Gene annotation
Transcriptome id Sobic.001G112400.1
Synonym Sb01g010010
Functional annotation cytochrome c oxidase assembly protein COX11, mitochondrial precursor, putative, expressed
UniProt C5WMZ8
Pfam PF04442
Panther DB PTHR21320 PTHR21320:SF3
NCBI CDD -
KEGG Orthology K02258; COX11, cytochrome c oxidase assembly protein subunit 11
Gene Ontology GO:0005507; copper ion binding


Orthologs (automatic annotation)
TAIR AT1G02410 : cytochrome c oxidase assembly protein CtaG / Cox11 family
RAP-DB (Rice) LOC_Os03g50940.1 : cytochrome c oxidase assembly protein COX11, mitochondrial precursor, putative, expressed
MaizeGDB (Corn) Zm00025a007903
Brachypodium KQK13505
Barley HORVU4Hr1G008450.1 , HORVU4Hr1G008450.3 , HORVU4Hr1G008450.2 , HORVU4Hr1G008450.5 , HORVU4Hr1G008450.7 , HORVU4Hr1G008450.6 , HORVU4Hr1G008450.9 , HORVU4Hr1G008450.8 , HORVU4Hr1G008450.11 , HORVU4Hr1G008450.10
Wheat TraesCS4A02G264000 , TraesCS4B02G050900 , TraesCS4D02G051000 , TraesCS4D02G051000
Populus -


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cDNA sequences
Sobic.001G112400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G262200 expressed protein -
2 Sobic.001G443200 transmembrane 9 superfamily member, putative, expressed K17087: transmembrane 9 superfamily member 3
3 Sobic.005G184200 WD domain, G-beta repeat domain containing protein, expressed K14003: PREB, prolactin regulatory element-binding protein
4 Sobic.001G378200 tetratricopeptide repeat domain containing protein, expressed -
5 Sobic.004G347600 vacuolar ATP synthase subunit H, putative, expressed K02144: V-type H+-transporting ATPase subunit H
6 Sobic.004G039400 Constitutively expressed genes(PubMedID : 24456189)@- K03257: translation initiation factor 4A
7 Sobic.004G344800 NADH dehydrogenase 1 alpha subcomplex subunit 9,mitochondrial precursor, putative, expressed K03953: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 9
8 Sobic.002G396700 NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial precursor, putative, expressed K03942: NADH dehydrogenase (ubiquinone) flavoprotein 1
9 Sobic.001G465400 dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial precursor, putative, expressed K00658: DLST, 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase)
10 Sobic.009G191400 NADH dehydrogenase flavoprotein 2, mitochondrial precursor, putative, expressed K03943: NADH dehydrogenase (ubiquinone) flavoprotein 2
11 Sobic.001G008100 expressed protein K17966: transmembrane protein 70, mitochondrial
12 Sobic.001G050700 ribosomal protein L4, putative, expressed K02926: RP-L4, MRPL4, large subunit ribosomal protein L4
13 Sobic.007G171500 cytochrome c1-1, heme protein, mitochondrial precursor, putative, expressed K00413: CYC1, CYT1, ubiquinol-cytochrome c reductase cytochrome c1 subunit
14 Sobic.008G102600 expressed protein -
15 Sobic.003G261800 expressed protein -
16 Sobic.001G332300 expressed protein -
17 Sobic.001G518500 adenylate kinase, putative, expressed K00939: adk, adenylate kinase
18 Sobic.006G029000 nicotiana lesion-inducing like, putative, expressed -
19 Sobic.001G387800 outer mitochondrial membrane porin, putative, expressed K11518: mitochondrial import receptor subunit TOM40
20 Sobic.007G206300 ribosomal protein S17, putative, expressed K02961: RP-S17, MRPS17, small subunit ribosomal protein S17


