Gene annotation
Transcriptome id Sobic.004G184000.1
Synonym Sb04g023300
Functional annotation SFT2, putative, expressed
UniProt C5XV04
Pfam PF04178
Panther DB PTHR23137 PTHR23137:SF8
NCBI CDD KOG2887; Membrane protein involved in ER to Golgi transport
KEGG Orthology -
Gene Ontology GO:0016192; vesicle-mediated transport GO:0016021integral component of membrane GO:0006810transport


Orthologs (automatic annotation)
TAIR AT5G23550 : Got1/Sft2-like vescicle transport protein family
RAP-DB (Rice) LOC_Os02g35640.1 : SFT2, putative, expressed
MaizeGDB (Corn) Zm00025a031653
Brachypodium KQJ99947
Barley HORVU6Hr1G048290.9 , HORVU6Hr1G048290.8 , HORVU6Hr1G048290.1 , HORVU6Hr1G048290.3 , HORVU6Hr1G048290.2 , HORVU6Hr1G048290.5 , HORVU6Hr1G048290.4 , HORVU6Hr1G048290.7 , HORVU6Hr1G048290.6 , HORVU6Hr1G048290.11 , HORVU6Hr1G048290.10
Wheat TraesCS6D02G182100 , TraesCS6A02G193700
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.004G184000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G165300 SNARE domain containing protein, putative, expressed K08504: blocked early in transport 1
2 Sobic.005G129201 - -
3 Sobic.003G326900 expressed protein -
4 Sobic.010G258000 peptidyl-prolyl cis-trans isomerase, putative, expressed K01802: peptidylprolyl isomerase
5 Sobic.001G451901 - -
6 Sobic.003G348200 Lung seven transmembrane receptor domain containing protein, putative, expressed -
7 Sobic.007G217400 COP9 signalosome complex subunit 6a, putative, expressed K12179: COPS6, COP9 signalosome complex subunit 6
8 Sobic.001G110300 fb27, putative, expressed -
9 Sobic.001G116000 dynamin family protein, putative, expressed K01528: dynamin 1/3
10 Sobic.001G176900 mTERF family protein, expressed K15032: mTERF domain-containing protein, mitochondrial
11 Sobic.001G473400 NADH dehydrogenase 1 alpha subcomplex subunit 13, putative, expressed K11353: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 13
12 Sobic.008G125000 AP-3 complex subunit delta, putative, expressed K12396: AP-3 complex subunit delta
13 Sobic.005G105500 expressed protein -
14 Sobic.006G020900 phosphoglycerate mutase, putative, expressed -
15 Sobic.002G367800 PPR repeat domain containing protein, putative, expressed -
16 Sobic.010G277000 exosome complex exonuclease, putative, expressed K12589: RRP42, exosome complex component RRP42
17 Sobic.001G129400 ribosomal protein-related, putative, expressed K02970: RP-S21, MRPS21, small subunit ribosomal protein S21
18 Sobic.001G196100 src homology-3 domain protein 3, putative, expressed -
19 Sobic.006G237200 vacuolar ATP synthase subunit D 1, putative, expressed K02149: ATPeV1D, V-type H+-transporting ATPase subunit D
20 Sobic.008G103800 expressed protein -


Gene co-expression network
sample Sobic004G184000 Sobic004G184000 Sobic007G165300 Sobic007G165300 Sobic004G184000--Sobic007G165300 Sobic005G129201 Sobic005G129201 Sobic004G184000--Sobic005G129201 Sobic003G326900 Sobic003G326900 Sobic004G184000--Sobic003G326900 Sobic010G258000 Sobic010G258000 Sobic004G184000--Sobic010G258000 Sobic001G451901 Sobic001G451901 Sobic004G184000--Sobic001G451901 Sobic003G348200 Sobic003G348200 Sobic004G184000--Sobic003G348200 Sobic007G217400 Sobic007G217400 Sobic004G184000--Sobic007G217400 Sobic001G110300 Sobic001G110300 Sobic004G184000--Sobic001G110300 Sobic001G116000 Sobic001G116000 Sobic004G184000--Sobic001G116000 Sobic007G165300--Sobic004G184000 Sobic007G165300--Sobic007G217400 Sobic009G207200 Sobic009G207200 Sobic007G165300--Sobic009G207200 Sobic003G170300 Sobic003G170300 Sobic007G165300--Sobic003G170300 Sobic003G028100 Sobic003G028100 Sobic007G165300--Sobic003G028100 Sobic001G506000 Sobic001G506000 Sobic007G165300--Sobic001G506000 Sobic005G178300 Sobic005G178300 Sobic007G165300--Sobic005G178300 Sobic009G201800 Sobic009G201800 Sobic007G165300--Sobic009G201800 Sobic007G165300--Sobic010G258000 Sobic005G129201--Sobic004G184000 Sobic007G173000 Sobic007G173000 Sobic005G129201--Sobic007G173000 Sobic002G367800 Sobic002G367800 