Gene annotation
Transcriptome id Sobic.008G021200.1
Synonym ATVHA-C, DET3, Sb08g001880
Functional annotation vacuolar ATP synthase subunit C, putative, expressed
UniProt A0A1B6PAR6
Pfam PF03223
Panther DB PTHR10137
NCBI CDD KOG2909; Vacuolar H+-ATPase V1 sector, subunit C
KEGG Orthology K02148; ATPeV1C, V-type H+-transporting ATPase subunit C
Gene Ontology GO:0015078; proton transmembrane transporter activity


Orthologs (automatic annotation)
TAIR AT1G12840 : vacuolar ATP synthase subunit C (VATC) / V-ATPase C subunit / vacuolar proton pump C subunit (DET3)
RAP-DB (Rice) LOC_Os05g51530.2 : vacuolar ATP synthase subunit C, putative, expressed
MaizeGDB (Corn) Zm00025a036778 , Zm00025a044739 , Zm00025a028999
Brachypodium KQK04582
Barley HORVU1Hr1G094800.6 , HORVU1Hr1G094800.4 , HORVU1Hr1G094800.5 , HORVU1Hr1G094800.2 , HORVU1Hr1G094800.3 , HORVU1Hr1G094800.1
Wheat TraesCS1B02G475400 , TraesCS1B02G475400 , TraesCS1B02G475400 , TraesCS1A02G440200 , TraesCS1A02G440200 , TraesCS1D02G449200 , TraesCS1D02G449200 , TraesCS1D02G449200 , TraesCS1A02G282100 , TraesCS1B02G291300 , TraesCS1D02G281400
Populus -


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cDNA sequences
Sobic.008G021200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G018800 expressed protein -
2 Sobic.004G060100 ATP synthase, putative, expressed K02145: ATPeV1A, V-type H+-transporting ATPase subunit A
3 Sobic.003G200800 vacuolar ATP synthase subunit d, putative, expressed K02146: ATPeV0D, V-type H+-transporting ATPase subunit d
4 Sobic.009G256000 vacuolar ATP synthase subunit C, putative, expressed K02148: ATPeV1C, V-type H+-transporting ATPase subunit C
5 Sobic.007G161200 expressed protein -
6 Sobic.004G283600 O-acyltransferase, putative, expressed K13519: LPT1, lysophospholipid acyltransferase
7 Sobic.006G237200 vacuolar ATP synthase subunit D 1, putative, expressed K02149: ATPeV1D, V-type H+-transporting ATPase subunit D
8 Sobic.005G004100 outer membrane protein, OMP85 family, putative, expressed K07277: SAM50, TOB55, outer membrane protein insertion porin family
9 Sobic.002G321400 glutamate receptor, putative, expressed K05387: glutamate receptor, ionotropic, plant
10 Sobic.002G410700 vacuolar ATP synthase subunit F, putative, expressed K02151: ATPeV1F, V-type H+-transporting ATPase subunit F
11 Sobic.001G435400 vacuolar ATP synthase 98 kDa subunit, putative, expressed K02154: ATPeV0A, V-type H+-transporting ATPase subunit a
12 Sobic.002G291400 nicotinate-nucleotide pyrophosphorylase, putative, expressed K00767: nadC, nicotinate-nucleotide pyrophosphorylase (carboxylating)
13 Sobic.002G395500 ATP12 ATPase, putative, expressed K07556: ATPeAF2, ATPAF2, ATP synthase mitochondrial F1 complex assembly factor 2
14 Sobic.007G028500 expressed protein -
15 Sobic.007G162100 TENA/THI-4 family protein, putative, expressed -
16 Sobic.001G115700 2Fe-2S iron-sulfur cluster binding domain containing protein, expressed K03934: NADH dehydrogenase (ubiquinone) Fe-S protein 1
17 Sobic.006G039400 cation efflux family protein, putative, expressed K14696: SLC30A9, solute carrier family 30 (zinc transporter), member 9
18 Sobic.008G171400 phosphonate metabolism protein-related, putative, expressed -
19 Sobic.004G094700 ATP synthase, putative, expressed K02147: ATPeV1B, V-type H+-transporting ATPase subunit B
20 Sobic.003G260900 methyltransferase, putative, expressed -


