Gene annotation
Transcriptome id Sobic.006G126000.1
Synonym Sb06g020620
Functional annotation 26S proteasome non-ATPase regulatory subunit 6, putative, expressed
UniProt A0A1B6PLN8
Pfam PF01399 PF10602
Panther DB PTHR14145 PTHR14145:SF1
NCBI CDD -
KEGG Orthology K03037; PSMD6, 26S proteasome regulatory subunit N7
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT4G24820 : 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain
RAP-DB (Rice) LOC_Os04g40850.1 : 26S proteasome non-ATPase regulatory subunit 6, putative, expressed
MaizeGDB (Corn) Zm00025a010959 , Zm00025a021287
Brachypodium KQJ83227 , KQK00191
Barley HORVU2Hr1G083860.1 , HORVU0Hr1G004970.2 , HORVU0Hr1G004970.1 , HORVU6Hr1G054100.1 , HORVU6Hr1G054100.2 , HORVU6Hr1G054100.3
Wheat TraesCS6B02G242700 , TraesCS2B02G361900 , TraesCS2D02G341500 , TraesCS2A02G320800 , TraesCS6D02G195300 , TraesCS6A02G212300
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.006G126000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G031900 ras-related protein, putative, expressed K07904: Ras-related protein Rab-11A
2 Sobic.010G040900 trafficking protein particle complex subunit 4, putative, expressed -
3 Sobic.003G330500 peptidase, T1 family, putative, expressed -
4 Sobic.007G176200 26S proteasome non-ATPase regulatory subunit 3, putative, expressed K03033: PSMD3, 26S proteasome regulatory subunit N3
5 Sobic.003G135600 bacterial transferase hexapeptide domain containing protein, expressed -
6 Sobic.010G008800 defender against cell death 1, putative, expressed K12668: OST2, oligosaccharyltransferase complex subunit epsilon
7 Sobic.001G350600 cytochrome c oxidase subunit, putative, expressed K02267: cytochrome c oxidase subunit 6b
8 Sobic.003G152900 -(PubMedID : 26976818)@dihydrolipoyl dehydrogenase 1, mitochondrial precursor, putative, expressed K00382: DLD, lpd, dihydrolipoamide dehydrogenase
9 Sobic.004G030000 mitochondrial ATP synthase precursor, putative, expressed -
10 Sobic.004G226500 dehydrogenase, putative, expressed K00001: E1.1.1.1, alcohol dehydrogenase
11 Sobic.001G074700 cytochrome c oxidase-related, putative, expressed K02266: cytochrome c oxidase subunit 6a
12 Sobic.002G356400 NADH dehydrogenase iron-sulfur protein 4, mitochondrial precursor, putative, expressed K03937: NADH dehydrogenase (ubiquinone) Fe-S protein 4
13 Sobic.001G178500 chloroplast 30S ribosomal protein S19, putative, expressed K02965: RP-S19, small subunit ribosomal protein S19
14 Sobic.001G443200 transmembrane 9 superfamily member, putative, expressed K17087: transmembrane 9 superfamily member 3
15 Sobic.006G203900 vacuolar ATPase G subunit, putative, expressed K02152: ATPeV1G, V-type H+-transporting ATPase subunit G
16 Sobic.004G344800 NADH dehydrogenase 1 alpha subcomplex subunit 9,mitochondrial precursor, putative, expressed K03953: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 9
17 Sobic.001G465800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@outer mitochondrial membrane porin, putative, expressed K15040: voltage-dependent anion channel protein 2
18 Sobic.003G185500 expressed protein -
19 Sobic.008G102600 expressed protein -
20 Sobic.009G104100 peptidase, M24 family protein, putative, expressed -


Gene co-expression network
sample Sobic006G126000 Sobic006G126000 Sobic001G031900 Sobic001G031900 Sobic006G126000--Sobic001G031900 Sobic010G040900 Sobic010G040900 Sobic006G126000--Sobic010G040900 Sobic003G330500 Sobic003G330500 Sobic006G126000--Sobic003G330500 Sobic007G176200 Sobic007G176200 Sobic006G126000--Sobic007G176200 Sobic003G135600 Sobic003G135600 Sobic006G126000--Sobic003G135600 Sobic010G008800 Sobic010G008800 Sobic006G126000--Sobic010G008800 Sobic001G350600 Sobic001G350600 Sobic006G126000--Sobic001G350600 Sobic003G152900 Sobic003G152900 Sobic006G126000--Sobic003G152900 Sobic004G030000 Sobic004G030000 Sobic006G126000--Sobic004G030000 Sobic006G058900 Sobic006G058900 Sobic001G031900--Sobic006G058900 Sobic004G202100 Sobic004G202100 Sobic001G031900--Sobic004G202100 Sobic002G395000 Sobic002G395000 Sobic001G031900--Sobic002G395000 Sobic001G031900--Sobic001G350600 