation
Transcriptome id Sobic.001G008800.1
Synonym Sb01g000880
Functional annotation expressed protein
UniProt C5WS14
Pfam -
Panther DB PTHR35110 PTHR35110:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G73940 : -
RAP-DB (Rice) LOC_Os03g63550.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.001G008800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G129400 ribosomal protein-related, putative, expressed K02970: RP-S21, MRPS21, small subunit ribosomal protein S21
2 Sobic.003G326900 expressed protein -
3 Sobic.001G132900 expressed protein -
4 Sobic.003G003000 DNA-binding protein-related, putative, expressed K07466: RFA1, RPA1, replication factor A1
5 Sobic.004G136500 - -
6 Sobic.004G117800 Ser/Thr protein phosphatase family protein, putative, expressed K18467: vacuolar protein sorting-associated protein 29
7 Sobic.001G144600 parafibromin, putative, expressed K15175: parafibromin
8 Sobic.006G087400 expressed protein -
9 Sobic.001G451901 - -
10 Sobic.004G248900 50S ribosomal protein L17, putative, expressed K02879: RP-L17, MRPL17, large subunit ribosomal protein L17
11 Sobic.010G018000 39S ribosomal protein L47, mitochondrial precursor, putative, expressed K17428: MRPL47, large subunit ribosomal protein L47
12 Sobic.010G194200 expressed protein -
13 Sobic.004G184000 SFT2, putative, expressed -
14 Sobic.008G051100 RNA polymerase II subunit A C-terminal domain phosphatase ssu72, putative, expressed K15544: RNA polymerase II subunit A C-terminal domain phosphatase SSU72
15 Sobic.009G209100 plasminogen activator inhibitor 1 RNA-binding protein, putative, expressed K13199: plasminogen activator inhibitor 1 RNA-binding protein
16 Sobic.003G119400 PUR ALPHA-1, putative, expressed -
17 Sobic.006G281500 prenylcysteine oxidase 1 precursor, putative, expressed K05906: PCYOX1, prenylcysteine oxidase / farnesylcysteine lyase
18 Sobic.007G143000 ribosomal protein S17, putative, expressed K02961: RP-S17, MRPS17, small subunit ribosomal protein S17
19 Sobic.002G402500 ribosomal protein, putative, expressed K02996: RP-S9, MRPS9, small subunit ribosomal protein S9
20 Sobic.001G041200 peptidyl-prolyl cis-trans isomerase, putative, expressed K09567: PPIH, peptidyl-prolyl isomerase H (cyclophilin H)


Gene co-expression network
sample Sobic001G008800 Sobic001G008800 Sobic001G129400 Sobic001G129400 Sobic001G008800--Sobic001G129400 Sobic003G326900 Sobic003G326900 Sobic001G008800--Sobic003G326900 Sobic001G132900 Sobic001G132900 Sobic001G008800--Sobic001G132900 Sobic003G003000 Sobic003G003000 Sobic001G008800--Sobic003G003000 Sobic004G136500 Sobic004G136500 Sobic001G008800--Sobic004G136500 Sobic004G117800 Sobic004G117800 Sobic001G008800--Sobic004G117800 Sobic001G144600 Sobic001G144600 Sobic001G008800--Sobic001G144600 Sobic006G087400 Sobic006G087400 Sobic001G008800--Sobic006G087400 Sobic001G451901 Sobic001G451901 Sobic001G008800--Sobic001G451901 Sobic001G129400--Sobic003G326900 Sobic001G129400--Sobic003G003000 Sobic010G194200 Sobic010G194200 Sobic001G129400--Sobic010G194200 Sobic001G129400--Sobic001G008800 Sobic004G248900 Sobic004G248900 Sobic001G129400--Sobic004G248900 Sobic010G018000 Sobic010G018000 Sobic001G129400--Sobic010G018000 Sobic001G129400--Sobic001G451901 Sobic001G060300 Sobic001G060300 Sobic001G129400--Sobic001G060300 Sobic001G473400 Sobic001G473400 Sobic001G129400--Sobic001G473400 Sobic003G326900--Sobic001G129400 Sobic002G402500 Sobic002G402500 Sobic003G326900--Sobic002G402500 Sobic003G326900--Sobic001G060300 Sobic003G326900--Sobic001G008800 Sobic004G184000 