Gene annotation
Transcriptome id Sobic.001G031900.2
Synonym ATRAB-A2B, RABA2b, RAB-A2B, Sb01g002980, ATRABA2B
Functional annotation ras-related protein, putative, expressed
UniProt A0A1B6QH60
Pfam PF00025
Panther DB PTHR24073 PTHR24073:SF484
NCBI CDD KOG0087; GTPase Rab11/YPT3, small G protein superfamily
KEGG Orthology K07904; Ras-related protein Rab-11A
Gene Ontology GO:0005525; GTP binding


Orthologs (automatic annotation)
TAIR AT1G07410 : RAB GTPase homolog A2B
RAP-DB (Rice) LOC_Os03g60870.1 : ras-related protein, putative, expressed
MaizeGDB (Corn) Zm00025a036613 , Zm00025a044235 , Zm00025a037063 , Zm00025a038289 , Zm00025a008844 , Zm00025a042339 , Zm00025a008978 , Zm00025a016417 , Zm00025a028122 , Zm00025a044575 , Zm00025a039651 , Zm00025a043281 , Zm00025a051086
Brachypodium KQK10571 , KQK12398 , KQK12397 , KQK09101 , KQJ98137 , KQK08122 , KQK18040 , KQK12193 , PNT73882 , KQK06841 , KQJ98073 , KQK09739 , KQK10572
Barley HORVU7Hr1G089120.1 , HORVU7Hr1G089120.2 , HORVU5Hr1G120210.2 , HORVU5Hr1G120210.1 , HORVU5Hr1G120210.4 , HORVU1Hr1G033390.1 , HORVU1Hr1G033390.3 , HORVU1Hr1G033390.2 , HORVU1Hr1G033390.5 , HORVU1Hr1G033390.4 , HORVU1Hr1G033390.6 , HORVU1Hr1G001920.3 , HORVU1Hr1G001920.2 , HORVU5Hr1G056470.1 , HORVU3Hr1G071740.6 , HORVU3Hr1G071740.4 , HORVU3Hr1G071740.5 , HORVU3Hr1G071740.2 , HORVU3Hr1G071740.3 , HORVU3Hr1G071740.1 , HORVU3Hr1G061000.1 , HORVU3Hr1G061000.2 , HORVU3Hr1G061000.3 , HORVU3Hr1G061000.4 , HORVU3Hr1G061000.5 , HORVU3Hr1G061000.6 , HORVU3Hr1G061000.7 , HORVU3Hr1G061000.8 , HORVU5Hr1G114250.1 , HORVU5Hr1G114250.2 , HORVU3Hr1G085710.4 , HORVU3Hr1G085710.2 , HORVU3Hr1G085710.3 , HORVU3Hr1G085710.1
Wheat TraesCS7B02G273300 , TraesCS5D02G498600 , TraesCS1A02G015400 , TraesCS3B02G272300 , TraesCS3B02G396200 , TraesCS5A02G184100 , TraesCS3A02G289600 , TraesCS1D02G405900 , TraesCS5D02G188900 , TraesCS7D02G368300 , TraesCS3D02G357500 , TraesCS3B02G324300 , TraesCS5B02G182200 , TraesCS4A02G343500 , TraesCS5D02G529500 , TraesCS1D02G013300 , TraesCS1A02G398400 , TraesCS1B02G426300 , TraesCS1B02G018900 , TraesCS3D02G289400 , TraesCS7A02G354400 , TraesCS3A02G364100 , TraesCS3A02G247000 , TraesCS5B02G530800 , TraesCS5B02G498600 , TraesCS5A02G485100 , TraesCS3D02G244500
Populus -


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cDNA sequences
Sobic.001G031900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G058900 cytochrome b-c1 complex subunit Rieske, mitochondrial precursor, putative, expressed K00411: UQCRFS1, RIP1, ubiquinol-cytochrome c reductase iron-sulfur subunit
2 Sobic.004G202100 dehydrogenase, putative, expressed K00030: isocitrate dehydrogenase (NAD+)
3 Sobic.002G395000 bacterial transferase hexapeptide domain containing protein, expressed -
4 Sobic.001G350600 cytochrome c oxidase subunit, putative, expressed K02267: cytochrome c oxidase subunit 6b
5 Sobic.004G344800 NADH dehydrogenase 1 alpha subcomplex subunit 9,mitochondrial precursor, putative, expressed K03953: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 9
6 Sobic.003G152900 -(PubMedID : 26976818)@dihydrolipoyl dehydrogenase 1, mitochondrial precursor, putative, expressed K00382: DLD, lpd, dihydrolipoamide dehydrogenase
