Gene annotation
Transcriptome id Sobic.002G410700.1
Synonym Sb02g042380
Functional annotation vacuolar ATP synthase subunit F, putative, expressed
UniProt C5X4W8
Pfam PF01990
Panther DB PTHR13861 PTHR13861:SF4
NCBI CDD KOG3432; Vacuolar H+-ATPase V1 sector, subunit F
KEGG Orthology K02151; ATPeV1F, V-type H+-transporting ATPase subunit F
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G02620 : vacuolar ATPase subunit F family protein
RAP-DB (Rice) LOC_Os02g57854.1 : vacuolar ATP synthase subunit F, putative, expressed
MaizeGDB (Corn) Zm00025a049098 , Zm00025a015391
Brachypodium KQK08101 , KQK08102 , KQK08281
Barley HORVU3Hr1G047510.2 , HORVU3Hr1G047510.1
Wheat TraesCS3D02G204000 , TraesCS3A02G201100 , TraesCS3B02G224800
Populus -


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cDNA sequences
Sobic.002G410700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G216500 vacuolar ATP synthase, putative, expressed K03661: ATPeV0B, V-type H+-transporting ATPase 21kDa proteolipid subunit
2 Sobic.006G237200 vacuolar ATP synthase subunit D 1, putative, expressed K02149: ATPeV1D, V-type H+-transporting ATPase subunit D
3 Sobic.009G256000 vacuolar ATP synthase subunit C, putative, expressed K02148: ATPeV1C, V-type H+-transporting ATPase subunit C
4 Sobic.008G150300 Lg106, putative, expressed -
5 Sobic.001G473400 NADH dehydrogenase 1 alpha subcomplex subunit 13, putative, expressed K11353: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 13
6 Sobic.006G020900 phosphoglycerate mutase, putative, expressed -
7 Sobic.009G240700 -(PubMedID : 26976818)@lactate/malate dehydrogenase, putative, expressed K00026: malate dehydrogenase
8 Sobic.007G161200 expressed protein -
9 Sobic.003G170300 LYR motif containing protein, putative, expressed K03950: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 6
10 Sobic.006G058900 cytochrome b-c1 complex subunit Rieske, mitochondrial precursor, putative, expressed K00411: UQCRFS1, RIP1, ubiquinol-cytochrome c reductase iron-sulfur subunit
11 Sobic.008G021200 vacuolar ATP synthase subunit C, putative, expressed K02148: ATPeV1C, V-type H+-transporting ATPase subunit C
12 Sobic.001G282500 NADH dehydrogenase 1 alpha subcomplex subunit 12, putative, expressed K11352: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 12
13 Sobic.005G018800 expressed protein -
14 Sobic.003G200800 vacuolar ATP synthase subunit d, putative, expressed K02146: ATPeV0D, V-type H+-transporting ATPase subunit d
15 Sobic.002G186300 serine/threonine-protein kinase 16, putative, expressed K08856: serine/threonine kinase 16
16 Sobic.006G038200 receptor protein kinase, putative, expressed -
17 Sobic.005G004100 outer membrane protein, OMP85 family, putative, expressed K07277: SAM50, TOB55, outer membrane protein insertion porin family
18 Sobic.002G395000 bacterial transferase hexapeptide domain containing protein, expressed -
19 Sobic.009G191400 NADH dehydrogenase flavoprotein 2, mitochondrial precursor, putative, expressed K03943: NADH dehydrogenase (ubiquinone) flavoprotein 2
20 Sobic.004G347600 vacuolar ATP synthase subunit H, putative, expressed K02144: V-type H+-transporting ATPase subunit H