Gene co-expression network
sample Sobic001G112400 Sobic001G112400 Sobic002G262200 Sobic002G262200 Sobic001G112400--Sobic002G262200 Sobic001G443200 Sobic001G443200 Sobic001G112400--Sobic001G443200 Sobic005G184200 Sobic005G184200 Sobic001G112400--Sobic005G184200 Sobic001G378200 Sobic001G378200 Sobic001G112400--Sobic001G378200 Sobic004G347600 Sobic004G347600 Sobic001G112400--Sobic004G347600 Sobic004G039400 Sobic004G039400 Sobic001G112400--Sobic004G039400 Sobic004G344800 Sobic004G344800 Sobic001G112400--Sobic004G344800 Sobic002G396700 Sobic002G396700 Sobic001G112400--Sobic002G396700 Sobic001G465400 Sobic001G465400 Sobic001G112400--Sobic001G465400 Sobic004G159000 Sobic004G159000 Sobic002G262200--Sobic004G159000 Sobic009G224400 Sobic009G224400 Sobic002G262200--Sobic009G224400 Sobic002G395000 Sobic002G395000 Sobic002G262200--Sobic002G395000 Sobic003G135600 Sobic003G135600 Sobic002G262200--Sobic003G135600 Sobic002G262200--Sobic004G344800 Sobic001G073600 Sobic001G073600 Sobic002G262200--Sobic001G073600 Sobic002G262200--Sobic001G112400 Sobic007G013900 Sobic007G013900 Sobic002G262200--Sobic007G013900 Sobic009G191400 Sobic009G191400 Sobic002G262200--Sobic009G191400 Sobic008G102600 Sobic008G102600 Sobic001G443200--Sobic008G102600 Sobic004G000100 Sobic004G000100 Sobic001G443200--Sobic004G000100 Sobic001G443200--Sobic004G039400 Sobic001G443200--Sobic001G112400 Sobic001G443200--Sobic004G344800 Sobic002G141700 Sobic002G141700 Sobic001G443200--Sobic002G141700 Sobic010G040900 Sobic010G040900 Sobic001G443200--Sobic010G040900 Sobic001G443200--Sobic001G073600 Sobic001G443200--Sobic002G262200 Sobic005G184200--Sobic001G112400 Sobic003G116600 Sobic003G116600 Sobic005G184200--Sobic003G116600 Sobic005G184200--Sobic001G443200 Sobic003G217100 Sobic003G217100 Sobic005G184200--Sobic003G217100 Sobic001G332300 Sobic001G332300 Sobic005G184200--Sobic001G332300 Sobic005G184200--Sobic004G344800 Sobic002G090700 Sobic002G090700 Sobic005G184200--Sobic002G090700 Sobic005G184200--Sobic001G378200 Sobic008G110500 Sobic008G110500 Sobic005G184200--Sobic008G110500 Sobic001G378200--Sobic001G465400 Sobic001G378200--Sobic001G112400 Sobic006G012700 Sobic006G012700 Sobic001G378200--Sobic006G012700 Sobic004G078700 Sobic004G078700 Sobic001G378200--Sobic004G078700 Sobic001G378200--Sobic004G039400 Sobic001G378200--Sobic001G443200 Sobic001G008100 Sobic001G008100 Sobic001G378200--Sobic001G008100 Sobic001G378200--Sobic002G262200 Sobic005G207400 Sobic005G207400 Sobic001G378200--Sobic005G207400 Sobic004G347600--Sobic009G191400 Sobic004G347600--Sobic001G073600 Sobic003G034900 Sobic003G034900 Sobic004G347600--Sobic003G034900 Sobic001G458800 Sobic001G458800 Sobic004G347600--Sobic001G458800 Sobic004G347600--Sobic001G465400 Sobic004G347600--Sobic001G112400 Sobic001G115700 Sobic001G115700 Sobic004G347600--Sobic001G115700 Sobic007G161200 Sobic007G161200 Sobic004G347600--Sobic007G161200 Sobic004G347600--Sobic001G443200 Sobic004G039400--Sobic001G008100 Sobic004G039400--Sobic001G073600 Sobic004G039400--Sobic010G040900 Sobic004G039400--Sobic001G443200 Sobic004G039400--Sobic002G262200 Sobic004G039400--Sobic009G191400 Sobic004G039400--Sobic004G344800 Sobic001G387200 Sobic001G387200 Sobic004G039400--Sobic001G387200 Sobic002G079700 Sobic002G079700 Sobic004G039400--Sobic002G079700 Sobic004G344800--Sobic001G073600 Sobic004G344800--Sobic003G135600 Sobic004G344800--Sobic004G159000 Sobic001G035400 Sobic001G035400 Sobic004G344800--Sobic001G035400 Sobic004G344800--Sobic009G191400 Sobic004G030000 Sobic004G030000 Sobic004G344800--Sobic004G030000 Sobic004G344800--Sobic002G262200 Sobic004G344800--Sobic002G396700 Sobic001G031900 Sobic001G031900 Sobic004G344800--Sobic001G031900 Sobic002G396700--Sobic004G344800 Sobic002G396700--Sobic009G191400 Sobic007G171500 Sobic007G171500 Sobic002G396700--Sobic007G171500 Sobic002G396700--Sobic001G112400 Sobic002G396700--Sobic001G115700 Sobic009G089700 Sobic009G089700 Sobic002G396700--Sobic009G089700 Sobic002G396700--Sobic001G458800 Sobic002G396700--Sobic002G262200 Sobic002G396700--Sobic001G465400 Sobic001G465400--Sobic003G034900 Sobic001G465400--Sobic006G012700 Sobic001G465400--Sobic001G115700 Sobic001G465400--Sobic001G378200 Sobic001G465400--Sobic004G078700 Sobic001G465400--Sobic004G000100 Sobic001G047600 Sobic001G047600 Sobic001G465400--Sobic001G047600 Sobic001G465400--Sobic001G008100 Sobic001G465400--Sobic004G347600
Octagon: transcription factors


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