Gene annotation
Transcriptome id Sobic.009G256000.1
Synonym DET3, Sb09g030620, ATVHA-C
Functional annotation vacuolar ATP synthase subunit C, putative, expressed
UniProt C5YX05
Pfam PF03223
Panther DB PTHR10137
NCBI CDD KOG2909; Vacuolar H+-ATPase V1 sector, subunit C
KEGG Orthology K02148; ATPeV1C, V-type H+-transporting ATPase subunit C
Gene Ontology GO:0015078; proton transmembrane transporter activity


Orthologs (automatic annotation)
TAIR AT1G12840 : vacuolar ATP synthase subunit C (VATC) / V-ATPase C subunit / vacuolar proton pump C subunit (DET3)
RAP-DB (Rice) LOC_Os05g51530.2 : vacuolar ATP synthase subunit C, putative, expressed
MaizeGDB (Corn) Zm00025a044739 , Zm00025a028999 , Zm00025a036778
Brachypodium KQK04582
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.009G256000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G004100 outer membrane protein, OMP85 family, putative, expressed K07277: SAM50, TOB55, outer membrane protein insertion porin family
2 Sobic.004G060100 ATP synthase, putative, expressed K02145: ATPeV1A, V-type H+-transporting ATPase subunit A
3 Sobic.008G021200 vacuolar ATP synthase subunit C, putative, expressed K02148: ATPeV1C, V-type H+-transporting ATPase subunit C
4 Sobic.007G161200 expressed protein -
5 Sobic.005G018800 expressed protein -
6 Sobic.004G283600 O-acyltransferase, putative, expressed K13519: LPT1, lysophospholipid acyltransferase
7 Sobic.003G200800 vacuolar ATP synthase subunit d, putative, expressed K02146: ATPeV0D, V-type H+-transporting ATPase subunit d
8 Sobic.002G410700 vacuolar ATP synthase subunit F, putative, expressed K02151: ATPeV1F, V-type H+-transporting ATPase subunit F
9 Sobic.006G237200 vacuolar ATP synthase subunit D 1, putative, expressed K02149: ATPeV1D, V-type H+-transporting ATPase subunit D
10 Sobic.006G020900 phosphoglycerate mutase, putative, expressed -
11 Sobic.002G186300 serine/threonine-protein kinase 16, putative, expressed K08856: serine/threonine kinase 16
12 Sobic.008G150300 Lg106, putative, expressed -
13 Sobic.001G338400 glycosyl transferase 8 domain containing protein, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
14 Sobic.001G115700 2Fe-2S iron-sulfur cluster binding domain containing protein, expressed K03934: NADH dehydrogenase (ubiquinone) Fe-S protein 1
15 Sobic.002G321400 glutamate receptor, putative, expressed K05387: glutamate receptor, ionotropic, plant
16 Sobic.001G458800 mitochondrial-processing peptidase subunit, mitochondrial precursor, putative, expressed K17732: PMPCB, mitochondrial-processing peptidase subunit beta
17 Sobic.003G216500 vacuolar ATP synthase, putative, expressed K03661: ATPeV0B, V-type H+-transporting ATPase 21kDa proteolipid subunit
18 Sobic.004G347600 vacuolar ATP synthase subunit H, putative, expressed K02144: V-type H+-transporting ATPase subunit H
19 Sobic.008G072200 coatomer subunit delta, putative, expressed -
20 Sobic.002G070600 coatomer subunit gamma-2, putative, expressed K17267: coatomer subunit gamma


