Gene annotation
Transcriptome id Sobic.003G185500.1
Synonym Sb03g024880
Functional annotation expressed protein
UniProt C5XN00
Pfam -
Panther DB PTHR35288 PTHR35288:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G11280 : -
RAP-DB (Rice) LOC_Os01g37480.1 : expressed protein
MaizeGDB (Corn) Zm00025a028803 , Zm00025a036460
Brachypodium KQK08295
Barley HORVU3Hr1G047860.1
Wheat TraesCS3D02G205100 , TraesCS3D02G205100 , TraesCS3D02G205100 , TraesCS3B02G227300 , TraesCS3A02G204100 , TraesCS3A02G204100 , TraesCS3A02G204100
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G031900 ras-related protein, putative, expressed K07904: Ras-related protein Rab-11A
2 Sobic.006G058900 cytochrome b-c1 complex subunit Rieske, mitochondrial precursor, putative, expressed K00411: UQCRFS1, RIP1, ubiquinol-cytochrome c reductase iron-sulfur subunit
3 Sobic.003G141700 50S ribosomal protein L15, putative, expressed K02876: RP-L15, MRPL15, large subunit ribosomal protein L15
4 Sobic.004G170400 ubiquinol-cytochrome C reductase hinge protein, putative, expressed K00416: QCR6, ubiquinol-cytochrome c reductase subunit 6
5 Sobic.001G074700 cytochrome c oxidase-related, putative, expressed K02266: cytochrome c oxidase subunit 6a
6 Sobic.007G114200 alpha-soluble NSF attachment protein, putative, expressed K15296: NAPA, SNAPA, alpha-soluble NSF attachment protein
7 Sobic.007G171500 cytochrome c1-1, heme protein, mitochondrial precursor, putative, expressed K00413: CYC1, CYT1, ubiquinol-cytochrome c reductase cytochrome c1 subunit
8 Sobic.007G019100 mitochondrial ribosomal protein S10, putative, expressed K02946: RP-S10, MRPS10, small subunit ribosomal protein S10
9 Sobic.001G342200 40S ribosomal protein S15a, putative, expressed K02957: RP-S15Ae, small subunit ribosomal protein S15Ae
10 Sobic.003G152900 -(PubMedID : 26976818)@dihydrolipoyl dehydrogenase 1, mitochondrial precursor, putative, expressed K00382: DLD, lpd, dihydrolipoamide dehydrogenase
11 Sobic.004G202100 dehydrogenase, putative, expressed K00030: isocitrate dehydrogenase (NAD+)
12 Sobic.001G350600 cytochrome c oxidase subunit, putative, expressed K02267: cytochrome c oxidase subunit 6b
13 Sobic.001G236300 cell division control protein 48 homolog E, putative, expressed K13525: VCP, transitional endoplasmic reticulum ATPase
14 Sobic.006G126000 26S proteasome non-ATPase regulatory subunit 6, putative, expressed K03037: PSMD6, 26S proteasome regulatory subunit N7
15 Sobic.002G395000 bacterial transferase hexapeptide domain containing protein, expressed -
16 Sobic.001G465800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@outer mitochondrial membrane porin, putative, expressed K15040: voltage-dependent anion channel protein 2
17 Sobic.001G178500 chloroplast 30S ribosomal protein S19, putative, expressed K02965: RP-S19, small subunit ribosomal protein S19
18 Sobic.006G207600 expressed protein -
19 Sobic.001G060300 expressed protein -
20 Sobic.003G330500 peptidase, T1 family, putative, expressed -


Gene co-expression network
sample Sobic003G185500 Sobic003G185500 Sobic001G031900 Sobic001G031900 Sobic003G185500--Sobic001G031900 Sobic006G058900 Sobic006G058900 Sobic003G185500--Sobic006G058900 Sobic003G141700 Sobic003G141700 Sobic003G185500--Sobic003G141700 Sobic004G170400 Sobic004G170400 Sobic003G185500--Sobic004G170400 Sobic001G074700 Sobic001G074700 Sobic003G185500--Sobic001G074700 Sobic007G114200 Sobic007G114200 Sobic003G185500--Sobic007G114200 Sobic007G171500 Sobic007G171500 Sobic003G185500--Sobic007G171500 Sobic007G019100 Sobic007G019100 Sobic003G185500--Sobic007G019100 Sobic001G342200 Sobic001G342200 Sobic003G185500--Sobic001G342200 Sobic001G031900--Sobic006G058900 Sobic004G202100 Sobic004G202100 Sobic001G031900--Sobic004G202100 Sobic002G395000 Sobic002G395000 Sobic001G031900--Sobic002G395000 Sobic001G350600 Sobic001G350600 Sobic001G031900--Sobic001G350600 Sobic004G344800 Sobic004G344800 