Gene annotation
Transcriptome id Sobic.009G093200.1
Synonym MEE33, Sb09g011450, ATMSD1, MSD1
Functional annotation superoxide dismutase, mitochondrial precursor, putative, expressed
UniProt C5YVR0
Pfam PF00081 PF02777
Panther DB PTHR11404 PTHR11404:SF6
NCBI CDD KOG0876; Manganese superoxide dismutase
KEGG Orthology K04564; superoxide dismutase, Fe-Mn family
Gene Ontology GO:0006801; superoxide metabolic process GO:0004784superoxide dismutase activity


Orthologs (automatic annotation)
TAIR AT3G10920 : manganese superoxide dismutase 1
RAP-DB (Rice) LOC_Os05g25850.1 : superoxide dismutase, mitochondrial precursor, putative, expressed
MaizeGDB (Corn) Zm00025a037092 , Zm00025a043291
Brachypodium KQK06856 , KQK06855
Barley HORVU2Hr1G117740.2 , HORVU2Hr1G117740.3
Wheat TraesCS2A02G537100 , TraesCS2B02G567600 , TraesCS2D02G538300
Populus -


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cDNA sequences
Sobic.009G093200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G428200 MEMO1, putative, expressed K06990: MEMO1 family protein
2 Sobic.003G244200 vacuolar ATP synthase subunit E, putative, expressed K02150: ATPeV1E, V-type H+-transporting ATPase subunit E
3 Sobic.006G203100 expressed protein -
4 Sobic.010G044200 GLTP domain containing protein, putative, expressed -
5 Sobic.010G073100 2Fe-2S iron-sulfur cluster binding domain containing protein, expressed -
6 Sobic.002G423800 trafficking protein particle complex subunit, putative, expressed -
7 Sobic.001G338400 glycosyl transferase 8 domain containing protein, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
8 Sobic.006G211800 coatomer subunit epsilon, putative, expressed K17268: coatomer subunit epsilon
9 Sobic.001G478000 CutA, chloroplast precursor, putative, expressed K03926: periplasmic divalent cation tolerance protein
10 Sobic.006G252200 MEE34, putative, expressed K03038: PSMD7, 26S proteasome regulatory subunit N8
11 Sobic.008G145100 glycosyl transferase, group 1 domain containing protein, expressed K03844: alpha-1,2-mannosyltransferase
12 Sobic.002G113800 spermidine synthase, putative, expressed K00797: speE, SRM, spermidine synthase
13 Sobic.008G150300 Lg106, putative, expressed -
14 Sobic.003G009300 methyltransferase domain containing protein, putative, expressed K06127: 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase
15 Sobic.006G114400 OsGrx_S15.2 - glutaredoxin subgroup II, expressed K07390: grxD, monothiol glutaredoxin
16 Sobic.007G176200 26S proteasome non-ATPase regulatory subunit 3, putative, expressed K03033: PSMD3, 26S proteasome regulatory subunit N3
17 Sobic.009G240900 ras-related protein, putative, expressed K07936: GTP-binding nuclear protein Ran
18 Sobic.003G052400 proline-rich family protein, putative, expressed -
19 Sobic.007G161200 expressed protein -
20 Sobic.001G281900 miro, putative, expressed K07977: Arf/Sar family, other