Sobic004G184000 Sobic003G326900--Sobic004G184000 Sobic003G326900--Sobic010G194200 Sobic003G326900--Sobic010G018000 Sobic003G326900--Sobic004G248900 Sobic001G214900 Sobic001G214900 Sobic003G326900--Sobic001G214900 Sobic001G132900--Sobic003G003000 Sobic001G132900--Sobic001G008800 Sobic009G209100 Sobic009G209100 Sobic001G132900--Sobic009G209100 Sobic001G132900--Sobic001G129400 Sobic001G404100 Sobic001G404100 Sobic001G132900--Sobic001G404100 Sobic001G132900--Sobic010G018000 Sobic001G136500 Sobic001G136500 Sobic001G132900--Sobic001G136500 Sobic009G130400 Sobic009G130400 Sobic001G132900--Sobic009G130400 Sobic001G132900--Sobic004G117800 Sobic003G003000--Sobic001G129400 Sobic003G003000--Sobic001G132900 Sobic006G281200 Sobic006G281200 Sobic003G003000--Sobic006G281200 Sobic003G003000--Sobic010G018000 Sobic003G003000--Sobic001G008800 Sobic004G018400 Sobic004G018400 Sobic003G003000--Sobic004G018400 Sobic002G117200 Sobic002G117200 Sobic003G003000--Sobic002G117200 Sobic010G094800 Sobic010G094800 Sobic003G003000--Sobic010G094800 Sobic005G127100 Sobic005G127100 Sobic003G003000--Sobic005G127100 Sobic004G136500--Sobic001G008800 Sobic004G074300 Sobic004G074300 Sobic004G136500--Sobic004G074300 Sobic004G136500--Sobic004G117800 Sobic001G119900 Sobic001G119900 Sobic004G136500--Sobic001G119900 Sobic002G209400 Sobic002G209400 Sobic004G136500--Sobic002G209400 Sobic006G272200 Sobic006G272200 Sobic004G136500--Sobic006G272200 Sobic010G085200 Sobic010G085200 Sobic004G136500--Sobic010G085200 Sobic004G136500--Sobic001G132900 Sobic001G280400 Sobic001G280400 Sobic004G136500--Sobic001G280400 Sobic006G170200 Sobic006G170200 Sobic004G117800--Sobic006G170200 Sobic008G051100 Sobic008G051100 Sobic004G117800--Sobic008G051100 Sobic009G029700 Sobic009G029700 Sobic004G117800--Sobic009G029700 Sobic004G117800--Sobic001G280400 Sobic004G117800--Sobic004G136500 Sobic004G117800--Sobic001G008800 Sobic004G117800--Sobic001G132900 Sobic002G058700 Sobic002G058700 Sobic004G117800--Sobic002G058700 Sobic003G058900 Sobic003G058900 Sobic004G117800--Sobic003G058900 Sobic003G368800 Sobic003G368800 Sobic001G144600--Sobic003G368800 Sobic001G144600--Sobic006G087400 Sobic001G144600--Sobic001G008800 Sobic001G036300 Sobic001G036300 Sobic001G144600--Sobic001G036300 Sobic001G144600--Sobic003G058900 Sobic001G144600--Sobic010G085200 Sobic009G056300 Sobic009G056300 Sobic001G144600--Sobic009G056300 Sobic001G276200 Sobic001G276200 Sobic001G144600--Sobic001G276200 Sobic002G131300 Sobic002G131300 Sobic001G144600--Sobic002G131300 Sobic005G155800 Sobic005G155800 Sobic006G087400--Sobic005G155800 Sobic006G087400--Sobic001G144600 Sobic002G259400 Sobic002G259400 Sobic006G087400--Sobic002G259400 Sobic009G174000 Sobic009G174000 Sobic006G087400--Sobic009G174000 Sobic006G087400--Sobic001G008800 Sobic002G294100 Sobic002G294100 Sobic006G087400--Sobic002G294100 Sobic006G087400--Sobic002G058700 Sobic009G120500 Sobic009G120500 Sobic006G087400--Sobic009G120500 Sobic010G230600 Sobic010G230600 Sobic006G087400--Sobic010G230600 Sobic001G110300 Sobic001G110300 Sobic001G451901--Sobic001G110300 Sobic001G451901--Sobic001G060300 Sobic001G451901--Sobic004G184000 Sobic001G451901--Sobic001G129400 Sobic003G283300 Sobic003G283300 Sobic001G451901--Sobic003G283300 Sobic001G451901--Sobic010G194200 Sobic004G262300 Sobic004G262300 Sobic001G451901--Sobic004G262300 Sobic004G025300 Sobic004G025300 Sobic001G451901--Sobic004G025300 Sobic003G217100 Sobic003G217100 Sobic001G451901--Sobic003G217100
Octagon: transcription factors


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