Gene annotation
Transcriptome id Sobic.001G178500.1
Synonym RPS19
Functional annotation chloroplast 30S ribosomal protein S19, putative, expressed
UniProt A0A1B6QJJ0 , A0A109NDI4 , A1E9Q3
Pfam PF00203
Panther DB PTHR11880 PTHR11880:SF8
NCBI CDD KOG0899; Mitochondrial/chloroplast ribosomal protein S19
KEGG Orthology K02965; RP-S19, small subunit ribosomal protein S19
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT5G47320 : ribosomal protein S19
RAP-DB (Rice) LOC_Os08g15266.1 : chloroplast 30S ribosomal protein S19, putative
MaizeGDB (Corn) Zm00025a007132 , Zm00025a017351
Brachypodium -
Barley HORVU4Hr1G073300.1
Wheat TraesCS1A02G011100 , TraesCS3D02G537000 , TraesCS3B02G602100
Populus PNT08142 , PNT08141 , PNT08140


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G079700 ribosomal protein L22, putative, expressed K02890: RP-L22, MRPL22, large subunit ribosomal protein L22
2 Sobic.001G387800 outer mitochondrial membrane porin, putative, expressed K11518: mitochondrial import receptor subunit TOM40
3 Sobic.001G060300 expressed protein -
4 Sobic.010G040900 trafficking protein particle complex subunit 4, putative, expressed -
5 Sobic.007G119600 clathrin adaptor complex small chain domain containing protein, expressed K12403: AP-4 complex subunit sigma-1
6 Sobic.003G135600 bacterial transferase hexapeptide domain containing protein, expressed -
7 Sobic.009G191400 NADH dehydrogenase flavoprotein 2, mitochondrial precursor, putative, expressed K03943: NADH dehydrogenase (ubiquinone) flavoprotein 2
8 Sobic.007G171500 cytochrome c1-1, heme protein, mitochondrial precursor, putative, expressed K00413: CYC1, CYT1, ubiquinol-cytochrome c reductase cytochrome c1 subunit
9 Sobic.001G443200 transmembrane 9 superfamily member, putative, expressed K17087: transmembrane 9 superfamily member 3
10 Sobic.001G073600 4Fe-4S binding domain containing protein, expressed K03941: NADH dehydrogenase (ubiquinone) Fe-S protein 8
11 Sobic.004G039400 Constitutively expressed genes(PubMedID : 24456189)@- K03257: translation initiation factor 4A
12 Sobic.001G008100 expressed protein K17966: transmembrane protein 70, mitochondrial
13 Sobic.003G276100 ras-related protein, putative, expressed K07897: Ras-related protein Rab-7A
14 Sobic.002G262200 expressed protein -
15 Sobic.007G012900 50S ribosomal protein L19, chloroplast precursor, putative, expressed -
16 Sobic.003G388700 ribosomal protein L13, putative, expressed K02871: RP-L13, MRPL13, large subunit ribosomal protein L13
17 Sobic.003G196200 elongation factor TS family protein, expressed -
18 Sobic.006G041800 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed -
19 Sobic.006G203900 vacuolar ATPase G subunit, putative, expressed K02152: ATPeV1G, V-type H+-transporting ATPase subunit G
20 Sobic.001G112400 cytochrome c oxidase assembly protein COX11, mitochondrial precursor, putative, expressed K02258: COX11, cytochrome c oxidase assembly protein subunit 11


