Gene annotation
Transcriptome id Sobic.003G428200.1
Synonym Sb03g046030
Functional annotation MEMO1, putative, expressed
UniProt C5XHX7
Pfam PF01875
Panther DB PTHR11060 PTHR11060:SF0
NCBI CDD KOG3086; Predicted dioxygenase
KEGG Orthology K06990; MEMO1 family protein
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G25280 : -
RAP-DB (Rice) LOC_Os08g20270.1 : MEMO1, putative, expressed
MaizeGDB (Corn) Zm00025a039116
Brachypodium KQJ95969
Barley HORVU7Hr1G118230.4 , HORVU7Hr1G118230.1 , HORVU7Hr1G118230.2 , HORVU7Hr1G118230.3
Wheat TraesCS7B02G454700 , TraesCS7D02G522800 , TraesCS7A02G536200 , TraesCS7A02G536200
Populus -


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cDNA sequences
Sobic.003G428200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G117200 expressed protein -
2 Sobic.004G204800 26S proteasome non-ATPase regulatory subunit 6, putative, expressed K03037: PSMD6, 26S proteasome regulatory subunit N7
3 Sobic.001G010700 proteasome subunit, putative, expressed K03035: PSMD12, 26S proteasome regulatory subunit N5
4 Sobic.009G139800 rab GDP dissociation inhibitor alpha, putative, expressed K17255: Rab GDP dissociation inhibitor
5 Sobic.007G076300 26S proteasome non-ATPase regulatory subunit 8, putative, expressed K03031: PSMD8, 26S proteasome regulatory subunit N12
6 Sobic.001G109300 adenylyl cyclase-associated protein, putative, expressed K17261: CAP1_2, adenylyl cyclase-associated protein
7 Sobic.009G093200 superoxide dismutase, mitochondrial precursor, putative, expressed K04564: superoxide dismutase, Fe-Mn family
8 Sobic.002G257400 peptidase, T1 family, putative, expressed -
9 Sobic.007G176200 26S proteasome non-ATPase regulatory subunit 3, putative, expressed K03033: PSMD3, 26S proteasome regulatory subunit N3
10 Sobic.004G335000 26S protease regulatory subunit 6A, putative, expressed K03065: PSMC3, 26S proteasome regulatory subunit T5
11 Sobic.006G252200 MEE34, putative, expressed K03038: PSMD7, 26S proteasome regulatory subunit N8
12 Sobic.008G150300 Lg106, putative, expressed -
13 Sobic.002G423800 trafficking protein particle complex subunit, putative, expressed -
14 Sobic.006G114400 OsGrx_S15.2 - glutaredoxin subgroup II, expressed K07390: grxD, monothiol glutaredoxin
15 Sobic.006G211800 coatomer subunit epsilon, putative, expressed K17268: coatomer subunit epsilon
16 Sobic.010G044200 GLTP domain containing protein, putative, expressed -
17 Sobic.001G478000 CutA, chloroplast precursor, putative, expressed K03926: periplasmic divalent cation tolerance protein
18 Sobic.003G330500 peptidase, T1 family, putative, expressed -
19 Sobic.001G058100 thioredoxin, putative, expressed -
20 Sobic.004G226500 dehydrogenase, putative, expressed K00001: E1.1.1.1, alcohol dehydrogenase


