Gene annotation
Transcriptome id Sobic.007G023400.4,Sobic.007G023400.3
Synonym Sb07g002070, SDH2-2
Functional annotation succinate dehydrogenase iron-sulfur subunit 2,mitochondrial precursor, putative, expressed
UniProt A0A1Z5R8P3 , A0A1Z5R7Q4 , A1E9S2
Pfam PF13534 PF13085 PF00253 PF13085
Panther DB PTHR11921 PTHR11921:SF23 PTHR11921 PTHR11921:SF29
NCBI CDD KOG3049; Succinate dehydrogenase, Fe-S protein subunit KOG1741Mitochondrial/chloroplast ribosomal protein S14/S29
KEGG Orthology K00235; SDHB, succinate dehydrogenase (ubiquinone) iron-sulfur subunit
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome GO:0009055electron transfer activity GO:0009055electron transfer activity


Orthologs (automatic annotation)
TAIR AT5G40650 : succinate dehydrogenase 2-2
RAP-DB (Rice) LOC_Os08g02640.1,LOC_Os08g02640.3 : succinate dehydrogenase iron-sulfur subunit 2,mitochondrial precursor, putative, expressed
MaizeGDB (Corn) Zm00025a040319 , Zm00025a038492 , Zm00025a030218
Brachypodium KQJ94906 , KQJ94905
Barley HORVU7Hr1G074890.6 , HORVU7Hr1G074890.4
Wheat TraesCS7D02G311200 , TraesCS7D02G311200 , TraesCS7A02G314000 , TraesCS7A02G314000 , TraesCS7B02G214900 , TraesCS7B02G214900
Populus -


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cDNA sequences
Sobic.007G023400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G395000 bacterial transferase hexapeptide domain containing protein, expressed -
2 Sobic.010G032600 cytochrome c oxidase subunit 5B, mitochondrial precursor, putative, expressed K02265: cytochrome c oxidase subunit 5b
3 Sobic.009G224400 ATP synthase, putative, expressed K02133: ATPeF1B, ATP5B, F-type H+-transporting ATPase subunit beta
4 Sobic.007G171500 cytochrome c1-1, heme protein, mitochondrial precursor, putative, expressed K00413: CYC1, CYT1, ubiquinol-cytochrome c reductase cytochrome c1 subunit
5 Sobic.004G297700 ras-related protein, putative, expressed K07874: Ras-related protein Rab-1A
6 Sobic.003G135600 bacterial transferase hexapeptide domain containing protein, expressed -
7 Sobic.004G202100 dehydrogenase, putative, expressed K00030: isocitrate dehydrogenase (NAD+)
8 Sobic.002G217500 WD domain, G-beta repeat domain containing protein, expressed K14004: protein transport protein SEC13
9 Sobic.001G073600 4Fe-4S binding domain containing protein, expressed K03941: NADH dehydrogenase (ubiquinone) Fe-S protein 8
10 Sobic.002G352200 succinyl-CoA ligase subunit alpha-2, mitochondrial precursor, putative, expressed K01899: succinyl-CoA synthetase alpha subunit
11 Sobic.001G457000 ATP synthase gamma chain, putative, expressed K02136: ATPeF1G, ATP5C1, F-type H+-transporting ATPase subunit gamma
12 Sobic.004G260200 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed -
13 Sobic.004G344800 NADH dehydrogenase 1 alpha subcomplex subunit 9,mitochondrial precursor, putative, expressed K03953: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 9
14 Sobic.002G262200 expressed protein -
15 Sobic.009G191400 NADH dehydrogenase flavoprotein 2, mitochondrial precursor, putative, expressed K03943: NADH dehydrogenase (ubiquinone) flavoprotein 2
16 Sobic.007G013900 rickettsia 17 kDa surface antigen family protein, expressed -
17 Sobic.004G039400 Constitutively expressed genes(PubMedID : 24456189)@- K03257: translation initiation factor 4A
18 Sobic.007G119600 clathrin adaptor complex small chain domain containing protein, expressed K12403: AP-4 complex subunit sigma-1
19 Sobic.001G458800 mitochondrial-processing peptidase subunit, mitochondrial precursor, putative, expressed K17732: PMPCB, mitochondrial-processing peptidase subunit beta
20 Sobic.006G058900 cytochrome b-c1 complex subunit Rieske, mitochondrial precursor, putative, expressed K00411: UQCRFS1, RIP1, ubiquinol-cytochrome c reductase iron-sulfur subunit