Gene co-expression network
sample Sobic008G021200 Sobic008G021200 Sobic005G018800 Sobic005G018800 Sobic008G021200--Sobic005G018800 Sobic004G060100 Sobic004G060100 Sobic008G021200--Sobic004G060100 Sobic003G200800 Sobic003G200800 Sobic008G021200--Sobic003G200800 Sobic009G256000 Sobic009G256000 Sobic008G021200--Sobic009G256000 Sobic007G161200 Sobic007G161200 Sobic008G021200--Sobic007G161200 Sobic004G283600 Sobic004G283600 Sobic008G021200--Sobic004G283600 Sobic006G237200 Sobic006G237200 Sobic008G021200--Sobic006G237200 Sobic005G004100 Sobic005G004100 Sobic008G021200--Sobic005G004100 Sobic002G321400 Sobic002G321400 Sobic008G021200--Sobic002G321400 Sobic005G018800--Sobic003G200800 Sobic005G018800--Sobic008G021200 Sobic005G018800--Sobic004G060100 Sobic005G018800--Sobic007G161200 Sobic005G018800--Sobic009G256000 Sobic001G115700 Sobic001G115700 Sobic005G018800--Sobic001G115700 Sobic005G018800--Sobic004G283600 Sobic001G304000 Sobic001G304000 Sobic005G018800--Sobic001G304000 Sobic005G018800--Sobic005G004100 Sobic004G060100--Sobic008G021200 Sobic004G060100--Sobic007G161200 Sobic004G060100--Sobic005G018800 Sobic004G060100--Sobic009G256000 Sobic004G060100--Sobic003G200800 Sobic004G060100--Sobic004G283600 Sobic004G060100--Sobic005G004100 Sobic004G060100--Sobic002G321400 Sobic001G435400 Sobic001G435400 Sobic004G060100--Sobic001G435400 Sobic003G200800--Sobic005G018800 Sobic003G200800--Sobic007G161200 Sobic003G200800--Sobic008G021200 Sobic003G200800--Sobic004G060100 Sobic003G200800--Sobic001G115700 Sobic003G200800--Sobic009G256000 Sobic003G200800--Sobic004G283600 Sobic001G428800 Sobic001G428800 Sobic003G200800--Sobic001G428800 Sobic004G347600 Sobic004G347600 Sobic003G200800--Sobic004G347600 Sobic009G256000--Sobic005G004100 Sobic009G256000--Sobic004G060100 Sobic009G256000--Sobic008G021200 Sobic009G256000--Sobic007G161200 Sobic009G256000--Sobic005G018800 Sobic009G256000--Sobic004G283600 Sobic009G256000--Sobic003G200800 Sobic002G410700 Sobic002G410700 Sobic009G256000--Sobic002G410700 Sobic009G256000--Sobic006G237200 Sobic007G161200--Sobic004G060100 Sobic007G161200--Sobic003G200800 Sobic007G161200--Sobic005G018800 Sobic007G161200--Sobic009G256000 Sobic007G161200--Sobic004G347600 Sobic007G161200--Sobic008G021200 Sobic007G161200--Sobic001G115700 Sobic008G150300 Sobic008G150300 Sobic007G161200--Sobic008G150300 Sobic007G161200--Sobic004G283600 Sobic004G283600--Sobic009G256000 Sobic004G283600--Sobic004G060100 Sobic004G283600--Sobic007G161200 Sobic004G283600--Sobic005G018800 Sobic004G283600--Sobic005G004100 Sobic004G283600--Sobic008G021200 Sobic004G283600--Sobic003G200800 Sobic003G165101 Sobic003G165101 Sobic004G283600--Sobic003G165101 Sobic001G004200 Sobic001G004200 Sobic004G283600--Sobic001G004200 Sobic006G237200--Sobic002G410700 Sobic006G237200--Sobic009G256000 Sobic006G237200--Sobic008G021200 Sobic006G237200--Sobic007G161200 Sobic003G216500 Sobic003G216500 Sobic006G237200--Sobic003G216500 Sobic002G186300 Sobic002G186300 Sobic006G237200--Sobic002G186300 Sobic006G020900 Sobic006G020900 Sobic006G237200--Sobic006G020900 Sobic006G237200--Sobic005G018800 Sobic001G110300 Sobic001G110300 Sobic006G237200--Sobic001G110300 Sobic005G004100--Sobic009G256000 Sobic005G004100--Sobic004G060100 Sobic005G004100--Sobic004G283600 Sobic005G004100--Sobic005G018800 Sobic005G004100--Sobic007G161200 Sobic005G004100--Sobic008G021200 Sobic008G004300 Sobic008G004300 Sobic005G004100--Sobic008G004300 Sobic002G301200 Sobic002G301200 Sobic005G004100--Sobic002G301200 Sobic005G004100--Sobic002G410700 Sobic002G321400--Sobic004G060100 Sobic002G321400--Sobic008G021200 Sobic002G321400--Sobic009G256000 Sobic002G321400--Sobic005G018800 Sobic002G321400--Sobic001G435400 Sobic002G321400--Sobic007G161200 Sobic002G321400--Sobic002G301200 Sobic002G321400--Sobic004G283600 Sobic004G094700 Sobic004G094700 Sobic002G321400--Sobic004G094700
Octagon: transcription factors


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