Gene annotation
Transcriptome id Sobic.002G079700.1
Synonym
Functional annotation ribosomal protein L22, putative, expressed
UniProt A0A1B6Q9U9 , A0A109NCY4 , A1E9W4
Pfam PF00237
Panther DB PTHR13501 PTHR13501:SF2
NCBI CDD KOG1711; Mitochondrial/chloroplast ribosomal protein L22
KEGG Orthology K02890; RP-L22, MRPL22, large subunit ribosomal protein L22
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0003735structural constituent of ribosome GO:0015934large ribosomal subunit


Orthologs (automatic annotation)
TAIR AT4G28360 : Ribosomal protein L22p/L17e family protein
RAP-DB (Rice) LOC_Os01g42980.1 : ribosomal protein L22, putative, expressed
MaizeGDB (Corn) Zm00025a009037 , Zm00025a013396
Brachypodium PNT61813 , KQJ84482
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.002G079700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G178500 chloroplast 30S ribosomal protein S19, putative, expressed K02965: RP-S19, small subunit ribosomal protein S19
2 Sobic.003G135600 bacterial transferase hexapeptide domain containing protein, expressed -
3 Sobic.004G039400 Constitutively expressed genes(PubMedID : 24456189)@- K03257: translation initiation factor 4A
4 Sobic.001G008100 expressed protein K17966: transmembrane protein 70, mitochondrial
5 Sobic.009G191400 NADH dehydrogenase flavoprotein 2, mitochondrial precursor, putative, expressed K03943: NADH dehydrogenase (ubiquinone) flavoprotein 2
6 Sobic.004G045300 60S ribosomal protein L19-3, putative, expressed K02885: RP-L19e, large subunit ribosomal protein L19e
7 Sobic.009G224400 ATP synthase, putative, expressed K02133: ATPeF1B, ATP5B, F-type H+-transporting ATPase subunit beta
8 Sobic.003G388700 ribosomal protein L13, putative, expressed K02871: RP-L13, MRPL13, large subunit ribosomal protein L13
9 Sobic.001G073600 4Fe-4S binding domain containing protein, expressed K03941: NADH dehydrogenase (ubiquinone) Fe-S protein 8
10 Sobic.002G262200 expressed protein -
11 Sobic.007G171500 cytochrome c1-1, heme protein, mitochondrial precursor, putative, expressed K00413: CYC1, CYT1, ubiquinol-cytochrome c reductase cytochrome c1 subunit
12 Sobic.001G387800 outer mitochondrial membrane porin, putative, expressed K11518: mitochondrial import receptor subunit TOM40
13 Sobic.001G518500 adenylate kinase, putative, expressed K00939: adk, adenylate kinase
14 Sobic.007G012900 50S ribosomal protein L19, chloroplast precursor, putative, expressed -
15 Sobic.007G119600 clathrin adaptor complex small chain domain containing protein, expressed K12403: AP-4 complex subunit sigma-1
16 Sobic.006G124300 metalloprotease ATP23, putative, expressed K18156: ATP23, mitochondrial inner membrane protease ATP23
17 Sobic.010G040900 trafficking protein particle complex subunit 4, putative, expressed -
18 Sobic.008G018300 expressed protein K17402: small subunit ribosomal protein S23
19 Sobic.001G387200 expressed protein -
20 Sobic.009G112900 expressed protein K18170: LYRM7, complex III assembly factor LYRM7