7 Sobic.004G170400 ubiquinol-cytochrome C reductase hinge protein, putative, expressed K00416: QCR6, ubiquinol-cytochrome c reductase subunit 6
8 Sobic.001G458800 mitochondrial-processing peptidase subunit, mitochondrial precursor, putative, expressed K17732: PMPCB, mitochondrial-processing peptidase subunit beta
9 Sobic.004G030000 mitochondrial ATP synthase precursor, putative, expressed -
10 Sobic.001G074700 cytochrome c oxidase-related, putative, expressed K02266: cytochrome c oxidase subunit 6a
11 Sobic.003G185500 expressed protein -
12 Sobic.001G342200 40S ribosomal protein S15a, putative, expressed K02957: RP-S15Ae, small subunit ribosomal protein S15Ae
13 Sobic.010G007400 peptidase, T1 family, putative, expressed K02739: 20S proteasome subunit beta 2
14 Sobic.007G013900 rickettsia 17 kDa surface antigen family protein, expressed -
15 Sobic.002G309700 ATP synthase delta chain, mitochondrial precursor, putative, expressed K02134: ATPeF1D, ATP5D, F-type H+-transporting ATPase subunit delta
16 Sobic.006G126000 26S proteasome non-ATPase regulatory subunit 6, putative, expressed K03037: PSMD6, 26S proteasome regulatory subunit N7
17 Sobic.007G092100 ADP-ribosylation factor, putative, expressed K07942: ADP-ribosylation factor-like protein 1
18 Sobic.010G008800 defender against cell death 1, putative, expressed K12668: OST2, oligosaccharyltransferase complex subunit epsilon
19 Sobic.002G356400 NADH dehydrogenase iron-sulfur protein 4, mitochondrial precursor, putative, expressed K03937: NADH dehydrogenase (ubiquinone) Fe-S protein 4
20 Sobic.004G262300 thioredoxin reductase 2, putative, expressed K00384: trxB, thioredoxin reductase (NADPH)


Gene co-expression network
sample Sobic001G031900 Sobic001G031900 Sobic006G058900 Sobic006G058900 Sobic001G031900--Sobic006G058900 Sobic004G202100 Sobic004G202100 Sobic001G031900--Sobic004G202100 Sobic002G395000 Sobic002G395000 Sobic001G031900--Sobic002G395000 Sobic001G350600 Sobic001G350600 Sobic001G031900--Sobic001G350600 Sobic004G344800 Sobic004G344800 Sobic001G031900--Sobic004G344800 Sobic003G152900 Sobic003G152900 Sobic001G031900--Sobic003G152900 Sobic004G170400 Sobic004G170400 Sobic001G031900--Sobic004G170400 Sobic001G458800 Sobic001G458800 Sobic001G031900--Sobic001G458800 Sobic004G030000 Sobic004G030000 Sobic001G031900--Sobic004G030000 Sobic006G058900--Sobic001G031900 Sobic006G058900--Sobic001G458800 Sobic006G058900--Sobic004G202100 Sobic006G058900--Sobic002G395000 Sobic007G171500 Sobic007G171500 Sobic006G058900--Sobic007G171500 Sobic002G309500 Sobic002G309500 Sobic006G058900--Sobic002G309500 Sobic006G058900--Sobic004G344800 Sobic003G034900 Sobic003G034900 Sobic006G058900--Sobic003G034900 Sobic003G185500 Sobic003G185500 Sobic006G058900--Sobic003G185500 Sobic004G202100--Sobic001G031900 Sobic004G202100--Sobic002G395000 Sobic004G262300 Sobic004G262300 Sobic004G202100--Sobic004G262300 Sobic004G202100--Sobic006G058900 Sobic001G282500 Sobic001G282500 Sobic004G202100--Sobic001G282500 Sobic006G231500 Sobic006G231500 Sobic004G202100--Sobic006G231500 Sobic004G202100--Sobic002G309500 Sobic004G297700 Sobic004G297700 