Gene annotation
Transcriptome id Sobic.007G206300.1
Synonym emb1129, Sb07g027370
Functional annotation ribosomal protein S17, putative, expressed
UniProt C5YIN3
Pfam PF00366
Panther DB PTHR10744
NCBI CDD KOG1740; Predicted mitochondrial/chloroplast ribosomal protein S17
KEGG Orthology K02961; RP-S17, MRPS17, small subunit ribosomal protein S17
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT1G49400 : Nucleic acid-binding, OB-fold-like protein
RAP-DB (Rice) LOC_Os08g27090.1 : ribosomal protein S17, putative, expressed
MaizeGDB (Corn) Zm00025a030677
Brachypodium KQK23170
Barley HORVU0Hr1G010170.3 , HORVU3Hr1G116080.2 , HORVU5Hr1G010620.2 , HORVU0Hr1G010170.6 , HORVU0Hr1G010170.5 , HORVU5Hr1G010620.1 , HORVU3Hr1G116080.1 , HORVU3Hr1G116080.3 , HORVU0Hr1G010170.4
Wheat TraesCS5B02G047300 , TraesCS3B02G602000 , TraesCS5D02G052400 , TraesCS5A02G043500 , TraesCS3A02G531600
Populus PNS94491 , PNS94493 , PNS94492


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G008100 expressed protein K17966: transmembrane protein 70, mitochondrial
2 Sobic.001G387800 outer mitochondrial membrane porin, putative, expressed K11518: mitochondrial import receptor subunit TOM40
3 Sobic.007G119600 clathrin adaptor complex small chain domain containing protein, expressed K12403: AP-4 complex subunit sigma-1
4 Sobic.001G112400 cytochrome c oxidase assembly protein COX11, mitochondrial precursor, putative, expressed K02258: COX11, cytochrome c oxidase assembly protein subunit 11
5 Sobic.004G039400 Constitutively expressed genes(PubMedID : 24456189)@- K03257: translation initiation factor 4A
6 Sobic.001G304000 enoyl-CoA hydratase/isomerase family protein, putative, expressed K05605: 3-hydroxyisobutyryl-CoA hydrolase
7 Sobic.001G178500 chloroplast 30S ribosomal protein S19, putative, expressed K02965: RP-S19, small subunit ribosomal protein S19
8 Sobic.006G041800 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed -
9 Sobic.009G224400 ATP synthase, putative, expressed K02133: ATPeF1B, ATP5B, F-type H+-transporting ATPase subunit beta
10 Sobic.009G191400 NADH dehydrogenase flavoprotein 2, mitochondrial precursor, putative, expressed K03943: NADH dehydrogenase (ubiquinone) flavoprotein 2
11 Sobic.003G388700 ribosomal protein L13, putative, expressed K02871: RP-L13, MRPL13, large subunit ribosomal protein L13
12 Sobic.003G261800 expressed protein -
13 Sobic.007G171500 cytochrome c1-1, heme protein, mitochondrial precursor, putative, expressed K00413: CYC1, CYT1, ubiquinol-cytochrome c reductase cytochrome c1 subunit
14 Sobic.001G060300 expressed protein -
15 Sobic.003G202100 Uncharacterized ACR, COG1565 containing protein, putative, expressed K18164: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 7
16 Sobic.004G297700 ras-related protein, putative, expressed K07874: Ras-related protein Rab-1A
17 Sobic.002G079700 ribosomal protein L22, putative, expressed K02890: RP-L22, MRPL22, large subunit ribosomal protein L22
18 Sobic.007G023400 succinate dehydrogenase iron-sulfur subunit 2,mitochondrial precursor, putative, expressed K00235: SDHB, succinate dehydrogenase (ubiquinone) iron-sulfur subunit
19 Sobic.004G347600 vacuolar ATP synthase subunit H, putative, expressed K02144: V-type H+-transporting ATPase subunit H
20 Sobic.003G135600 bacterial transferase hexapeptide domain containing protein, expressed -


