Gene annotation
Transcriptome id Sobic.004G226500.1
Synonym Sb04g027090
Functional annotation dehydrogenase, putative, expressed
UniProt C5XY85
Pfam PF00107 PF08240
Panther DB PTHR11695 PTHR11695:SF449
NCBI CDD -
KEGG Orthology K00001; E1.1.1.1, alcohol dehydrogenase
Gene Ontology GO:0016491; oxidoreductase activity GO:0008270zinc ion binding


Orthologs (automatic annotation)
TAIR AT5G24760 : GroES-like zinc-binding dehydrogenase family protein
RAP-DB (Rice) LOC_Os02g42520.2 : dehydrogenase, putative, expressed
MaizeGDB (Corn) Zm00025a032095
Brachypodium KQK00485
Barley HORVU6Hr1G060010.15 , HORVU6Hr1G060010.17 , HORVU6Hr1G060010.16 , HORVU6Hr1G060010.19 , HORVU6Hr1G060010.18 , HORVU6Hr1G060010.14 , HORVU6Hr1G060010.20 , HORVU6Hr1G060010.21 , HORVU6Hr1G060010.22 , HORVU6Hr1G060010.23 , HORVU6Hr1G060010.24 , HORVU6Hr1G060010.25 , HORVU6Hr1G060010.26 , HORVU6Hr1G060010.27
Wheat TraesCS6B02G263200 , TraesCS6B02G263200 , TraesCS6B02G263200 , TraesCS6A02G234500 , TraesCS6A02G234500 , TraesCS6D02G217000 , TraesCS6D02G217000 , TraesCS6D02G217000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G126000 26S proteasome non-ATPase regulatory subunit 6, putative, expressed K03037: PSMD6, 26S proteasome regulatory subunit N7
2 Sobic.010G040900 trafficking protein particle complex subunit 4, putative, expressed -
3 Sobic.009G117200 expressed protein -
4 Sobic.003G096000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@fructose-bisphospate aldolase isozyme, putative, expressed K01623: fructose-bisphosphate aldolase, class I
5 Sobic.003G326800 glycerol-3-phosphate dehydrogenase, putative, expressed K00006: glycerol-3-phosphate dehydrogenase (NAD+)
6 Sobic.003G428200 MEMO1, putative, expressed K06990: MEMO1 family protein
7 Sobic.001G350600 cytochrome c oxidase subunit, putative, expressed K02267: cytochrome c oxidase subunit 6b
8 Sobic.004G335000 26S protease regulatory subunit 6A, putative, expressed K03065: PSMC3, 26S proteasome regulatory subunit T5
9 Sobic.004G030000 mitochondrial ATP synthase precursor, putative, expressed -
10 Sobic.001G058100 thioredoxin, putative, expressed -
11 Sobic.001G073600 4Fe-4S binding domain containing protein, expressed K03941: NADH dehydrogenase (ubiquinone) Fe-S protein 8
12 Sobic.010G046300 rRNA-processing protein FCF, putative, expressed K14566: UTP24, U3 small nucleolar RNA-associated protein 24
13 Sobic.001G010700 proteasome subunit, putative, expressed K03035: PSMD12, 26S proteasome regulatory subunit N5
14 Sobic.003G152900 -(PubMedID : 26976818)@dihydrolipoyl dehydrogenase 1, mitochondrial precursor, putative, expressed K00382: DLD, lpd, dihydrolipoamide dehydrogenase
15 Sobic.003G340700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@expressed protein -
16 Sobic.001G206700 succinate dehydrogenase subunit 3, putative, expressed K00236: SDHC, succinate dehydrogenase (ubiquinone) cytochrome b560 subunit
17 Sobic.004G344800 NADH dehydrogenase 1 alpha subcomplex subunit 9,mitochondrial precursor, putative, expressed K03953: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 9
18 Sobic.004G056400 glyceraldehyde-3-phosphate dehydrogenase, putative, expressed K00134: GAPDH, glyceraldehyde 3-phosphate dehydrogenase
19 Sobic.007G176200 26S proteasome non-ATPase regulatory subunit 3, putative, expressed K03033: PSMD3, 26S proteasome regulatory subunit N3
20 Sobic.003G124300 peroxiredoxin, putative, expressed -