Sobic004G344800 Sobic004G344800 Sobic001G031900--Sobic004G344800 Sobic001G031900--Sobic003G152900 Sobic004G170400 Sobic004G170400 Sobic001G031900--Sobic004G170400 Sobic001G458800 Sobic001G458800 Sobic001G031900--Sobic001G458800 Sobic001G031900--Sobic004G030000 Sobic004G039400 Sobic004G039400 Sobic010G040900--Sobic004G039400 Sobic001G443200 Sobic001G443200 Sobic010G040900--Sobic001G443200 Sobic009G191400 Sobic009G191400 Sobic010G040900--Sobic009G191400 Sobic001G008100 Sobic001G008100 Sobic010G040900--Sobic001G008100 Sobic001G178500 Sobic001G178500 Sobic010G040900--Sobic001G178500 Sobic010G040900--Sobic006G126000 Sobic003G261800 Sobic003G261800 Sobic010G040900--Sobic003G261800 Sobic010G040900--Sobic003G135600 Sobic010G040900--Sobic004G344800 Sobic004G224900 Sobic004G224900 Sobic003G330500--Sobic004G224900 Sobic003G330500--Sobic007G176200 Sobic007G076300 Sobic007G076300 Sobic003G330500--Sobic007G076300 Sobic006G252200 Sobic006G252200 Sobic003G330500--Sobic006G252200 Sobic001G458700 Sobic001G458700 Sobic003G330500--Sobic001G458700 Sobic001G010700 Sobic001G010700 Sobic003G330500--Sobic001G010700 Sobic001G502200 Sobic001G502200 Sobic003G330500--Sobic001G502200 Sobic004G138800 Sobic004G138800 Sobic003G330500--Sobic004G138800 Sobic001G096100 Sobic001G096100 Sobic003G330500--Sobic001G096100 Sobic007G176200--Sobic001G458700 Sobic007G176200--Sobic001G010700 Sobic007G176200--Sobic006G252200 Sobic007G176200--Sobic003G330500 Sobic007G176200--Sobic004G224900 Sobic002G428200 Sobic002G428200 Sobic007G176200--Sobic002G428200 Sobic004G335000 Sobic004G335000 Sobic007G176200--Sobic004G335000 Sobic002G341800 Sobic002G341800 Sobic007G176200--Sobic002G341800 Sobic009G067000 Sobic009G067000 Sobic007G176200--Sobic009G067000 Sobic004G155100 Sobic004G155100 Sobic003G135600--Sobic004G155100 Sobic003G135600--Sobic002G395000 Sobic001G073600 Sobic001G073600 Sobic003G135600--Sobic001G073600 Sobic009G224400 Sobic009G224400 Sobic003G135600--Sobic009G224400 Sobic002G309700 Sobic002G309700 Sobic003G135600--Sobic002G309700 Sobic003G135600--Sobic009G191400 Sobic001G181500 Sobic001G181500 Sobic003G135600--Sobic001G181500 Sobic009G211900 Sobic009G211900 Sobic003G135600--Sobic009G211900 Sobic004G260200 Sobic004G260200 Sobic003G135600--Sobic004G260200 Sobic001G074700 Sobic001G074700 Sobic010G008800--Sobic001G074700 Sobic001G342200 Sobic001G342200 Sobic010G008800--Sobic001G342200 Sobic010G008800--Sobic001G350600 Sobic006G013000 Sobic006G013000 Sobic010G008800--Sobic006G013000 Sobic004G066800 Sobic004G066800 Sobic010G008800--Sobic004G066800 Sobic004G310300 Sobic004G310300 Sobic010G008800--Sobic004G310300 Sobic009G115700 Sobic009G115700 Sobic010G008800--Sobic009G115700 Sobic003G129800 Sobic003G129800 Sobic010G008800--Sobic003G129800 Sobic001G505500 Sobic001G505500 Sobic010G008800--Sobic001G505500 Sobic001G350600--Sobic004G170400 Sobic004G259200 Sobic004G259200 Sobic001G350600--Sobic004G259200 Sobic002G356400 Sobic002G356400 Sobic001G350600--Sobic002G356400 Sobic001G350600--Sobic001G074700 Sobic001G465800 Sobic001G465800 Sobic001G350600--Sobic001G465800 Sobic003G209000 Sobic003G209000 Sobic001G350600--Sobic003G209000 Sobic001G404800 Sobic001G404800 Sobic001G350600--Sobic001G404800 Sobic009G119900 Sobic009G119900 Sobic001G350600--Sobic009G119900 Sobic001G350600--Sobic004G030000 Sobic003G152900--Sobic004G030000 Sobic003G152900--Sobic001G074700 Sobic003G152900--Sobic004G170400 Sobic003G152900--Sobic001G350600 Sobic010G154700 Sobic010G154700 Sobic003G152900--Sobic010G154700 Sobic003G152900--Sobic001G031900 Sobic002G090700 Sobic002G090700 Sobic003G152900--Sobic002G090700 Sobic004G159000 Sobic004G159000 Sobic003G152900--Sobic004G159000 Sobic003G152900--Sobic004G066800 Sobic004G030000--Sobic003G152900 Sobic004G030000--Sobic001G350600 Sobic004G030000--Sobic001G465800 Sobic004G030000--Sobic002G309700 Sobic004G030000--Sobic001G074700 Sobic004G030000--Sobic004G170400 Sobic010G007400 Sobic010G007400 Sobic004G030000--Sobic010G007400 Sobic004G030000--Sobic004G344800 Sobic004G030000--Sobic004G159000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.