Gene co-expression network
sample Sobic002G410700 Sobic002G410700 Sobic003G216500 Sobic003G216500 Sobic002G410700--Sobic003G216500 Sobic006G237200 Sobic006G237200 Sobic002G410700--Sobic006G237200 Sobic009G256000 Sobic009G256000 Sobic002G410700--Sobic009G256000 Sobic008G150300 Sobic008G150300 Sobic002G410700--Sobic008G150300 Sobic001G473400 Sobic001G473400 Sobic002G410700--Sobic001G473400 Sobic006G020900 Sobic006G020900 Sobic002G410700--Sobic006G020900 Sobic009G240700 Sobic009G240700 Sobic002G410700--Sobic009G240700 Sobic007G161200 Sobic007G161200 Sobic002G410700--Sobic007G161200 Sobic003G170300 Sobic003G170300 Sobic002G410700--Sobic003G170300 Sobic003G216500--Sobic002G410700 Sobic004G182500 Sobic004G182500 Sobic003G216500--Sobic004G182500 Sobic003G216500--Sobic009G240700 Sobic003G216500--Sobic001G473400 Sobic003G216500--Sobic003G170300 Sobic002G073800 Sobic002G073800 Sobic003G216500--Sobic002G073800 Sobic003G279200 Sobic003G279200 Sobic003G216500--Sobic003G279200 Sobic003G216500--Sobic006G020900 Sobic001G290700 Sobic001G290700 Sobic003G216500--Sobic001G290700 Sobic006G237200--Sobic002G410700 Sobic006G237200--Sobic009G256000 Sobic008G021200 Sobic008G021200 Sobic006G237200--Sobic008G021200 Sobic006G237200--Sobic007G161200 Sobic006G237200--Sobic003G216500 Sobic002G186300 Sobic002G186300 Sobic006G237200--Sobic002G186300 Sobic006G237200--Sobic006G020900 Sobic005G018800 Sobic005G018800 Sobic006G237200--Sobic005G018800 Sobic001G110300 Sobic001G110300 Sobic006G237200--Sobic001G110300 Sobic005G004100 Sobic005G004100 Sobic009G256000--Sobic005G004100 Sobic004G060100 Sobic004G060100 Sobic009G256000--Sobic004G060100 Sobic009G256000--Sobic008G021200 Sobic009G256000--Sobic007G161200 Sobic009G256000--Sobic005G018800 Sobic004G283600 Sobic004G283600 Sobic009G256000--Sobic004G283600 Sobic003G200800 Sobic003G200800 Sobic009G256000--Sobic003G200800 Sobic009G256000--Sobic002G410700 Sobic009G256000--Sobic006G237200 Sobic008G150300--Sobic003G170300 Sobic001G281900 Sobic001G281900 Sobic008G150300--Sobic001G281900 Sobic001G338400 Sobic001G338400 Sobic008G150300--Sobic001G338400 Sobic001G458800 Sobic001G458800 Sobic008G150300--Sobic001G458800 Sobic008G150300--Sobic007G161200 Sobic008G150300--Sobic002G410700 Sobic005G105500 Sobic005G105500 Sobic008G150300--Sobic005G105500 Sobic007G159700 Sobic007G159700 Sobic008G150300--Sobic007G159700 Sobic006G211800 Sobic006G211800 Sobic008G150300--Sobic006G211800 Sobic010G258000 Sobic010G258000 Sobic001G473400--Sobic010G258000 Sobic001G473400--Sobic003G170300 Sobic009G016500 Sobic009G016500 Sobic001G473400--Sobic009G016500 Sobic001G473400--Sobic009G240700 Sobic003G388700 Sobic003G388700 Sobic001G473400--Sobic003G388700 Sobic001G473400--Sobic006G020900 Sobic001G282500 Sobic001G282500 Sobic001G473400--Sobic001G282500 Sobic002G395000 Sobic002G395000 Sobic001G473400--Sobic002G395000 Sobic002G308300 Sobic002G308300 Sobic001G473400--Sobic002G308300 Sobic006G020900--Sobic001G473400 Sobic006G020900--Sobic002G410700 Sobic006G020900--Sobic003G388700 Sobic006G020900--Sobic005G105500 Sobic004G291400 Sobic004G291400 Sobic006G020900--Sobic004G291400 Sobic001G304000 Sobic001G304000 Sobic006G020900--Sobic001G304000 Sobic006G020900--Sobic009G256000 Sobic003G392600 Sobic003G392600 Sobic006G020900--Sobic003G392600 Sobic006G020900--Sobic009G240700 Sobic009G240700--Sobic003G170300 Sobic004G155100 Sobic004G155100 Sobic009G240700--Sobic004G155100 Sobic003G238500 Sobic003G238500 Sobic009G240700--Sobic003G238500 Sobic009G240700--Sobic001G473400 Sobic009G240700--Sobic002G395000 Sobic002G078300 Sobic002G078300 Sobic009G240700--Sobic002G078300 Sobic001G286200 Sobic001G286200 Sobic009G240700--Sobic001G286200 Sobic010G264300 Sobic010G264300 Sobic009G240700--Sobic010G264300 Sobic009G240700--Sobic001G282500 Sobic007G161200--Sobic004G060100 Sobic007G161200--Sobic003G200800 Sobic007G161200--Sobic005G018800 Sobic007G161200--Sobic009G256000 Sobic004G347600 Sobic004G347600 Sobic007G161200--Sobic004G347600 Sobic007G161200--Sobic008G021200 Sobic001G115700 Sobic001G115700 Sobic007G161200--Sobic001G115700 Sobic007G161200--Sobic008G150300 Sobic007G161200--Sobic004G283600 Sobic003G170300--Sobic009G240700 Sobic003G170300--Sobic008G150300 Sobic003G170300--Sobic001G473400 Sobic003G170300--Sobic004G155100 Sobic004G282700 Sobic004G282700 Sobic003G170300--Sobic004G282700 Sobic002G180300 Sobic002G180300 Sobic003G170300--Sobic002G180300 Sobic003G170300--Sobic002G308300 Sobic003G170300--Sobic001G282500 Sobic003G170300--Sobic010G264300
Octagon: transcription factors


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