Gene annotation
Transcriptome id Sobic.006G020900.1
Synonym Sb06g001950
Functional annotation phosphoglycerate mutase, putative, expressed
UniProt C5YCL6
Pfam PF00300
Panther DB PTHR23029 PTHR23029:SF36
NCBI CDD KOG0235; Phosphoglycerate mutase
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G38370 : Phosphoglycerate mutase family protein
RAP-DB (Rice) LOC_Os04g14760.1 : phosphoglycerate mutase, putative, expressed
MaizeGDB (Corn) Zm00025a012402
Brachypodium KQJ81900 , KQJ81901 , KQJ81902 , PNT60723
Barley HORVU5Hr1G033420.6 , HORVU5Hr1G033420.5 , HORVU5Hr1G033420.4 , HORVU5Hr1G033420.3 , HORVU5Hr1G033420.2 , HORVU5Hr1G033420.1
Wheat TraesCS2D02G070000 , TraesCS2B02G085100 , TraesCS2A02G071100
Populus -


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cDNA sequences
Sobic.006G020900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G473400 NADH dehydrogenase 1 alpha subcomplex subunit 13, putative, expressed K11353: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 13
2 Sobic.002G410700 vacuolar ATP synthase subunit F, putative, expressed K02151: ATPeV1F, V-type H+-transporting ATPase subunit F
3 Sobic.003G388700 ribosomal protein L13, putative, expressed K02871: RP-L13, MRPL13, large subunit ribosomal protein L13
4 Sobic.005G105500 expressed protein -
5 Sobic.004G291400 rho guanine nucleotide exchange factor, putative, expressed -
6 Sobic.001G304000 enoyl-CoA hydratase/isomerase family protein, putative, expressed K05605: 3-hydroxyisobutyryl-CoA hydrolase
7 Sobic.009G256000 vacuolar ATP synthase subunit C, putative, expressed K02148: ATPeV1C, V-type H+-transporting ATPase subunit C
8 Sobic.003G392600 expressed protein -
9 Sobic.009G240700 -(PubMedID : 26976818)@lactate/malate dehydrogenase, putative, expressed K00026: malate dehydrogenase
10 Sobic.003G202100 Uncharacterized ACR, COG1565 containing protein, putative, expressed K18164: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 7
11 Sobic.003G216500 vacuolar ATP synthase, putative, expressed K03661: ATPeV0B, V-type H+-transporting ATPase 21kDa proteolipid subunit
12 Sobic.003G170300 LYR motif containing protein, putative, expressed K03950: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 6
13 Sobic.002G186300 serine/threonine-protein kinase 16, putative, expressed K08856: serine/threonine kinase 16
14 Sobic.003G326900 expressed protein -
15 Sobic.004G248900 50S ribosomal protein L17, putative, expressed K02879: RP-L17, MRPL17, large subunit ribosomal protein L17
16 Sobic.003G200800 vacuolar ATP synthase subunit d, putative, expressed K02146: ATPeV0D, V-type H+-transporting ATPase subunit d
17 Sobic.005G018800 expressed protein -
18 Sobic.005G111900 uncharacterized protein family UPF0016 domain containing protein, expressed -
19 Sobic.004G184000 SFT2, putative, expressed -
20 Sobic.007G061400 heat shock protein DnaJ, putative, expressed K09539: DnaJ homolog subfamily C member 19