Sobic005G129201--Sobic002G367800 Sobic003G004100 Sobic003G004100 Sobic005G129201--Sobic003G004100 Sobic001G533100 Sobic001G533100 Sobic005G129201--Sobic001G533100 Sobic005G129201--Sobic001G116000 Sobic001G088200 Sobic001G088200 Sobic005G129201--Sobic001G088200 Sobic004G007700 Sobic004G007700 Sobic005G129201--Sobic004G007700 Sobic004G034300 Sobic004G034300 Sobic005G129201--Sobic004G034300 Sobic001G129400 Sobic001G129400 Sobic003G326900--Sobic001G129400 Sobic002G402500 Sobic002G402500 Sobic003G326900--Sobic002G402500 Sobic001G060300 Sobic001G060300 Sobic003G326900--Sobic001G060300 Sobic001G008800 Sobic001G008800 Sobic003G326900--Sobic001G008800 Sobic003G326900--Sobic004G184000 Sobic010G194200 Sobic010G194200 Sobic003G326900--Sobic010G194200 Sobic010G018000 Sobic010G018000 Sobic003G326900--Sobic010G018000 Sobic004G248900 Sobic004G248900 Sobic003G326900--Sobic004G248900 Sobic001G214900 Sobic001G214900 Sobic003G326900--Sobic001G214900 Sobic001G473400 Sobic001G473400 Sobic010G258000--Sobic001G473400 Sobic006G203900 Sobic006G203900 Sobic010G258000--Sobic006G203900 Sobic001G035400 Sobic001G035400 Sobic010G258000--Sobic001G035400 Sobic001G073600 Sobic001G073600 Sobic010G258000--Sobic001G073600 Sobic003G388700 Sobic003G388700 Sobic010G258000--Sobic003G388700 Sobic009G016500 Sobic009G016500 Sobic010G258000--Sobic009G016500 Sobic010G258000--Sobic003G170300 Sobic008G136800 Sobic008G136800 Sobic010G258000--Sobic008G136800 Sobic007G119600 Sobic007G119600 Sobic010G258000--Sobic007G119600 Sobic001G451901--Sobic001G110300 Sobic001G451901--Sobic001G060300 Sobic001G451901--Sobic004G184000 Sobic001G451901--Sobic001G129400 Sobic003G283300 Sobic003G283300 Sobic001G451901--Sobic003G283300 Sobic001G451901--Sobic010G194200 Sobic004G262300 Sobic004G262300 Sobic001G451901--Sobic004G262300 Sobic004G025300 Sobic004G025300 Sobic001G451901--Sobic004G025300 Sobic003G217100 Sobic003G217100 Sobic001G451901--Sobic003G217100 Sobic004G331900 Sobic004G331900 Sobic003G348200--Sobic004G331900 Sobic003G348200--Sobic004G184000 Sobic001G196100 Sobic001G196100 Sobic003G348200--Sobic001G196100 Sobic010G277000 Sobic010G277000 Sobic003G348200--Sobic010G277000 Sobic001G542900 Sobic001G542900 Sobic003G348200--Sobic001G542900 Sobic003G348200--Sobic001G116000 Sobic009G187600 Sobic009G187600 Sobic003G348200--Sobic009G187600 Sobic003G424300 Sobic003G424300 Sobic003G348200--Sobic003G424300 Sobic004G358900 Sobic004G358900 Sobic003G348200--Sobic004G358900 Sobic007G217400--Sobic001G542900 Sobic009G212300 Sobic009G212300 Sobic007G217400--Sobic009G212300 Sobic006G079900 Sobic006G079900 Sobic007G217400--Sobic006G079900 Sobic007G217400--Sobic007G165300 Sobic008G137600 Sobic008G137600 Sobic007G217400--Sobic008G137600 Sobic009G234400 Sobic009G234400 Sobic007G217400--Sobic009G234400 Sobic007G217400--Sobic009G207200 Sobic002G423800 Sobic002G423800 Sobic007G217400--Sobic002G423800 Sobic006G211800 Sobic006G211800 Sobic007G217400--Sobic006G211800 Sobic004G106700 Sobic004G106700 Sobic001G110300--Sobic004G106700 Sobic001G110300--Sobic001G451901 Sobic003G305100 Sobic003G305100 Sobic001G110300--Sobic003G305100 Sobic001G110300--Sobic004G184000 Sobic005G110526 Sobic005G110526 Sobic001G110300--Sobic005G110526 Sobic001G110300--Sobic001G129400 Sobic006G231500 Sobic006G231500 Sobic001G110300--Sobic006G231500 Sobic006G237200 Sobic006G237200 Sobic001G110300--Sobic006G237200 Sobic002G260200 Sobic002G260200 Sobic001G110300--Sobic002G260200 Sobic001G116000--Sobic001G196100 Sobic001G116000--Sobic001G035400 Sobic007G044400 Sobic007G044400 Sobic001G116000--Sobic007G044400 Sobic007G048700 Sobic007G048700 Sobic001G116000--Sobic007G048700 Sobic002G313600 Sobic002G313600 Sobic001G116000--Sobic002G313600 Sobic008G084100 Sobic008G084100 Sobic001G116000--Sobic008G084100 Sobic001G026600 Sobic001G026600 Sobic001G116000--Sobic001G026600 Sobic004G031800 Sobic004G031800 Sobic001G116000--Sobic004G031800 Sobic001G116000--Sobic004G184000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.