Gene annotation
Transcriptome id Sobic.006G058900.1
Synonym Sb06g014720
Functional annotation cytochrome b-c1 complex subunit Rieske, mitochondrial precursor, putative, expressed
UniProt C5YFA1
Pfam PF00355 PF02921
Panther DB PTHR10134 PTHR10134:SF1
NCBI CDD KOG1671; Ubiquinol cytochrome c reductase, subunit RIP1
KEGG Orthology K00411; UQCRFS1, RIP1, ubiquinol-cytochrome c reductase iron-sulfur subunit
Gene Ontology GO:0016491; oxidoreductase activity GO:0008121ubiquinol-cytochrome-c reductase activity GO:0016679oxidoreductase activity, acting on diphenols and related substances as donors


Orthologs (automatic annotation)
TAIR AT5G13430 : Ubiquinol-cytochrome C reductase iron-sulfur subunit
RAP-DB (Rice) LOC_Os04g32660.1 : cytochrome b-c1 complex subunit Rieske, mitochondrial precursor, putative, expressed
MaizeGDB (Corn) Zm00025a020465 , Zm00025a011660 , Zm00025a055950
Brachypodium KQJ82326
Barley HORVU2Hr1G071350.1 , HORVU2Hr1G071350.2 , HORVU2Hr1G071350.3 , HORVU2Hr1G071350.4 , HORVU2Hr1G071350.5 , HORVU2Hr1G071350.6 , HORVU2Hr1G071350.7 , HORVU6Hr1G051210.3 , HORVU6Hr1G051210.2 , HORVU6Hr1G051210.1 , HORVU6Hr1G051210.7 , HORVU6Hr1G051210.6 , HORVU6Hr1G051210.5 , HORVU6Hr1G051210.4
Wheat TraesCS2B02G305000 , TraesCS2A02G288200 , TraesCS2B02G305000 , TraesCS2D02G286500 , TraesCS2D02G286500 , TraesCS2A02G288200
Populus -


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cDNA sequences
Sobic.006G058900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G031900 ras-related protein, putative, expressed K07904: Ras-related protein Rab-11A
2 Sobic.001G458800 mitochondrial-processing peptidase subunit, mitochondrial precursor, putative, expressed K17732: PMPCB, mitochondrial-processing peptidase subunit beta
3 Sobic.004G202100 dehydrogenase, putative, expressed K00030: isocitrate dehydrogenase (NAD+)
4 Sobic.002G395000 bacterial transferase hexapeptide domain containing protein, expressed -
5 Sobic.007G171500 cytochrome c1-1, heme protein, mitochondrial precursor, putative, expressed K00413: CYC1, CYT1, ubiquinol-cytochrome c reductase cytochrome c1 subunit
6 Sobic.002G309500 ras-related protein, putative, expressed K07893: Ras-related protein Rab-6A
7 Sobic.004G344800 NADH dehydrogenase 1 alpha subcomplex subunit 9,mitochondrial precursor, putative, expressed K03953: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 9
8 Sobic.003G034900 mitochondrial-processing peptidase subunit alpha, mitochondrial precursor, putative, expressed K01412: PMPCA, mitochondrial-processing peptidase subunit alpha
9 Sobic.003G185500 expressed protein -
10 Sobic.002G262200 expressed protein -
11 Sobic.004G262300 thioredoxin reductase 2, putative, expressed K00384: trxB, thioredoxin reductase (NADPH)
12 Sobic.009G224400 ATP synthase, putative, expressed K02133: ATPeF1B, ATP5B, F-type H+-transporting ATPase subunit beta
13 Sobic.001G443200 transmembrane 9 superfamily member, putative, expressed K17087: transmembrane 9 superfamily member 3
14 Sobic.007G159700 expressed protein K02138: ATPeF0D, ATP5H, F-type H+-transporting ATPase subunit d
15 Sobic.004G244000 dehydrogenase E1 component domain containing protein, expressed K00161: PDHA, pyruvate dehydrogenase E1 component alpha subunit
16 Sobic.008G150300 Lg106, putative, expressed -
17 Sobic.001G112400 cytochrome c oxidase assembly protein COX11, mitochondrial precursor, putative, expressed K02258: COX11, cytochrome c oxidase assembly protein subunit 11
18 Sobic.002G186300 serine/threonine-protein kinase 16, putative, expressed K08856: serine/threonine kinase 16
19 Sobic.001G338400 glycosyl transferase 8 domain containing protein, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
20 Sobic.004G297700 ras-related protein, putative, expressed K07874: Ras-related protein Rab-1A


