Gene annotation
Transcriptome id Sobic.001G060300.1
Synonym Sb01g005470
Functional annotation expressed protein
UniProt C5WY19
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G53645 : hydroxyproline-rich glycoprotein family protein
RAP-DB (Rice) LOC_Os06g45390.1 : expressed protein
MaizeGDB (Corn) Zm00025a008531
Brachypodium KQK16994 , KQK16995 , KQK16996 , PNT75405
Barley HORVU7Hr1G109190.3 , HORVU7Hr1G109190.4 , HORVU7Hr1G109190.2
Wheat -
Populus -


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cDNA sequences
Sobic.001G060300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G342200 40S ribosomal protein S15a, putative, expressed K02957: RP-S15Ae, small subunit ribosomal protein S15Ae
2 Sobic.001G178500 chloroplast 30S ribosomal protein S19, putative, expressed K02965: RP-S19, small subunit ribosomal protein S19
3 Sobic.001G214900 expressed protein -
4 Sobic.004G262300 thioredoxin reductase 2, putative, expressed K00384: trxB, thioredoxin reductase (NADPH)
5 Sobic.009G112900 expressed protein K18170: LYRM7, complex III assembly factor LYRM7
6 Sobic.002G402500 ribosomal protein, putative, expressed K02996: RP-S9, MRPS9, small subunit ribosomal protein S9
7 Sobic.008G136800 mitochondrial import inner membrane translocase subunit Tim, putative, expressed K17777: mitochondrial import inner membrane translocase subunit TIM9
8 Sobic.010G194200 expressed protein -
9 Sobic.009G012800 mitochondrial import inner membrane translocase subunit Tim, putative, expressed K17777: mitochondrial import inner membrane translocase subunit TIM9
10 Sobic.001G031900 ras-related protein, putative, expressed K07904: Ras-related protein Rab-11A
11 Sobic.003G326900 expressed protein -
12 Sobic.001G451901 - -
13 Sobic.007G119600 clathrin adaptor complex small chain domain containing protein, expressed K12403: AP-4 complex subunit sigma-1
14 Sobic.002G395000 bacterial transferase hexapeptide domain containing protein, expressed -
15 Sobic.001G387800 outer mitochondrial membrane porin, putative, expressed K11518: mitochondrial import receptor subunit TOM40
16 Sobic.002G262200 expressed protein -
17 Sobic.004G202100 dehydrogenase, putative, expressed K00030: isocitrate dehydrogenase (NAD+)
18 Sobic.002G079700 ribosomal protein L22, putative, expressed K02890: RP-L22, MRPL22, large subunit ribosomal protein L22
19 Sobic.003G261100 WD repeat-containing protein, putative, expressed K14753: guanine nucleotide-binding protein subunit beta-2-like 1 protein
20 Sobic.004G248900 50S ribosomal protein L17, putative, expressed K02879: RP-L17, MRPL17, large subunit ribosomal protein L17