Sobic004G202100--Sobic004G297700 Sobic007G023400 Sobic007G023400 Sobic004G202100--Sobic007G023400 Sobic004G260200 Sobic004G260200 Sobic002G395000--Sobic004G260200 Sobic003G135600 Sobic003G135600 Sobic002G395000--Sobic003G135600 Sobic009G224400 Sobic009G224400 Sobic002G395000--Sobic009G224400 Sobic003G238500 Sobic003G238500 Sobic002G395000--Sobic003G238500 Sobic002G309700 Sobic002G309700 Sobic002G395000--Sobic002G309700 Sobic001G073600 Sobic001G073600 Sobic002G395000--Sobic001G073600 Sobic004G155100 Sobic004G155100 Sobic002G395000--Sobic004G155100 Sobic002G395000--Sobic007G023400 Sobic002G078300 Sobic002G078300 Sobic002G395000--Sobic002G078300 Sobic001G350600--Sobic004G170400 Sobic004G259200 Sobic004G259200 Sobic001G350600--Sobic004G259200 Sobic002G356400 Sobic002G356400 Sobic001G350600--Sobic002G356400 Sobic001G074700 Sobic001G074700 Sobic001G350600--Sobic001G074700 Sobic001G465800 Sobic001G465800 Sobic001G350600--Sobic001G465800 Sobic003G209000 Sobic003G209000 Sobic001G350600--Sobic003G209000 Sobic001G404800 Sobic001G404800 Sobic001G350600--Sobic001G404800 Sobic009G119900 Sobic009G119900 Sobic001G350600--Sobic009G119900 Sobic001G350600--Sobic004G030000 Sobic004G344800--Sobic001G073600 Sobic004G344800--Sobic003G135600 Sobic004G159000 Sobic004G159000 Sobic004G344800--Sobic004G159000 Sobic001G035400 Sobic001G035400 Sobic004G344800--Sobic001G035400 Sobic009G191400 Sobic009G191400 Sobic004G344800--Sobic009G191400 Sobic004G344800--Sobic004G030000 Sobic002G262200 Sobic002G262200 Sobic004G344800--Sobic002G262200 Sobic002G396700 Sobic002G396700 Sobic004G344800--Sobic002G396700 Sobic004G344800--Sobic001G031900 Sobic003G152900--Sobic004G030000 Sobic003G152900--Sobic001G074700 Sobic003G152900--Sobic004G170400 Sobic003G152900--Sobic001G350600 Sobic010G154700 Sobic010G154700 Sobic003G152900--Sobic010G154700 Sobic003G152900--Sobic001G031900 Sobic002G090700 Sobic002G090700 Sobic003G152900--Sobic002G090700 Sobic003G152900--Sobic004G159000 Sobic004G066800 Sobic004G066800 Sobic003G152900--Sobic004G066800 Sobic004G170400--Sobic001G350600 Sobic004G170400--Sobic004G259200 Sobic004G170400--Sobic001G074700 Sobic004G170400--Sobic001G465800 Sobic004G170400--Sobic009G119900 Sobic004G170400--Sobic002G356400 Sobic004G170400--Sobic003G209000 Sobic004G310300 Sobic004G310300 Sobic004G170400--Sobic004G310300 Sobic002G418400 Sobic002G418400 Sobic004G170400--Sobic002G418400 Sobic001G458800--Sobic003G034900 Sobic001G458800--Sobic009G224400 Sobic001G458800--Sobic006G058900 Sobic001G115700 Sobic001G115700 Sobic001G458800--Sobic001G115700 Sobic001G458800--Sobic007G171500 Sobic001G458800--Sobic001G073600 Sobic002G186300 Sobic002G186300 Sobic001G458800--Sobic002G186300 Sobic001G458800--Sobic002G395000 Sobic001G458800--Sobic001G031900 Sobic004G030000--Sobic003G152900 Sobic004G030000--Sobic001G350600 Sobic004G030000--Sobic001G465800 Sobic004G030000--Sobic002G309700 Sobic004G030000--Sobic001G074700 Sobic004G030000--Sobic004G170400 Sobic010G007400 Sobic010G007400 Sobic004G030000--Sobic010G007400 Sobic004G030000--Sobic004G344800 Sobic004G030000--Sobic004G159000
Octagon: transcription factors


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