Gene co-expression network
sample Sobic006G058900 Sobic006G058900 Sobic001G031900 Sobic001G031900 Sobic006G058900--Sobic001G031900 Sobic001G458800 Sobic001G458800 Sobic006G058900--Sobic001G458800 Sobic004G202100 Sobic004G202100 Sobic006G058900--Sobic004G202100 Sobic002G395000 Sobic002G395000 Sobic006G058900--Sobic002G395000 Sobic007G171500 Sobic007G171500 Sobic006G058900--Sobic007G171500 Sobic002G309500 Sobic002G309500 Sobic006G058900--Sobic002G309500 Sobic004G344800 Sobic004G344800 Sobic006G058900--Sobic004G344800 Sobic003G034900 Sobic003G034900 Sobic006G058900--Sobic003G034900 Sobic003G185500 Sobic003G185500 Sobic006G058900--Sobic003G185500 Sobic001G031900--Sobic006G058900 Sobic001G031900--Sobic004G202100 Sobic001G031900--Sobic002G395000 Sobic001G350600 Sobic001G350600 Sobic001G031900--Sobic001G350600 Sobic001G031900--Sobic004G344800 Sobic003G152900 Sobic003G152900 Sobic001G031900--Sobic003G152900 Sobic004G170400 Sobic004G170400 Sobic001G031900--Sobic004G170400 Sobic001G031900--Sobic001G458800 Sobic004G030000 Sobic004G030000 Sobic001G031900--Sobic004G030000 Sobic001G458800--Sobic003G034900 Sobic009G224400 Sobic009G224400 Sobic001G458800--Sobic009G224400 Sobic001G458800--Sobic006G058900 Sobic001G115700 Sobic001G115700 Sobic001G458800--Sobic001G115700 Sobic001G458800--Sobic007G171500 Sobic001G073600 Sobic001G073600 Sobic001G458800--Sobic001G073600 Sobic002G186300 Sobic002G186300 Sobic001G458800--Sobic002G186300 Sobic001G458800--Sobic002G395000 Sobic001G458800--Sobic001G031900 Sobic004G202100--Sobic001G031900 Sobic004G202100--Sobic002G395000 Sobic004G262300 Sobic004G262300 Sobic004G202100--Sobic004G262300 Sobic004G202100--Sobic006G058900 Sobic001G282500 Sobic001G282500 Sobic004G202100--Sobic001G282500 Sobic006G231500 Sobic006G231500 Sobic004G202100--Sobic006G231500 Sobic004G202100--Sobic002G309500 Sobic004G297700 Sobic004G297700 Sobic004G202100--Sobic004G297700 Sobic007G023400 Sobic007G023400 Sobic004G202100--Sobic007G023400 Sobic004G260200 Sobic004G260200 Sobic002G395000--Sobic004G260200 Sobic003G135600 Sobic003G135600 Sobic002G395000--Sobic003G135600 Sobic002G395000--Sobic009G224400 Sobic003G238500 Sobic003G238500 Sobic002G395000--Sobic003G238500 Sobic002G309700 Sobic002G309700 Sobic002G395000--Sobic002G309700 Sobic002G395000--Sobic001G073600 Sobic004G155100 Sobic004G155100 Sobic002G395000--Sobic004G155100 Sobic002G395000--Sobic007G023400 Sobic002G078300 Sobic002G078300 Sobic002G395000--Sobic002G078300 Sobic007G171500--Sobic004G297700 Sobic007G171500--Sobic003G034900 Sobic007G171500--Sobic001G458800 Sobic007G171500--Sobic009G224400 Sobic010G032600 Sobic010G032600 Sobic007G171500--Sobic010G032600 Sobic007G171500--Sobic002G395000 Sobic007G171500--Sobic006G058900 Sobic009G191400 Sobic009G191400 Sobic007G171500--Sobic009G191400 Sobic001G457000 Sobic001G457000 Sobic007G171500--Sobic001G457000 Sobic002G309500--Sobic006G058900 Sobic002G309500--Sobic004G202100 Sobic001G050700 Sobic001G050700 Sobic002G309500--Sobic001G050700 Sobic007G159700 Sobic007G159700 Sobic002G309500--Sobic007G159700 Sobic002G309500--Sobic002G395000 Sobic002G309500--Sobic001G031900 Sobic002G309500--Sobic004G262300 Sobic003G322300 Sobic003G322300 Sobic002G309500--Sobic003G322300 Sobic002G309500--Sobic004G297700 Sobic004G344800--Sobic001G073600 Sobic004G344800--Sobic003G135600 Sobic004G159000 Sobic004G159000 Sobic004G344800--Sobic004G159000 Sobic001G035400 Sobic001G035400 Sobic004G344800--Sobic001G035400 Sobic004G344800--Sobic009G191400 Sobic004G344800--Sobic004G030000 Sobic002G262200 Sobic002G262200 Sobic004G344800--Sobic002G262200 Sobic002G396700 Sobic002G396700 Sobic004G344800--Sobic002G396700 Sobic004G344800--Sobic001G031900 Sobic003G034900--Sobic001G458800 Sobic001G465400 Sobic001G465400 Sobic003G034900--Sobic001G465400 Sobic004G093600 Sobic004G093600 Sobic003G034900--Sobic004G093600 Sobic003G034900--Sobic001G115700 Sobic001G047600 Sobic001G047600 Sobic003G034900--Sobic001G047600 Sobic003G034900--Sobic007G171500 Sobic003G034900--Sobic009G224400 Sobic004G347600 Sobic004G347600 Sobic003G034900--Sobic004G347600 Sobic003G034900--Sobic001G457000 Sobic003G185500--Sobic001G031900 Sobic003G185500--Sobic006G058900 Sobic003G141700 Sobic003G141700 Sobic003G185500--Sobic003G141700 Sobic003G185500--Sobic004G170400 Sobic001G074700 Sobic001G074700 Sobic003G185500--Sobic001G074700 Sobic007G114200 Sobic007G114200 Sobic003G185500--Sobic007G114200 Sobic003G185500--Sobic007G171500 Sobic007G019100 Sobic007G019100 Sobic003G185500--Sobic007G019100 Sobic001G342200 Sobic001G342200 Sobic003G185500--Sobic001G342200
Octagon: transcription factors


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