Gene co-expression network
sample Sobic007G023400 Sobic007G023400 Sobic002G395000 Sobic002G395000 Sobic007G023400--Sobic002G395000 Sobic010G032600 Sobic010G032600 Sobic007G023400--Sobic010G032600 Sobic009G224400 Sobic009G224400 Sobic007G023400--Sobic009G224400 Sobic007G171500 Sobic007G171500 Sobic007G023400--Sobic007G171500 Sobic004G297700 Sobic004G297700 Sobic007G023400--Sobic004G297700 Sobic003G135600 Sobic003G135600 Sobic007G023400--Sobic003G135600 Sobic004G202100 Sobic004G202100 Sobic007G023400--Sobic004G202100 Sobic002G217500 Sobic002G217500 Sobic007G023400--Sobic002G217500 Sobic001G073600 Sobic001G073600 Sobic007G023400--Sobic001G073600 Sobic004G260200 Sobic004G260200 Sobic002G395000--Sobic004G260200 Sobic002G395000--Sobic003G135600 Sobic002G395000--Sobic009G224400 Sobic003G238500 Sobic003G238500 Sobic002G395000--Sobic003G238500 Sobic002G309700 Sobic002G309700 Sobic002G395000--Sobic002G309700 Sobic002G395000--Sobic001G073600 Sobic004G155100 Sobic004G155100 Sobic002G395000--Sobic004G155100 Sobic002G395000--Sobic007G023400 Sobic002G078300 Sobic002G078300 Sobic002G395000--Sobic002G078300 Sobic010G032600--Sobic007G023400 Sobic010G032600--Sobic002G395000 Sobic010G032600--Sobic007G171500 Sobic010G032600--Sobic004G297700 Sobic001G457000 Sobic001G457000 Sobic010G032600--Sobic001G457000 Sobic002G262200 Sobic002G262200 Sobic010G032600--Sobic002G262200 Sobic010G032600--Sobic001G073600 Sobic009G191400 Sobic009G191400 Sobic010G032600--Sobic009G191400 Sobic010G032600--Sobic009G224400 Sobic009G224400--Sobic001G073600 Sobic009G224400--Sobic009G191400 Sobic009G224400--Sobic002G395000 Sobic007G119600 Sobic007G119600 Sobic009G224400--Sobic007G119600 Sobic009G224400--Sobic003G135600 Sobic001G458800 Sobic001G458800 Sobic009G224400--Sobic001G458800 Sobic009G224400--Sobic004G155100 Sobic003G034900 Sobic003G034900 Sobic009G224400--Sobic003G034900 Sobic009G224400--Sobic002G262200 Sobic007G171500--Sobic004G297700 Sobic007G171500--Sobic003G034900 Sobic007G171500--Sobic001G458800 Sobic007G171500--Sobic009G224400 Sobic007G171500--Sobic010G032600 Sobic007G171500--Sobic002G395000 Sobic006G058900 Sobic006G058900 Sobic007G171500--Sobic006G058900 Sobic007G171500--Sobic009G191400 Sobic007G171500--Sobic001G457000 Sobic004G297700--Sobic007G171500 Sobic004G297700--Sobic010G032600 Sobic006G276700 Sobic006G276700 Sobic004G297700--Sobic006G276700 Sobic002G186300 Sobic002G186300 Sobic004G297700--Sobic002G186300 Sobic004G244000 Sobic004G244000 Sobic004G297700--Sobic004G244000 Sobic004G297700--Sobic007G023400 Sobic004G297700--Sobic001G457000 Sobic004G297700--Sobic004G202100 Sobic004G297700--Sobic003G034900 Sobic003G135600--Sobic004G155100 Sobic003G135600--Sobic002G395000 Sobic003G135600--Sobic001G073600 Sobic003G135600--Sobic009G224400 Sobic003G135600--Sobic002G309700 Sobic003G135600--Sobic009G191400 Sobic001G181500 Sobic001G181500 Sobic003G135600--Sobic001G181500 Sobic009G211900 Sobic009G211900 Sobic003G135600--Sobic009G211900 Sobic003G135600--Sobic004G260200 Sobic001G031900 Sobic001G031900 Sobic004G202100--Sobic001G031900 Sobic004G202100--Sobic002G395000 Sobic004G262300 Sobic004G262300 Sobic004G202100--Sobic004G262300 Sobic004G202100--Sobic006G058900 Sobic001G282500 Sobic001G282500 Sobic004G202100--Sobic001G282500 Sobic006G231500 Sobic006G231500 Sobic004G202100--Sobic006G231500 Sobic002G309500 Sobic002G309500 Sobic004G202100--Sobic002G309500 Sobic004G202100--Sobic004G297700 Sobic004G202100--Sobic007G023400 Sobic003G016300 Sobic003G016300 Sobic002G217500--Sobic003G016300 Sobic002G352200 Sobic002G352200 Sobic002G217500--Sobic002G352200 Sobic002G255400 Sobic002G255400 Sobic002G217500--Sobic002G255400 Sobic006G153200 Sobic006G153200 Sobic002G217500--Sobic006G153200 Sobic001G219800 Sobic001G219800 Sobic002G217500--Sobic001G219800 Sobic008G018300 Sobic008G018300 Sobic002G217500--Sobic008G018300 Sobic003G260600 Sobic003G260600 Sobic002G217500--Sobic003G260600 Sobic002G217500--Sobic007G023400 Sobic009G218000 Sobic009G218000 Sobic002G217500--Sobic009G218000 Sobic001G073600--Sobic009G191400 Sobic001G073600--Sobic009G224400 Sobic001G073600--Sobic003G135600 Sobic001G073600--Sobic002G395000 Sobic004G344800 Sobic004G344800 Sobic001G073600--Sobic004G344800 Sobic001G073600--Sobic007G119600 Sobic004G347600 Sobic004G347600 Sobic001G073600--Sobic004G347600 Sobic001G073600--Sobic001G458800 Sobic001G073600--Sobic004G155100
Octagon: transcription factors


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