Gene co-expression network
sample Sobic009G093200 Sobic009G093200 Sobic003G428200 Sobic003G428200 Sobic009G093200--Sobic003G428200 Sobic003G244200 Sobic003G244200 Sobic009G093200--Sobic003G244200 Sobic006G203100 Sobic006G203100 Sobic009G093200--Sobic006G203100 Sobic010G044200 Sobic010G044200 Sobic009G093200--Sobic010G044200 Sobic010G073100 Sobic010G073100 Sobic009G093200--Sobic010G073100 Sobic002G423800 Sobic002G423800 Sobic009G093200--Sobic002G423800 Sobic001G338400 Sobic001G338400 Sobic009G093200--Sobic001G338400 Sobic006G211800 Sobic006G211800 Sobic009G093200--Sobic006G211800 Sobic001G478000 Sobic001G478000 Sobic009G093200--Sobic001G478000 Sobic009G117200 Sobic009G117200 Sobic003G428200--Sobic009G117200 Sobic004G204800 Sobic004G204800 Sobic003G428200--Sobic004G204800 Sobic001G010700 Sobic001G010700 Sobic003G428200--Sobic001G010700 Sobic009G139800 Sobic009G139800 Sobic003G428200--Sobic009G139800 Sobic007G076300 Sobic007G076300 Sobic003G428200--Sobic007G076300 Sobic001G109300 Sobic001G109300 Sobic003G428200--Sobic001G109300 Sobic003G428200--Sobic009G093200 Sobic002G257400 Sobic002G257400 Sobic003G428200--Sobic002G257400 Sobic007G176200 Sobic007G176200 Sobic003G428200--Sobic007G176200 Sobic006G002201 Sobic006G002201 Sobic003G244200--Sobic006G002201 Sobic003G244200--Sobic009G093200 Sobic005G133900 Sobic005G133900 Sobic003G244200--Sobic005G133900 Sobic007G161200 Sobic007G161200 Sobic003G244200--Sobic007G161200 Sobic003G216500 Sobic003G216500 Sobic003G244200--Sobic003G216500 Sobic002G363100 Sobic002G363100 Sobic003G244200--Sobic002G363100 Sobic004G099900 Sobic004G099900 Sobic003G244200--Sobic004G099900 Sobic010G180400 Sobic010G180400 Sobic003G244200--Sobic010G180400 Sobic004G082900 Sobic004G082900 Sobic003G244200--Sobic004G082900 Sobic002G256200 Sobic002G256200 Sobic006G203100--Sobic002G256200 Sobic006G203100--Sobic010G073100 Sobic002G341800 Sobic002G341800 Sobic006G203100--Sobic002G341800 Sobic008G145100 Sobic008G145100 Sobic006G203100--Sobic008G145100 Sobic006G203100--Sobic001G338400 Sobic001G145500 Sobic001G145500 Sobic006G203100--Sobic001G145500 Sobic002G029300 Sobic002G029300 Sobic006G203100--Sobic002G029300 Sobic001G249700 Sobic001G249700 Sobic006G203100--Sobic001G249700 Sobic006G183000 Sobic006G183000 Sobic006G203100--Sobic006G183000 Sobic004G224900 Sobic004G224900 Sobic010G044200--Sobic004G224900 Sobic001G058100 Sobic001G058100 Sobic010G044200--Sobic001G058100 Sobic010G044200--Sobic007G076300 Sobic001G481700 Sobic001G481700 Sobic010G044200--Sobic001G481700 Sobic006G252200 Sobic006G252200 Sobic010G044200--Sobic006G252200 Sobic003G330500 Sobic003G330500 Sobic010G044200--Sobic003G330500 Sobic010G044200--Sobic007G176200 Sobic010G044200--Sobic002G257400 Sobic004G138800 Sobic004G138800 Sobic010G044200--Sobic004G138800 Sobic002G113800 Sobic002G113800 Sobic010G073100--Sobic002G113800 Sobic010G073100--Sobic008G145100 Sobic007G184500 Sobic007G184500 Sobic010G073100--Sobic007G184500 Sobic001G033500 Sobic001G033500 Sobic010G073100--Sobic001G033500 Sobic010G073100--Sobic006G203100 Sobic004G010900 Sobic004G010900 Sobic010G073100--Sobic004G010900 Sobic002G281300 Sobic002G281300 Sobic010G073100--Sobic002G281300 Sobic006G044600 Sobic006G044600 Sobic010G073100--Sobic006G044600 Sobic010G073100--Sobic001G010700 Sobic003G043400 Sobic003G043400 Sobic002G423800--Sobic003G043400 Sobic002G423800--Sobic006G211800 Sobic002G423800--Sobic001G010700 Sobic001G444300 Sobic001G444300 Sobic002G423800--Sobic001G444300 Sobic002G428200 Sobic002G428200 Sobic002G423800--Sobic002G428200 Sobic001G542900 Sobic001G542900 Sobic002G423800--Sobic001G542900 Sobic002G423800--Sobic006G252200 Sobic002G423800--Sobic008G145100 Sobic002G423800--Sobic007G176200 Sobic003G348800 Sobic003G348800 Sobic001G338400--Sobic003G348800 Sobic008G150300 Sobic008G150300 Sobic001G338400--Sobic008G150300 Sobic001G281900 Sobic001G281900 Sobic001G338400--Sobic001G281900 Sobic001G338400--Sobic001G145500 Sobic001G338400--Sobic004G010900 Sobic001G490500 Sobic001G490500 Sobic001G338400--Sobic001G490500 Sobic001G230100 Sobic001G230100 Sobic001G338400--Sobic001G230100 Sobic002G342500 Sobic002G342500 Sobic001G338400--Sobic002G342500 Sobic006G029000 Sobic006G029000 Sobic001G338400--Sobic006G029000 Sobic006G211800--Sobic002G428200 Sobic006G211800--Sobic007G176200 Sobic006G211800--Sobic002G423800 Sobic006G211800--Sobic006G252200 Sobic005G105500 Sobic005G105500 Sobic006G211800--Sobic005G105500 Sobic009G234400 Sobic009G234400 Sobic006G211800--Sobic009G234400 Sobic006G211800--Sobic001G444300 Sobic001G404100 Sobic001G404100 Sobic006G211800--Sobic001G404100 Sobic009G212300 Sobic009G212300 Sobic006G211800--Sobic009G212300 Sobic009G240900 Sobic009G240900 Sobic001G478000--Sobic009G240900 Sobic009G144300 Sobic009G144300 Sobic001G478000--Sobic009G144300 Sobic001G388600 Sobic001G388600 Sobic001G478000--Sobic001G388600 Sobic001G478000--Sobic007G076300 Sobic002G255100 Sobic002G255100 Sobic001G478000--Sobic002G255100 Sobic001G478000--Sobic004G138800 Sobic004G216800 Sobic004G216800 Sobic001G478000--Sobic004G216800 Sobic001G096100 Sobic001G096100 Sobic001G478000--Sobic001G096100 Sobic009G227400 Sobic009G227400 Sobic001G478000--Sobic009G227400
Octagon: transcription factors


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