Gene co-expression network
sample Sobic006G020900 Sobic006G020900 Sobic001G473400 Sobic001G473400 Sobic006G020900--Sobic001G473400 Sobic002G410700 Sobic002G410700 Sobic006G020900--Sobic002G410700 Sobic003G388700 Sobic003G388700 Sobic006G020900--Sobic003G388700 Sobic005G105500 Sobic005G105500 Sobic006G020900--Sobic005G105500 Sobic004G291400 Sobic004G291400 Sobic006G020900--Sobic004G291400 Sobic001G304000 Sobic001G304000 Sobic006G020900--Sobic001G304000 Sobic009G256000 Sobic009G256000 Sobic006G020900--Sobic009G256000 Sobic003G392600 Sobic003G392600 Sobic006G020900--Sobic003G392600 Sobic009G240700 Sobic009G240700 Sobic006G020900--Sobic009G240700 Sobic010G258000 Sobic010G258000 Sobic001G473400--Sobic010G258000 Sobic003G170300 Sobic003G170300 Sobic001G473400--Sobic003G170300 Sobic009G016500 Sobic009G016500 Sobic001G473400--Sobic009G016500 Sobic001G473400--Sobic009G240700 Sobic001G473400--Sobic003G388700 Sobic001G473400--Sobic006G020900 Sobic001G282500 Sobic001G282500 Sobic001G473400--Sobic001G282500 Sobic002G395000 Sobic002G395000 Sobic001G473400--Sobic002G395000 Sobic002G308300 Sobic002G308300 Sobic001G473400--Sobic002G308300 Sobic003G216500 Sobic003G216500 Sobic002G410700--Sobic003G216500 Sobic006G237200 Sobic006G237200 Sobic002G410700--Sobic006G237200 Sobic002G410700--Sobic009G256000 Sobic008G150300 Sobic008G150300 Sobic002G410700--Sobic008G150300 Sobic002G410700--Sobic001G473400 Sobic002G410700--Sobic006G020900 Sobic002G410700--Sobic009G240700 Sobic007G161200 Sobic007G161200 Sobic002G410700--Sobic007G161200 Sobic002G410700--Sobic003G170300 Sobic007G119600 Sobic007G119600 Sobic003G388700--Sobic007G119600 Sobic001G073600 Sobic001G073600 Sobic003G388700--Sobic001G073600 Sobic003G135600 Sobic003G135600 Sobic003G388700--Sobic003G135600 Sobic009G191400 Sobic009G191400 Sobic003G388700--Sobic009G191400 Sobic002G079700 Sobic002G079700 Sobic003G388700--Sobic002G079700 Sobic003G388700--Sobic001G473400 Sobic010G002800 Sobic010G002800 Sobic003G388700--Sobic010G002800 Sobic003G388700--Sobic010G258000 Sobic006G041800 Sobic006G041800 Sobic003G388700--Sobic006G041800 Sobic001G281900 Sobic001G281900 Sobic005G105500--Sobic001G281900 Sobic001G458700 Sobic001G458700 Sobic005G105500--Sobic001G458700 Sobic002G341800 Sobic002G341800 Sobic005G105500--Sobic002G341800 Sobic001G145500 Sobic001G145500 Sobic005G105500--Sobic001G145500 Sobic001G096100 Sobic001G096100 Sobic005G105500--Sobic001G096100 Sobic006G211800 Sobic006G211800 Sobic005G105500--Sobic006G211800 Sobic007G176200 Sobic007G176200 Sobic005G105500--Sobic007G176200 Sobic003G330500 Sobic003G330500 Sobic005G105500--Sobic003G330500 Sobic006G002201 Sobic006G002201 Sobic005G105500--Sobic006G002201 Sobic004G291400--Sobic005G105500 Sobic006G216000 Sobic006G216000 Sobic004G291400--Sobic006G216000 Sobic004G291400--Sobic006G002201 Sobic004G291400--Sobic006G020900 Sobic003G196800 Sobic003G196800 Sobic004G291400--Sobic003G196800 Sobic004G124100 Sobic004G124100 Sobic004G291400--Sobic004G124100 Sobic004G291400--Sobic002G341800 Sobic005G111900 Sobic005G111900 Sobic004G291400--Sobic005G111900 Sobic009G234400 Sobic009G234400 Sobic004G291400--Sobic009G234400 Sobic003G202100 Sobic003G202100 Sobic001G304000--Sobic003G202100 Sobic008G171400 Sobic008G171400 Sobic001G304000--Sobic008G171400 Sobic005G018800 Sobic005G018800 Sobic001G304000--Sobic005G018800 Sobic002G071100 Sobic002G071100 Sobic001G304000--Sobic002G071100 Sobic003G388900 Sobic003G388900 Sobic001G304000--Sobic003G388900 Sobic001G304000--Sobic006G020900 Sobic001G178500 Sobic001G178500 Sobic001G304000--Sobic001G178500 Sobic007G206300 Sobic007G206300 Sobic001G304000--Sobic007G206300 Sobic008G168200 Sobic008G168200 Sobic001G304000--Sobic008G168200 Sobic005G004100 Sobic005G004100 Sobic009G256000--Sobic005G004100 Sobic004G060100 Sobic004G060100 Sobic009G256000--Sobic004G060100 Sobic008G021200 Sobic008G021200 Sobic009G256000--Sobic008G021200 Sobic009G256000--Sobic007G161200 Sobic009G256000--Sobic005G018800 Sobic004G283600 Sobic004G283600 Sobic009G256000--Sobic004G283600 Sobic003G200800 Sobic003G200800 Sobic009G256000--Sobic003G200800 Sobic009G256000--Sobic002G410700 Sobic009G256000--Sobic006G237200 Sobic003G392600--Sobic003G202100 Sobic003G392600--Sobic006G020900 Sobic003G392600--Sobic001G304000 Sobic003G392600--Sobic003G388700 Sobic003G392600--Sobic002G071100 Sobic003G392600--Sobic005G018800 Sobic003G326900 Sobic003G326900 Sobic003G392600--Sobic003G326900 Sobic009G260700 Sobic009G260700 Sobic003G392600--Sobic009G260700 Sobic001G537100 Sobic001G537100 Sobic003G392600--Sobic001G537100 Sobic009G240700--Sobic003G170300 Sobic004G155100 Sobic004G155100 Sobic009G240700--Sobic004G155100 Sobic003G238500 Sobic003G238500 Sobic009G240700--Sobic003G238500 Sobic009G240700--Sobic001G473400 Sobic009G240700--Sobic002G395000 Sobic002G078300 Sobic002G078300 Sobic009G240700--Sobic002G078300 Sobic001G286200 Sobic001G286200 Sobic009G240700--Sobic001G286200 Sobic010G264300 Sobic010G264300 Sobic009G240700--Sobic010G264300 Sobic009G240700--Sobic001G282500
Octagon: transcription factors


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