Gene co-expression network
sample Sobic003G428200 Sobic003G428200 Sobic009G117200 Sobic009G117200 Sobic003G428200--Sobic009G117200 Sobic004G204800 Sobic004G204800 Sobic003G428200--Sobic004G204800 Sobic001G010700 Sobic001G010700 Sobic003G428200--Sobic001G010700 Sobic009G139800 Sobic009G139800 Sobic003G428200--Sobic009G139800 Sobic007G076300 Sobic007G076300 Sobic003G428200--Sobic007G076300 Sobic001G109300 Sobic001G109300 Sobic003G428200--Sobic001G109300 Sobic009G093200 Sobic009G093200 Sobic003G428200--Sobic009G093200 Sobic002G257400 Sobic002G257400 Sobic003G428200--Sobic002G257400 Sobic007G176200 Sobic007G176200 Sobic003G428200--Sobic007G176200 Sobic001G206700 Sobic001G206700 Sobic009G117200--Sobic001G206700 Sobic004G056400 Sobic004G056400 Sobic009G117200--Sobic004G056400 Sobic009G117200--Sobic003G428200 Sobic004G344800 Sobic004G344800 Sobic009G117200--Sobic004G344800 Sobic001G073600 Sobic001G073600 Sobic009G117200--Sobic001G073600 Sobic009G211900 Sobic009G211900 Sobic009G117200--Sobic009G211900 Sobic003G096000 Sobic003G096000 Sobic009G117200--Sobic003G096000 Sobic002G309700 Sobic002G309700 Sobic009G117200--Sobic002G309700 Sobic006G013000 Sobic006G013000 Sobic009G117200--Sobic006G013000 Sobic004G204800--Sobic002G257400 Sobic007G152400 Sobic007G152400 Sobic004G204800--Sobic007G152400 Sobic004G335000 Sobic004G335000 Sobic004G204800--Sobic004G335000 Sobic003G043400 Sobic003G043400 Sobic004G204800--Sobic003G043400 Sobic010G266300 Sobic010G266300 Sobic004G204800--Sobic010G266300 Sobic001G058100 Sobic001G058100 Sobic004G204800--Sobic001G058100 Sobic002G428200 Sobic002G428200 Sobic004G204800--Sobic002G428200 Sobic004G204800--Sobic003G428200 Sobic004G204800--Sobic001G010700 Sobic001G010700--Sobic007G176200 Sobic006G252200 Sobic006G252200 Sobic001G010700--Sobic006G252200 Sobic001G458700 Sobic001G458700 Sobic001G010700--Sobic001G458700 Sobic003G330500 Sobic003G330500 Sobic001G010700--Sobic003G330500 Sobic001G010700--Sobic004G335000 Sobic001G010700--Sobic002G428200 Sobic004G224900 Sobic004G224900 Sobic001G010700--Sobic004G224900 Sobic001G010700--Sobic003G043400 Sobic002G423800 Sobic002G423800 Sobic001G010700--Sobic002G423800 Sobic006G114400 Sobic006G114400 Sobic009G139800--Sobic006G114400 Sobic009G139800--Sobic001G109300 Sobic008G113600 Sobic008G113600 Sobic009G139800--Sobic008G113600 Sobic009G139800--Sobic003G428200 Sobic002G141700 Sobic002G141700 Sobic009G139800--Sobic002G141700 Sobic009G139800--Sobic001G058100 Sobic003G087000 Sobic003G087000 Sobic009G139800--Sobic003G087000 Sobic003G280300 Sobic003G280300 Sobic009G139800--Sobic003G280300 Sobic009G139800--Sobic001G010700 Sobic007G076300--Sobic004G224900 Sobic004G138800 Sobic004G138800 Sobic007G076300--Sobic004G138800 Sobic007G076300--Sobic002G257400 Sobic007G076300--Sobic003G330500 Sobic001G505500 Sobic001G505500 Sobic007G076300--Sobic001G505500 Sobic003G129800 Sobic003G129800 Sobic007G076300--Sobic003G129800 Sobic004G310300 Sobic004G310300 Sobic007G076300--Sobic004G310300 Sobic005G050500 Sobic005G050500 Sobic007G076300--Sobic005G050500 Sobic010G154700 Sobic010G154700 Sobic007G076300--Sobic010G154700 Sobic001G109300--Sobic007G176200 Sobic001G109300--Sobic009G139800 Sobic001G109300--Sobic006G252200 Sobic001G109300--Sobic001G010700 Sobic001G109300--Sobic003G428200 Sobic001G109300--Sobic003G330500 Sobic001G281900 Sobic001G281900 Sobic001G109300--Sobic001G281900 Sobic001G109300--Sobic001G458700 Sobic009G067000 Sobic009G067000 Sobic001G109300--Sobic009G067000 Sobic009G093200--Sobic003G428200 Sobic003G244200 Sobic003G244200 Sobic009G093200--Sobic003G244200 Sobic006G203100 Sobic006G203100 Sobic009G093200--Sobic006G203100 Sobic010G044200 Sobic010G044200 Sobic009G093200--Sobic010G044200 Sobic010G073100 Sobic010G073100 Sobic009G093200--Sobic010G073100 Sobic009G093200--Sobic002G423800 Sobic001G338400 Sobic001G338400 Sobic009G093200--Sobic001G338400 Sobic006G211800 Sobic006G211800 Sobic009G093200--Sobic006G211800 Sobic001G478000 Sobic001G478000 Sobic009G093200--Sobic001G478000 Sobic002G257400--Sobic007G076300 Sobic002G257400--Sobic004G224900 Sobic002G257400--Sobic004G335000 Sobic002G257400--Sobic002G428200 Sobic002G257400--Sobic007G152400 Sobic002G257400--Sobic004G204800 Sobic007G186800 Sobic007G186800 Sobic002G257400--Sobic007G186800 Sobic002G257400--Sobic004G138800 Sobic002G257400--Sobic001G058100 Sobic007G176200--Sobic001G458700 Sobic007G176200--Sobic001G010700 Sobic007G176200--Sobic006G252200 Sobic007G176200--Sobic003G330500 Sobic007G176200--Sobic004G224900 Sobic007G176200--Sobic002G428200 Sobic007G176200--Sobic004G335000 Sobic002G341800 Sobic002G341800 Sobic007G176200--Sobic002G341800 Sobic007G176200--Sobic009G067000
Octagon: transcription factors


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