Gene co-expression network
sample Sobic007G206300 Sobic007G206300 Sobic001G008100 Sobic001G008100 Sobic007G206300--Sobic001G008100 Sobic001G387800 Sobic001G387800 Sobic007G206300--Sobic001G387800 Sobic007G119600 Sobic007G119600 Sobic007G206300--Sobic007G119600 Sobic001G112400 Sobic001G112400 Sobic007G206300--Sobic001G112400 Sobic004G039400 Sobic004G039400 Sobic007G206300--Sobic004G039400 Sobic001G304000 Sobic001G304000 Sobic007G206300--Sobic001G304000 Sobic001G178500 Sobic001G178500 Sobic007G206300--Sobic001G178500 Sobic006G041800 Sobic006G041800 Sobic007G206300--Sobic006G041800 Sobic009G224400 Sobic009G224400 Sobic007G206300--Sobic009G224400 Sobic001G008100--Sobic004G039400 Sobic001G008100--Sobic006G041800 Sobic001G465400 Sobic001G465400 Sobic001G008100--Sobic001G465400 Sobic010G040900 Sobic010G040900 Sobic001G008100--Sobic010G040900 Sobic001G008100--Sobic001G387800 Sobic003G276100 Sobic003G276100 Sobic001G008100--Sobic003G276100 Sobic002G079700 Sobic002G079700 Sobic001G008100--Sobic002G079700 Sobic009G191400 Sobic009G191400 Sobic001G008100--Sobic009G191400 Sobic002G276800 Sobic002G276800 Sobic001G008100--Sobic002G276800 Sobic003G196200 Sobic003G196200 Sobic001G387800--Sobic003G196200 Sobic001G387800--Sobic001G178500 Sobic001G387800--Sobic001G008100 Sobic001G387800--Sobic004G039400 Sobic001G387800--Sobic007G119600 Sobic001G387800--Sobic009G191400 Sobic001G387800--Sobic002G079700 Sobic001G387800--Sobic007G206300 Sobic001G387800--Sobic001G465400 Sobic007G119600--Sobic009G224400 Sobic007G119600--Sobic009G191400 Sobic007G119600--Sobic006G041800 Sobic001G457000 Sobic001G457000 Sobic007G119600--Sobic001G457000 Sobic001G073600 Sobic001G073600 Sobic007G119600--Sobic001G073600 Sobic002G255400 Sobic002G255400 Sobic007G119600--Sobic002G255400 Sobic003G028200 Sobic003G028200 Sobic007G119600--Sobic003G028200 Sobic003G388700 Sobic003G388700 Sobic007G119600--Sobic003G388700 Sobic003G260600 Sobic003G260600 Sobic007G119600--Sobic003G260600 Sobic002G262200 Sobic002G262200 Sobic001G112400--Sobic002G262200 Sobic001G443200 Sobic001G443200 Sobic001G112400--Sobic001G443200 Sobic005G184200 Sobic005G184200 Sobic001G112400--Sobic005G184200 Sobic001G378200 Sobic001G378200 Sobic001G112400--Sobic001G378200 Sobic004G347600 Sobic004G347600 Sobic001G112400--Sobic004G347600 Sobic001G112400--Sobic004G039400 Sobic004G344800 Sobic004G344800 Sobic001G112400--Sobic004G344800 Sobic002G396700 Sobic002G396700 Sobic001G112400--Sobic002G396700 Sobic001G112400--Sobic001G465400 Sobic004G039400--Sobic001G008100 Sobic004G039400--Sobic001G073600 Sobic004G039400--Sobic010G040900 Sobic004G039400--Sobic001G443200 Sobic004G039400--Sobic002G262200 Sobic004G039400--Sobic009G191400 Sobic004G039400--Sobic004G344800 Sobic001G387200 Sobic001G387200 Sobic004G039400--Sobic001G387200 Sobic004G039400--Sobic002G079700 Sobic003G202100 Sobic003G202100 Sobic001G304000--Sobic003G202100 Sobic008G171400 Sobic008G171400 Sobic001G304000--Sobic008G171400 Sobic005G018800 Sobic005G018800 Sobic001G304000--Sobic005G018800 Sobic002G071100 Sobic002G071100 Sobic001G304000--Sobic002G071100 Sobic003G388900 Sobic003G388900 Sobic001G304000--Sobic003G388900 Sobic006G020900 Sobic006G020900 Sobic001G304000--Sobic006G020900 Sobic001G304000--Sobic001G178500 Sobic001G304000--Sobic007G206300 Sobic008G168200 Sobic008G168200 Sobic001G304000--Sobic008G168200 Sobic001G178500--Sobic002G079700 Sobic001G178500--Sobic001G387800 Sobic001G060300 Sobic001G060300 Sobic001G178500--Sobic001G060300 Sobic001G178500--Sobic010G040900 Sobic001G178500--Sobic007G119600 Sobic003G135600 Sobic003G135600 Sobic001G178500--Sobic003G135600 Sobic001G178500--Sobic009G191400 Sobic007G171500 Sobic007G171500 Sobic001G178500--Sobic007G171500 Sobic001G178500--Sobic001G443200 Sobic006G041800--Sobic007G119600 Sobic006G041800--Sobic001G008100 Sobic006G041800--Sobic003G276100 Sobic001G485300 Sobic001G485300 Sobic006G041800--Sobic001G485300 Sobic006G041800--Sobic002G276800 Sobic007G012900 Sobic007G012900 Sobic006G041800--Sobic007G012900 Sobic006G041800--Sobic003G388700 Sobic006G041800--Sobic001G387800 Sobic006G041800--Sobic002G255400 Sobic009G224400--Sobic001G073600 Sobic009G224400--Sobic009G191400 Sobic002G395000 Sobic002G395000 Sobic009G224400--Sobic002G395000 Sobic009G224400--Sobic007G119600 Sobic009G224400--Sobic003G135600 Sobic001G458800 Sobic001G458800 Sobic009G224400--Sobic001G458800 Sobic004G155100 Sobic004G155100 Sobic009G224400--Sobic004G155100 Sobic003G034900 Sobic003G034900 Sobic009G224400--Sobic003G034900 Sobic009G224400--Sobic002G262200
Octagon: transcription factors


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