Gene co-expression network
sample Sobic004G226500 Sobic004G226500 Sobic006G126000 Sobic006G126000 Sobic004G226500--Sobic006G126000 Sobic010G040900 Sobic010G040900 Sobic004G226500--Sobic010G040900 Sobic009G117200 Sobic009G117200 Sobic004G226500--Sobic009G117200 Sobic003G096000 Sobic003G096000 Sobic004G226500--Sobic003G096000 Sobic003G326800 Sobic003G326800 Sobic004G226500--Sobic003G326800 Sobic003G428200 Sobic003G428200 Sobic004G226500--Sobic003G428200 Sobic001G350600 Sobic001G350600 Sobic004G226500--Sobic001G350600 Sobic004G335000 Sobic004G335000 Sobic004G226500--Sobic004G335000 Sobic004G030000 Sobic004G030000 Sobic004G226500--Sobic004G030000 Sobic001G031900 Sobic001G031900 Sobic006G126000--Sobic001G031900 Sobic006G126000--Sobic010G040900 Sobic003G330500 Sobic003G330500 Sobic006G126000--Sobic003G330500 Sobic007G176200 Sobic007G176200 Sobic006G126000--Sobic007G176200 Sobic003G135600 Sobic003G135600 Sobic006G126000--Sobic003G135600 Sobic010G008800 Sobic010G008800 Sobic006G126000--Sobic010G008800 Sobic006G126000--Sobic001G350600 Sobic003G152900 Sobic003G152900 Sobic006G126000--Sobic003G152900 Sobic006G126000--Sobic004G030000 Sobic004G039400 Sobic004G039400 Sobic010G040900--Sobic004G039400 Sobic001G443200 Sobic001G443200 Sobic010G040900--Sobic001G443200 Sobic009G191400 Sobic009G191400 Sobic010G040900--Sobic009G191400 Sobic001G008100 Sobic001G008100 Sobic010G040900--Sobic001G008100 Sobic001G178500 Sobic001G178500 Sobic010G040900--Sobic001G178500 Sobic010G040900--Sobic006G126000 Sobic003G261800 Sobic003G261800 Sobic010G040900--Sobic003G261800 Sobic010G040900--Sobic003G135600 Sobic004G344800 Sobic004G344800 Sobic010G040900--Sobic004G344800 Sobic001G206700 Sobic001G206700 Sobic009G117200--Sobic001G206700 Sobic004G056400 Sobic004G056400 Sobic009G117200--Sobic004G056400 Sobic009G117200--Sobic003G428200 Sobic009G117200--Sobic004G344800 Sobic001G073600 Sobic001G073600 Sobic009G117200--Sobic001G073600 Sobic009G211900 Sobic009G211900 Sobic009G117200--Sobic009G211900 Sobic009G117200--Sobic003G096000 Sobic002G309700 Sobic002G309700 Sobic009G117200--Sobic002G309700 Sobic006G013000 Sobic006G013000 Sobic009G117200--Sobic006G013000 Sobic003G096000--Sobic004G056400 Sobic010G089500 Sobic010G089500 Sobic003G096000--Sobic010G089500 Sobic003G096000--Sobic001G350600 Sobic010G101600 Sobic010G101600 Sobic003G096000--Sobic010G101600 Sobic002G356400 Sobic002G356400 Sobic003G096000--Sobic002G356400 Sobic001G030300 Sobic001G030300 Sobic003G096000--Sobic001G030300 Sobic002G180300 Sobic002G180300 Sobic003G096000--Sobic002G180300 Sobic003G096000--Sobic006G013000 Sobic001G047800 Sobic001G047800 Sobic003G096000--Sobic001G047800 Sobic003G326800--Sobic003G096000 Sobic003G326800--Sobic004G226500 Sobic003G326800--Sobic004G056400 Sobic002G186900 Sobic002G186900 Sobic003G326800--Sobic002G186900 Sobic003G340700 Sobic003G340700 Sobic003G326800--Sobic003G340700 Sobic003G326800--Sobic006G126000 Sobic007G150000 Sobic007G150000 Sobic003G326800--Sobic007G150000 Sobic003G326800--Sobic010G101600 Sobic009G164700 Sobic009G164700 Sobic003G326800--Sobic009G164700 Sobic003G428200--Sobic009G117200 Sobic004G204800 Sobic004G204800 Sobic003G428200--Sobic004G204800 Sobic001G010700 Sobic001G010700 Sobic003G428200--Sobic001G010700 Sobic009G139800 Sobic009G139800 Sobic003G428200--Sobic009G139800 Sobic007G076300 Sobic007G076300 Sobic003G428200--Sobic007G076300 Sobic001G109300 Sobic001G109300 Sobic003G428200--Sobic001G109300 Sobic009G093200 Sobic009G093200 Sobic003G428200--Sobic009G093200 Sobic002G257400 Sobic002G257400 Sobic003G428200--Sobic002G257400 Sobic003G428200--Sobic007G176200 Sobic004G170400 Sobic004G170400 Sobic001G350600--Sobic004G170400 Sobic004G259200 Sobic004G259200 Sobic001G350600--Sobic004G259200 Sobic001G350600--Sobic002G356400 Sobic001G074700 Sobic001G074700 Sobic001G350600--Sobic001G074700 Sobic001G465800 Sobic001G465800 Sobic001G350600--Sobic001G465800 Sobic003G209000 Sobic003G209000 Sobic001G350600--Sobic003G209000 Sobic001G404800 Sobic001G404800 Sobic001G350600--Sobic001G404800 Sobic009G119900 Sobic009G119900 Sobic001G350600--Sobic009G119900 Sobic001G350600--Sobic004G030000 Sobic002G428200 Sobic002G428200 Sobic004G335000--Sobic002G428200 Sobic004G335000--Sobic007G176200 Sobic004G335000--Sobic001G010700 Sobic004G335000--Sobic002G257400 Sobic006G252200 Sobic006G252200 Sobic004G335000--Sobic006G252200 Sobic001G236300 Sobic001G236300 Sobic004G335000--Sobic001G236300 Sobic001G461900 Sobic001G461900 Sobic004G335000--Sobic001G461900 Sobic001G058100 Sobic001G058100 Sobic004G335000--Sobic001G058100 Sobic007G045600 Sobic007G045600 Sobic004G335000--Sobic007G045600 Sobic004G030000--Sobic003G152900 Sobic004G030000--Sobic001G350600 Sobic004G030000--Sobic001G465800 Sobic004G030000--Sobic002G309700 Sobic004G030000--Sobic001G074700 Sobic004G030000--Sobic004G170400 Sobic010G007400 Sobic010G007400 Sobic004G030000--Sobic010G007400 Sobic004G030000--Sobic004G344800 Sobic004G159000 Sobic004G159000 Sobic004G030000--Sobic004G159000
Octagon: transcription factors


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