Gene co-expression network
sample Sobic001G060300 Sobic001G060300 Sobic001G342200 Sobic001G342200 Sobic001G060300--Sobic001G342200 Sobic001G178500 Sobic001G178500 Sobic001G060300--Sobic001G178500 Sobic001G214900 Sobic001G214900 Sobic001G060300--Sobic001G214900 Sobic004G262300 Sobic004G262300 Sobic001G060300--Sobic004G262300 Sobic009G112900 Sobic009G112900 Sobic001G060300--Sobic009G112900 Sobic002G402500 Sobic002G402500 Sobic001G060300--Sobic002G402500 Sobic008G136800 Sobic008G136800 Sobic001G060300--Sobic008G136800 Sobic010G194200 Sobic010G194200 Sobic001G060300--Sobic010G194200 Sobic009G012800 Sobic009G012800 Sobic001G060300--Sobic009G012800 Sobic001G057300 Sobic001G057300 Sobic001G342200--Sobic001G057300 Sobic001G342200--Sobic001G060300 Sobic007G177200 Sobic007G177200 Sobic001G342200--Sobic007G177200 Sobic007G115100 Sobic007G115100 Sobic001G342200--Sobic007G115100 Sobic007G092100 Sobic007G092100 Sobic001G342200--Sobic007G092100 Sobic010G008800 Sobic010G008800 Sobic001G342200--Sobic010G008800 Sobic004G170400 Sobic004G170400 Sobic001G342200--Sobic004G170400 Sobic001G074700 Sobic001G074700 Sobic001G342200--Sobic001G074700 Sobic001G031900 Sobic001G031900 Sobic001G342200--Sobic001G031900 Sobic002G079700 Sobic002G079700 Sobic001G178500--Sobic002G079700 Sobic001G387800 Sobic001G387800 Sobic001G178500--Sobic001G387800 Sobic001G178500--Sobic001G060300 Sobic010G040900 Sobic010G040900 Sobic001G178500--Sobic010G040900 Sobic007G119600 Sobic007G119600 Sobic001G178500--Sobic007G119600 Sobic003G135600 Sobic003G135600 Sobic001G178500--Sobic003G135600 Sobic009G191400 Sobic009G191400 Sobic001G178500--Sobic009G191400 Sobic007G171500 Sobic007G171500 Sobic001G178500--Sobic007G171500 Sobic001G443200 Sobic001G443200 Sobic001G178500--Sobic001G443200 Sobic001G214900--Sobic001G060300 Sobic002G367800 Sobic002G367800 Sobic001G214900--Sobic002G367800 Sobic003G261100 Sobic003G261100 Sobic001G214900--Sobic003G261100 Sobic003G205400 Sobic003G205400 Sobic001G214900--Sobic003G205400 Sobic010G134100 Sobic010G134100 Sobic001G214900--Sobic010G134100 Sobic010G277000 Sobic010G277000 Sobic001G214900--Sobic010G277000 Sobic007G143000 Sobic007G143000 Sobic001G214900--Sobic007G143000 Sobic001G214900--Sobic002G402500 Sobic001G530800 Sobic001G530800 Sobic001G214900--Sobic001G530800 Sobic004G202100 Sobic004G202100 Sobic004G262300--Sobic004G202100 Sobic004G262300--Sobic001G060300 Sobic004G262300--Sobic001G342200 Sobic004G262300--Sobic001G031900 Sobic010G038700 Sobic010G038700 Sobic004G262300--Sobic010G038700 Sobic009G001900 Sobic009G001900 Sobic004G262300--Sobic009G001900 Sobic004G066800 Sobic004G066800 Sobic004G262300--Sobic004G066800 Sobic002G131600 Sobic002G131600 Sobic004G262300--Sobic002G131600 Sobic004G262300--Sobic007G092100 Sobic008G102600 Sobic008G102600 Sobic009G112900--Sobic008G102600 Sobic001G518500 Sobic001G518500 Sobic009G112900--Sobic001G518500 Sobic009G112900--Sobic001G060300 Sobic002G262200 Sobic002G262200 Sobic009G112900--Sobic002G262200 Sobic008G175100 Sobic008G175100 Sobic009G112900--Sobic008G175100 Sobic004G159000 Sobic004G159000 Sobic009G112900--Sobic004G159000 Sobic003G196600 Sobic003G196600 Sobic009G112900--Sobic003G196600 Sobic009G112900--Sobic001G342200 Sobic010G007400 Sobic010G007400 Sobic009G112900--Sobic010G007400 Sobic003G326900 Sobic003G326900 Sobic002G402500--Sobic003G326900 Sobic002G402500--Sobic003G205400 Sobic003G388900 Sobic003G388900 Sobic002G402500--Sobic003G388900 Sobic002G402500--Sobic001G060300 Sobic002G402500--Sobic001G214900 Sobic001G522000 Sobic001G522000 Sobic002G402500--Sobic001G522000 Sobic006G041100 Sobic006G041100 Sobic002G402500--Sobic006G041100 Sobic002G402500--Sobic002G367800 Sobic003G113400 Sobic003G113400 Sobic002G402500--Sobic003G113400 Sobic006G203900 Sobic006G203900 Sobic008G136800--Sobic006G203900 Sobic008G136800--Sobic009G001900 Sobic009G211900 Sobic009G211900 Sobic008G136800--Sobic009G211900 Sobic007G013900 Sobic007G013900 Sobic008G136800--Sobic007G013900 Sobic001G031800 Sobic001G031800 Sobic008G136800--Sobic001G031800 Sobic006G124300 Sobic006G124300 Sobic008G136800--Sobic006G124300 Sobic007G141100 Sobic007G141100 Sobic008G136800--Sobic007G141100 Sobic002G296200 Sobic002G296200 Sobic008G136800--Sobic002G296200 Sobic003G074900 Sobic003G074900 Sobic008G136800--Sobic003G074900 Sobic001G129400 Sobic001G129400 Sobic010G194200--Sobic001G129400 Sobic010G194200--Sobic001G060300 Sobic010G194200--Sobic003G326900 Sobic001G451901 Sobic001G451901 Sobic010G194200--Sobic001G451901 Sobic001G473400 Sobic001G473400 Sobic010G194200--Sobic001G473400 Sobic005G132700 Sobic005G132700 Sobic010G194200--Sobic005G132700 Sobic004G106700 Sobic004G106700 Sobic010G194200--Sobic004G106700 Sobic006G153200 Sobic006G153200 Sobic010G194200--Sobic006G153200 Sobic001G110300 Sobic001G110300 Sobic010G194200--Sobic001G110300 Sobic009G012800--Sobic001G342200 Sobic009G012800--Sobic001G060300 Sobic009G012800--Sobic010G008800 Sobic009G012800--Sobic004G262300 Sobic009G012800--Sobic001G214900 Sobic009G012800--Sobic003G261100 Sobic001G030300 Sobic001G030300 Sobic009G012800--Sobic001G030300 Sobic009G012800--Sobic001G057300 Sobic003G237400 Sobic003G237400 Sobic009G012800--Sobic003G237400
Octagon: transcription factors


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