Sobic001G031900--Sobic004G344800 Sobic003G152900 Sobic003G152900 Sobic001G031900--Sobic003G152900 Sobic001G031900--Sobic004G170400 Sobic001G458800 Sobic001G458800 Sobic001G031900--Sobic001G458800 Sobic004G030000 Sobic004G030000 Sobic001G031900--Sobic004G030000 Sobic006G058900--Sobic001G031900 Sobic006G058900--Sobic001G458800 Sobic006G058900--Sobic004G202100 Sobic006G058900--Sobic002G395000 Sobic006G058900--Sobic007G171500 Sobic002G309500 Sobic002G309500 Sobic006G058900--Sobic002G309500 Sobic006G058900--Sobic004G344800 Sobic003G034900 Sobic003G034900 Sobic006G058900--Sobic003G034900 Sobic006G058900--Sobic003G185500 Sobic001G224400 Sobic001G224400 Sobic003G141700--Sobic001G224400 Sobic003G141700--Sobic001G350600 Sobic003G141700--Sobic004G170400 Sobic004G339300 Sobic004G339300 Sobic003G141700--Sobic004G339300 Sobic003G141700--Sobic001G074700 Sobic009G119900 Sobic009G119900 Sobic003G141700--Sobic009G119900 Sobic003G141700--Sobic003G185500 Sobic003G141700--Sobic001G342200 Sobic003G141700--Sobic007G114200 Sobic004G170400--Sobic001G350600 Sobic004G259200 Sobic004G259200 Sobic004G170400--Sobic004G259200 Sobic004G170400--Sobic001G074700 Sobic001G465800 Sobic001G465800 Sobic004G170400--Sobic001G465800 Sobic004G170400--Sobic009G119900 Sobic002G356400 Sobic002G356400 Sobic004G170400--Sobic002G356400 Sobic003G209000 Sobic003G209000 Sobic004G170400--Sobic003G209000 Sobic004G310300 Sobic004G310300 Sobic004G170400--Sobic004G310300 Sobic002G418400 Sobic002G418400 Sobic004G170400--Sobic002G418400 Sobic001G074700--Sobic004G170400 Sobic001G074700--Sobic001G350600 Sobic001G074700--Sobic004G259200 Sobic002G309700 Sobic002G309700 Sobic001G074700--Sobic002G309700 Sobic010G154700 Sobic010G154700 Sobic001G074700--Sobic010G154700 Sobic002G296200 Sobic002G296200 Sobic001G074700--Sobic002G296200 Sobic001G074700--Sobic009G119900 Sobic001G047800 Sobic001G047800 Sobic001G074700--Sobic001G047800 Sobic001G074700--Sobic002G418400 Sobic007G045600 Sobic007G045600 Sobic007G114200--Sobic007G045600 Sobic003G367451 Sobic003G367451 Sobic007G114200--Sobic003G367451 Sobic001G236300 Sobic001G236300 Sobic007G114200--Sobic001G236300 Sobic009G001400 Sobic009G001400 Sobic007G114200--Sobic009G001400 Sobic002G428200 Sobic002G428200 Sobic007G114200--Sobic002G428200 Sobic006G252200 Sobic006G252200 Sobic007G114200--Sobic006G252200 Sobic002G214900 Sobic002G214900 Sobic007G114200--Sobic002G214900 Sobic004G327300 Sobic004G327300 Sobic007G114200--Sobic004G327300 Sobic004G138800 Sobic004G138800 Sobic007G114200--Sobic004G138800 Sobic004G297700 Sobic004G297700 Sobic007G171500--Sobic004G297700 Sobic007G171500--Sobic003G034900 Sobic007G171500--Sobic001G458800 Sobic009G224400 Sobic009G224400 Sobic007G171500--Sobic009G224400 Sobic010G032600 Sobic010G032600 Sobic007G171500--Sobic010G032600 Sobic007G171500--Sobic002G395000 Sobic007G171500--Sobic006G058900 Sobic009G191400 Sobic009G191400 Sobic007G171500--Sobic009G191400 Sobic001G457000 Sobic001G457000 Sobic007G171500--Sobic001G457000 Sobic007G019100--Sobic007G045600 Sobic001G132100 Sobic001G132100 Sobic007G019100--Sobic001G132100 Sobic003G323600 Sobic003G323600 Sobic007G019100--Sobic003G323600 Sobic007G019100--Sobic009G119900 Sobic001G048832 Sobic001G048832 Sobic007G019100--Sobic001G048832 Sobic007G019100--Sobic004G170400 Sobic007G019100--Sobic007G114200 Sobic007G019100--Sobic001G074700 Sobic007G019100--Sobic001G342200 Sobic001G057300 Sobic001G057300 Sobic001G342200--Sobic001G057300 Sobic001G060300 Sobic001G060300 Sobic001G342200--Sobic001G060300 Sobic007G177200 Sobic007G177200 Sobic001G342200--Sobic007G177200 Sobic007G115100 Sobic007G115100 Sobic001G342200--Sobic007G115100 Sobic007G092100 Sobic007G092100 Sobic001G342200--Sobic007G092100 Sobic010G008800 Sobic010G008800 Sobic001G342200--Sobic010G008800 Sobic001G342200--Sobic004G170400 Sobic001G342200--Sobic001G074700 Sobic001G342200--Sobic001G031900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.