Gene co-expression network
sample Sobic009G256000 Sobic009G256000 Sobic005G004100 Sobic005G004100 Sobic009G256000--Sobic005G004100 Sobic004G060100 Sobic004G060100 Sobic009G256000--Sobic004G060100 Sobic008G021200 Sobic008G021200 Sobic009G256000--Sobic008G021200 Sobic007G161200 Sobic007G161200 Sobic009G256000--Sobic007G161200 Sobic005G018800 Sobic005G018800 Sobic009G256000--Sobic005G018800 Sobic004G283600 Sobic004G283600 Sobic009G256000--Sobic004G283600 Sobic003G200800 Sobic003G200800 Sobic009G256000--Sobic003G200800 Sobic002G410700 Sobic002G410700 Sobic009G256000--Sobic002G410700 Sobic006G237200 Sobic006G237200 Sobic009G256000--Sobic006G237200 Sobic005G004100--Sobic009G256000 Sobic005G004100--Sobic004G060100 Sobic005G004100--Sobic004G283600 Sobic005G004100--Sobic005G018800 Sobic005G004100--Sobic007G161200 Sobic005G004100--Sobic008G021200 Sobic008G004300 Sobic008G004300 Sobic005G004100--Sobic008G004300 Sobic002G301200 Sobic002G301200 Sobic005G004100--Sobic002G301200 Sobic005G004100--Sobic002G410700 Sobic004G060100--Sobic008G021200 Sobic004G060100--Sobic007G161200 Sobic004G060100--Sobic005G018800 Sobic004G060100--Sobic009G256000 Sobic004G060100--Sobic003G200800 Sobic004G060100--Sobic004G283600 Sobic004G060100--Sobic005G004100 Sobic002G321400 Sobic002G321400 Sobic004G060100--Sobic002G321400 Sobic001G435400 Sobic001G435400 Sobic004G060100--Sobic001G435400 Sobic008G021200--Sobic005G018800 Sobic008G021200--Sobic004G060100 Sobic008G021200--Sobic003G200800 Sobic008G021200--Sobic009G256000 Sobic008G021200--Sobic007G161200 Sobic008G021200--Sobic004G283600 Sobic008G021200--Sobic006G237200 Sobic008G021200--Sobic005G004100 Sobic008G021200--Sobic002G321400 Sobic007G161200--Sobic004G060100 Sobic007G161200--Sobic003G200800 Sobic007G161200--Sobic005G018800 Sobic007G161200--Sobic009G256000 Sobic004G347600 Sobic004G347600 Sobic007G161200--Sobic004G347600 Sobic007G161200--Sobic008G021200 Sobic001G115700 Sobic001G115700 Sobic007G161200--Sobic001G115700 Sobic008G150300 Sobic008G150300 Sobic007G161200--Sobic008G150300 Sobic007G161200--Sobic004G283600 Sobic005G018800--Sobic003G200800 Sobic005G018800--Sobic008G021200 Sobic005G018800--Sobic004G060100 Sobic005G018800--Sobic007G161200 Sobic005G018800--Sobic009G256000 Sobic005G018800--Sobic001G115700 Sobic005G018800--Sobic004G283600 Sobic001G304000 Sobic001G304000 Sobic005G018800--Sobic001G304000 Sobic005G018800--Sobic005G004100 Sobic004G283600--Sobic009G256000 Sobic004G283600--Sobic004G060100 Sobic004G283600--Sobic007G161200 Sobic004G283600--Sobic005G018800 Sobic004G283600--Sobic005G004100 Sobic004G283600--Sobic008G021200 Sobic004G283600--Sobic003G200800 Sobic003G165101 Sobic003G165101 Sobic004G283600--Sobic003G165101 Sobic001G004200 Sobic001G004200 Sobic004G283600--Sobic001G004200 Sobic003G200800--Sobic005G018800 Sobic003G200800--Sobic007G161200 Sobic003G200800--Sobic008G021200 Sobic003G200800--Sobic004G060100 Sobic003G200800--Sobic001G115700 Sobic003G200800--Sobic009G256000 Sobic003G200800--Sobic004G283600 Sobic001G428800 Sobic001G428800 Sobic003G200800--Sobic001G428800 Sobic003G200800--Sobic004G347600 Sobic003G216500 Sobic003G216500 Sobic002G410700--Sobic003G216500 Sobic002G410700--Sobic006G237200 Sobic002G410700--Sobic009G256000 Sobic002G410700--Sobic008G150300 Sobic001G473400 Sobic001G473400 Sobic002G410700--Sobic001G473400 Sobic006G020900 Sobic006G020900 Sobic002G410700--Sobic006G020900 Sobic009G240700 Sobic009G240700 Sobic002G410700--Sobic009G240700 Sobic002G410700--Sobic007G161200 Sobic003G170300 Sobic003G170300 Sobic002G410700--Sobic003G170300 Sobic006G237200--Sobic002G410700 Sobic006G237200--Sobic009G256000 Sobic006G237200--Sobic008G021200 Sobic006G237200--Sobic007G161200 Sobic006G237200--Sobic003G216500 Sobic002G186300 Sobic002G186300 Sobic006G237200--Sobic002G186300 Sobic006G237200--Sobic006G020900 Sobic006G237200--Sobic005G018800 Sobic001G110300 Sobic001G110300 Sobic006G237200--Sobic001G110300
Octagon: transcription factors


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