Gene annotation
Transcriptome id Sobic.009G240900.1
Synonym RAN3, ATRAN3, Sb09g029250
Functional annotation ras-related protein, putative, expressed
UniProt C5YW22
Pfam PF00025
Panther DB PTHR24071
NCBI CDD KOG0096; GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily
KEGG Orthology K07936; GTP-binding nuclear protein Ran
Gene Ontology GO:0005525; GTP binding


Orthologs (automatic annotation)
TAIR AT5G55190 : RAN GTPase 3
RAP-DB (Rice) LOC_Os05g49890.1 : ras-related protein, putative, expressed
MaizeGDB (Corn) Zm00025a038686 , Zm00025a044657 , Zm00025a028244
Brachypodium KQK04751 , KQK17802
Barley HORVU1Hr1G090760.7 , HORVU1Hr1G090760.6 , HORVU1Hr1G090760.4 , HORVU1Hr1G090760.3 , HORVU1Hr1G090760.2 , HORVU1Hr1G090760.1 , HORVU1Hr1G090760.8 , HORVU0Hr1G030130.1
Wheat TraesCS1B02G443100 , TraesCS1B02G443100 , TraesCS1A02G413000 , TraesCS1D02G420600 , TraesCS1D02G420600
Populus PNS92409


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cDNA sequences
Sobic.009G240900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G478000 CutA, chloroplast precursor, putative, expressed K03926: periplasmic divalent cation tolerance protein
2 Sobic.002G363100 eukaryotic translation initiation factor 5A, putative, expressed K03263: translation initiation factor 5A
3 Sobic.004G138800 prefoldin subunit, putative, expressed K09548: prefoldin subunit 1
4 Sobic.007G076300 26S proteasome non-ATPase regulatory subunit 8, putative, expressed K03031: PSMD8, 26S proteasome regulatory subunit N12
5 Sobic.004G310300 phosphate carrier protein, mitochondrial precursor, putative, expressed K15102: SLC25A3, PHC, solute carrier family 25 (mitochondrial phosphate transporter), member 3
6 Sobic.001G040800 ADP-ribosylation factor, putative, expressed K07937: ADP-ribosylation factor 1/2
K07977: Arf/Sar family, other
7 Sobic.003G368500 Yip1 domain containing protein, expressed -
8 Sobic.007G051000 mitochondrial NADH-ubiquinone oxidoreductase, putative, expressed K03939: NADH dehydrogenase (ubiquinone) Fe-S protein 6
9 Sobic.002G428200 26S protease regulatory subunit 4, putative, expressed K03062: PSMC1, 26S proteasome regulatory subunit T2
10 Sobic.001G007600 GTPase-activating protein, putative, expressed K12493: ADP-ribosylation factor GTPase-activating protein 2/3
11 Sobic.004G334800 vacuolar protein sorting 55 family protein, putative, expressed -
12 Sobic.010G018400 expressed protein K02153: ATPeV0E, V-type H+-transporting ATPase subunit e
13 Sobic.007G114200 alpha-soluble NSF attachment protein, putative, expressed K15296: NAPA, SNAPA, alpha-soluble NSF attachment protein
14 Sobic.003G104700 Rer1 protein, putative, expressed -
15 Sobic.002G257400 peptidase, T1 family, putative, expressed -
16 Sobic.004G327300 TMS membrane protein/tumour differentially expressed protein, putative, expressed -
17 Sobic.001G034700 actin-depolymerizing factor, putative, expressed K05765: cofilin
18 Sobic.002G261900 arabinogalactan protein, putative, expressed -
19 Sobic.004G066800 peptidase, T1 family, putative, expressed K02735: 20S proteasome subunit beta 3
20 Sobic.009G008600 REX1 DNA Repair family protein, expressed K10845: TTDA, GTF2H5, TFIIH basal transcription factor complex TTD-A subunit