Gene co-expression network
sample Sobic001G178500 Sobic001G178500 Sobic002G079700 Sobic002G079700 Sobic001G178500--Sobic002G079700 Sobic001G387800 Sobic001G387800 Sobic001G178500--Sobic001G387800 Sobic001G060300 Sobic001G060300 Sobic001G178500--Sobic001G060300 Sobic010G040900 Sobic010G040900 Sobic001G178500--Sobic010G040900 Sobic007G119600 Sobic007G119600 Sobic001G178500--Sobic007G119600 Sobic003G135600 Sobic003G135600 Sobic001G178500--Sobic003G135600 Sobic009G191400 Sobic009G191400 Sobic001G178500--Sobic009G191400 Sobic007G171500 Sobic007G171500 Sobic001G178500--Sobic007G171500 Sobic001G443200 Sobic001G443200 Sobic001G178500--Sobic001G443200 Sobic002G079700--Sobic001G178500 Sobic002G079700--Sobic003G135600 Sobic004G039400 Sobic004G039400 Sobic002G079700--Sobic004G039400 Sobic001G008100 Sobic001G008100 Sobic002G079700--Sobic001G008100 Sobic002G079700--Sobic009G191400 Sobic004G045300 Sobic004G045300 Sobic002G079700--Sobic004G045300 Sobic009G224400 Sobic009G224400 Sobic002G079700--Sobic009G224400 Sobic003G388700 Sobic003G388700 Sobic002G079700--Sobic003G388700 Sobic001G073600 Sobic001G073600 Sobic002G079700--Sobic001G073600 Sobic003G196200 Sobic003G196200 Sobic001G387800--Sobic003G196200 Sobic001G387800--Sobic001G178500 Sobic001G387800--Sobic001G008100 Sobic001G387800--Sobic004G039400 Sobic001G387800--Sobic007G119600 Sobic001G387800--Sobic009G191400 Sobic001G387800--Sobic002G079700 Sobic007G206300 Sobic007G206300 Sobic001G387800--Sobic007G206300 Sobic001G465400 Sobic001G465400 Sobic001G387800--Sobic001G465400 Sobic001G342200 Sobic001G342200 Sobic001G060300--Sobic001G342200 Sobic001G060300--Sobic001G178500 Sobic001G214900 Sobic001G214900 Sobic001G060300--Sobic001G214900 Sobic004G262300 Sobic004G262300 Sobic001G060300--Sobic004G262300 Sobic009G112900 Sobic009G112900 Sobic001G060300--Sobic009G112900 Sobic002G402500 Sobic002G402500 Sobic001G060300--Sobic002G402500 Sobic008G136800 Sobic008G136800 Sobic001G060300--Sobic008G136800 Sobic010G194200 Sobic010G194200 Sobic001G060300--Sobic010G194200 Sobic009G012800 Sobic009G012800 Sobic001G060300--Sobic009G012800 Sobic010G040900--Sobic004G039400 Sobic010G040900--Sobic001G443200 Sobic010G040900--Sobic009G191400 Sobic010G040900--Sobic001G008100 Sobic010G040900--Sobic001G178500 Sobic006G126000 Sobic006G126000 Sobic010G040900--Sobic006G126000 Sobic003G261800 Sobic003G261800 Sobic010G040900--Sobic003G261800 Sobic010G040900--Sobic003G135600 Sobic004G344800 Sobic004G344800 Sobic010G040900--Sobic004G344800 Sobic007G119600--Sobic009G224400 Sobic007G119600--Sobic009G191400 Sobic006G041800 Sobic006G041800 Sobic007G119600--Sobic006G041800 Sobic001G457000 Sobic001G457000 Sobic007G119600--Sobic001G457000 Sobic007G119600--Sobic001G073600 Sobic002G255400 Sobic002G255400 Sobic007G119600--Sobic002G255400 Sobic003G028200 Sobic003G028200 Sobic007G119600--Sobic003G028200 Sobic007G119600--Sobic003G388700 Sobic003G260600 Sobic003G260600 Sobic007G119600--Sobic003G260600 Sobic004G155100 Sobic004G155100 Sobic003G135600--Sobic004G155100 Sobic002G395000 Sobic002G395000 Sobic003G135600--Sobic002G395000 Sobic003G135600--Sobic001G073600 Sobic003G135600--Sobic009G224400 Sobic002G309700 Sobic002G309700 Sobic003G135600--Sobic002G309700 Sobic003G135600--Sobic009G191400 Sobic001G181500 Sobic001G181500 Sobic003G135600--Sobic001G181500 Sobic009G211900 Sobic009G211900 Sobic003G135600--Sobic009G211900 Sobic004G260200 Sobic004G260200 Sobic003G135600--Sobic004G260200 Sobic009G191400--Sobic001G073600 Sobic009G191400--Sobic009G224400 Sobic004G347600 Sobic004G347600 Sobic009G191400--Sobic004G347600 Sobic009G191400--Sobic007G119600 Sobic009G191400--Sobic003G135600 Sobic009G191400--Sobic004G344800 Sobic002G262200 Sobic002G262200 Sobic009G191400--Sobic002G262200 Sobic001G458800 Sobic001G458800 Sobic009G191400--Sobic001G458800 Sobic002G396700 Sobic002G396700 Sobic009G191400--Sobic002G396700 Sobic004G297700 Sobic004G297700 Sobic007G171500--Sobic004G297700 Sobic003G034900 Sobic003G034900 Sobic007G171500--Sobic003G034900 Sobic007G171500--Sobic001G458800 Sobic007G171500--Sobic009G224400 Sobic010G032600 Sobic010G032600 Sobic007G171500--Sobic010G032600 Sobic007G171500--Sobic002G395000 Sobic006G058900 Sobic006G058900 Sobic007G171500--Sobic006G058900 Sobic007G171500--Sobic009G191400 Sobic007G171500--Sobic001G457000 Sobic008G102600 Sobic008G102600 Sobic001G443200--Sobic008G102600 Sobic004G000100 Sobic004G000100 Sobic001G443200--Sobic004G000100 Sobic001G443200--Sobic004G039400 Sobic001G112400 Sobic001G112400 Sobic001G443200--Sobic001G112400 Sobic001G443200--Sobic004G344800 Sobic002G141700 Sobic002G141700 Sobic001G443200--Sobic002G141700 Sobic001G443200--Sobic010G040900 Sobic001G443200--Sobic001G073600 Sobic001G443200--Sobic002G262200
Octagon: transcription factors


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