Gene co-expression network
sample Sobic002G079700 Sobic002G079700 Sobic001G178500 Sobic001G178500 Sobic002G079700--Sobic001G178500 Sobic003G135600 Sobic003G135600 Sobic002G079700--Sobic003G135600 Sobic004G039400 Sobic004G039400 Sobic002G079700--Sobic004G039400 Sobic001G008100 Sobic001G008100 Sobic002G079700--Sobic001G008100 Sobic009G191400 Sobic009G191400 Sobic002G079700--Sobic009G191400 Sobic004G045300 Sobic004G045300 Sobic002G079700--Sobic004G045300 Sobic009G224400 Sobic009G224400 Sobic002G079700--Sobic009G224400 Sobic003G388700 Sobic003G388700 Sobic002G079700--Sobic003G388700 Sobic001G073600 Sobic001G073600 Sobic002G079700--Sobic001G073600 Sobic001G178500--Sobic002G079700 Sobic001G387800 Sobic001G387800 Sobic001G178500--Sobic001G387800 Sobic001G060300 Sobic001G060300 Sobic001G178500--Sobic001G060300 Sobic010G040900 Sobic010G040900 Sobic001G178500--Sobic010G040900 Sobic007G119600 Sobic007G119600 Sobic001G178500--Sobic007G119600 Sobic001G178500--Sobic003G135600 Sobic001G178500--Sobic009G191400 Sobic007G171500 Sobic007G171500 Sobic001G178500--Sobic007G171500 Sobic001G443200 Sobic001G443200 Sobic001G178500--Sobic001G443200 Sobic004G155100 Sobic004G155100 Sobic003G135600--Sobic004G155100 Sobic002G395000 Sobic002G395000 Sobic003G135600--Sobic002G395000 Sobic003G135600--Sobic001G073600 Sobic003G135600--Sobic009G224400 Sobic002G309700 Sobic002G309700 Sobic003G135600--Sobic002G309700 Sobic003G135600--Sobic009G191400 Sobic001G181500 Sobic001G181500 Sobic003G135600--Sobic001G181500 Sobic009G211900 Sobic009G211900 Sobic003G135600--Sobic009G211900 Sobic004G260200 Sobic004G260200 Sobic003G135600--Sobic004G260200 Sobic004G039400--Sobic001G008100 Sobic004G039400--Sobic001G073600 Sobic004G039400--Sobic010G040900 Sobic004G039400--Sobic001G443200 Sobic002G262200 Sobic002G262200 Sobic004G039400--Sobic002G262200 Sobic004G039400--Sobic009G191400 Sobic004G344800 Sobic004G344800 Sobic004G039400--Sobic004G344800 Sobic001G387200 Sobic001G387200 Sobic004G039400--Sobic001G387200 Sobic004G039400--Sobic002G079700 Sobic001G008100--Sobic004G039400 Sobic006G041800 Sobic006G041800 Sobic001G008100--Sobic006G041800 Sobic001G465400 Sobic001G465400 Sobic001G008100--Sobic001G465400 Sobic001G008100--Sobic010G040900 Sobic001G008100--Sobic001G387800 Sobic003G276100 Sobic003G276100 Sobic001G008100--Sobic003G276100 Sobic001G008100--Sobic002G079700 Sobic001G008100--Sobic009G191400 Sobic002G276800 Sobic002G276800 Sobic001G008100--Sobic002G276800 Sobic009G191400--Sobic001G073600 Sobic009G191400--Sobic009G224400 Sobic004G347600 Sobic004G347600 Sobic009G191400--Sobic004G347600 Sobic009G191400--Sobic007G119600 Sobic009G191400--Sobic003G135600 Sobic009G191400--Sobic004G344800 Sobic009G191400--Sobic002G262200 Sobic001G458800 Sobic001G458800 Sobic009G191400--Sobic001G458800 Sobic002G396700 Sobic002G396700 Sobic009G191400--Sobic002G396700 Sobic004G045300--Sobic002G079700 Sobic003G196200 Sobic003G196200 Sobic004G045300--Sobic003G196200 Sobic008G102600 Sobic008G102600 Sobic004G045300--Sobic008G102600 Sobic004G045300--Sobic001G387800 Sobic004G045300--Sobic001G178500 Sobic004G045300--Sobic004G039400 Sobic004G045300--Sobic001G073600 Sobic007G012900 Sobic007G012900 Sobic004G045300--Sobic007G012900 Sobic004G045300--Sobic010G040900 Sobic009G224400--Sobic001G073600 Sobic009G224400--Sobic009G191400 Sobic009G224400--Sobic002G395000 Sobic009G224400--Sobic007G119600 Sobic009G224400--Sobic003G135600 Sobic009G224400--Sobic001G458800 Sobic009G224400--Sobic004G155100 Sobic003G034900 Sobic003G034900 Sobic009G224400--Sobic003G034900 Sobic009G224400--Sobic002G262200 Sobic003G388700--Sobic007G119600 Sobic003G388700--Sobic001G073600 Sobic003G388700--Sobic003G135600 Sobic003G388700--Sobic009G191400 Sobic003G388700--Sobic002G079700 Sobic001G473400 Sobic001G473400 Sobic003G388700--Sobic001G473400 Sobic010G002800 Sobic010G002800 Sobic003G388700--Sobic010G002800 Sobic010G258000 Sobic010G258000 Sobic003G388700--Sobic010G258000 Sobic003G388700--Sobic006G041800 Sobic001G073600--Sobic009G191400 Sobic001G073600--Sobic009G224400 Sobic001G073600--Sobic003G135600 Sobic001G073600--Sobic002G395000 Sobic001G073600--Sobic004G344800 Sobic001G073600--Sobic007G119600 Sobic001G073600--Sobic004G347600 Sobic001G073600--Sobic001G458800 Sobic001G073600--Sobic004G155100
Octagon: transcription factors


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