Gene co-expression network
sample Sobic009G240900 Sobic009G240900 Sobic001G478000 Sobic001G478000 Sobic009G240900--Sobic001G478000 Sobic002G363100 Sobic002G363100 Sobic009G240900--Sobic002G363100 Sobic004G138800 Sobic004G138800 Sobic009G240900--Sobic004G138800 Sobic007G076300 Sobic007G076300 Sobic009G240900--Sobic007G076300 Sobic004G310300 Sobic004G310300 Sobic009G240900--Sobic004G310300 Sobic001G040800 Sobic001G040800 Sobic009G240900--Sobic001G040800 Sobic003G368500 Sobic003G368500 Sobic009G240900--Sobic003G368500 Sobic007G051000 Sobic007G051000 Sobic009G240900--Sobic007G051000 Sobic002G428200 Sobic002G428200 Sobic009G240900--Sobic002G428200 Sobic001G478000--Sobic009G240900 Sobic009G144300 Sobic009G144300 Sobic001G478000--Sobic009G144300 Sobic001G388600 Sobic001G388600 Sobic001G478000--Sobic001G388600 Sobic001G478000--Sobic007G076300 Sobic002G255100 Sobic002G255100 Sobic001G478000--Sobic002G255100 Sobic001G478000--Sobic004G138800 Sobic004G216800 Sobic004G216800 Sobic001G478000--Sobic004G216800 Sobic001G096100 Sobic001G096100 Sobic001G478000--Sobic001G096100 Sobic009G227400 Sobic009G227400 Sobic001G478000--Sobic009G227400 Sobic002G363100--Sobic009G240900 Sobic002G363100--Sobic001G040800 Sobic009G001400 Sobic009G001400 Sobic002G363100--Sobic009G001400 Sobic001G357300 Sobic001G357300 Sobic002G363100--Sobic001G357300 Sobic007G114200 Sobic007G114200 Sobic002G363100--Sobic007G114200 Sobic009G217900 Sobic009G217900 Sobic002G363100--Sobic009G217900 Sobic001G005900 Sobic001G005900 Sobic002G363100--Sobic001G005900 Sobic004G130100 Sobic004G130100 Sobic002G363100--Sobic004G130100 Sobic004G327300 Sobic004G327300 Sobic002G363100--Sobic004G327300 Sobic001G418900 Sobic001G418900 Sobic004G138800--Sobic001G418900 Sobic004G224900 Sobic004G224900 Sobic004G138800--Sobic004G224900 Sobic004G138800--Sobic007G076300 Sobic001G505500 Sobic001G505500 Sobic004G138800--Sobic001G505500 Sobic009G119900 Sobic009G119900 Sobic004G138800--Sobic009G119900 Sobic004G138800--Sobic001G096100 Sobic003G330500 Sobic003G330500 Sobic004G138800--Sobic003G330500 Sobic001G007600 Sobic001G007600 Sobic004G138800--Sobic001G007600 Sobic006G252200 Sobic006G252200 Sobic004G138800--Sobic006G252200 Sobic007G076300--Sobic004G224900 Sobic007G076300--Sobic004G138800 Sobic002G257400 Sobic002G257400 Sobic007G076300--Sobic002G257400 Sobic007G076300--Sobic003G330500 Sobic007G076300--Sobic001G505500 Sobic003G129800 Sobic003G129800 Sobic007G076300--Sobic003G129800 Sobic007G076300--Sobic004G310300 Sobic005G050500 Sobic005G050500 Sobic007G076300--Sobic005G050500 Sobic010G154700 Sobic010G154700 Sobic007G076300--Sobic010G154700 Sobic004G310300--Sobic009G119900 Sobic004G259200 Sobic004G259200 Sobic004G310300--Sobic004G259200 Sobic004G310300--Sobic007G051000 Sobic001G018500 Sobic001G018500 Sobic004G310300--Sobic001G018500 Sobic010G204500 Sobic010G204500 Sobic004G310300--Sobic010G204500 Sobic003G155400 Sobic003G155400 Sobic004G310300--Sobic003G155400 Sobic004G066800 Sobic004G066800 Sobic004G310300--Sobic004G066800 Sobic001G513500 Sobic001G513500 Sobic004G310300--Sobic001G513500 Sobic005G188100 Sobic005G188100 Sobic004G310300--Sobic005G188100 Sobic002G194100 Sobic002G194100 Sobic001G040800--Sobic002G194100 Sobic003G253000 Sobic003G253000 Sobic001G040800--Sobic003G253000 Sobic001G040800--Sobic009G001400 Sobic001G040800--Sobic002G363100 Sobic002G202300 Sobic002G202300 Sobic001G040800--Sobic002G202300 Sobic003G130800 Sobic003G130800 Sobic001G040800--Sobic003G130800 Sobic002G355300 Sobic002G355300 Sobic001G040800--Sobic002G355300 Sobic001G040800--Sobic007G114200 Sobic007G088000 Sobic007G088000 Sobic001G040800--Sobic007G088000 Sobic010G213400 Sobic010G213400 Sobic003G368500--Sobic010G213400 Sobic010G018400 Sobic010G018400 Sobic003G368500--Sobic010G018400 Sobic001G224400 Sobic001G224400 Sobic003G368500--Sobic001G224400 Sobic003G368500--Sobic003G155400 Sobic003G368500--Sobic004G310300 Sobic004G284500 Sobic004G284500 Sobic003G368500--Sobic004G284500 Sobic003G368500--Sobic005G188100 Sobic003G368500--Sobic007G051000 Sobic003G368500--Sobic001G418900 Sobic010G012500 Sobic010G012500 Sobic007G051000--Sobic010G012500 Sobic009G176000 Sobic009G176000 Sobic007G051000--Sobic009G176000 Sobic002G398901 Sobic002G398901 Sobic007G051000--Sobic002G398901 Sobic004G211833 Sobic004G211833 Sobic007G051000--Sobic004G211833 Sobic002G190900 Sobic002G190900 Sobic007G051000--Sobic002G190900 Sobic006G083500 Sobic006G083500 Sobic007G051000--Sobic006G083500 Sobic007G051000--Sobic001G018500 Sobic003G209000 Sobic003G209000 Sobic007G051000--Sobic003G209000 Sobic007G051000--Sobic010G204500 Sobic004G335000 Sobic004G335000 Sobic002G428200--Sobic004G335000 Sobic007G176200 Sobic007G176200 Sobic002G428200--Sobic007G176200 Sobic006G211800 Sobic006G211800 Sobic002G428200--Sobic006G211800 Sobic002G428200--Sobic004G224900 Sobic002G428200--Sobic006G252200 Sobic001G502200 Sobic001G502200 Sobic002G428200--Sobic001G502200 Sobic008G137600 Sobic008G137600 Sobic002G428200--Sobic008G137600 Sobic001G010700 Sobic001G010700 Sobic002G428200--Sobic001G010700 Sobic003G104700 Sobic003G104700 Sobic002G428200--Sobic003G104700
Octagon: transcription factors


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