Gene annotation
Transcriptome id Sobic.002G428200.1
Synonym Sb02g043840
Functional annotation 26S protease regulatory subunit 4, putative, expressed
UniProt C5X6E9
Pfam PF07724
Panther DB PTHR23073
NCBI CDD -
KEGG Orthology K03062; PSMC1, 26S proteasome regulatory subunit T2
Gene Ontology GO:0005524; ATP binding


Orthologs (automatic annotation)
TAIR AT4G29040 : regulatory particle AAA-ATPase 2A
RAP-DB (Rice) LOC_Os07g49150.1 : 26S protease regulatory subunit 4, putative, expressed
MaizeGDB (Corn) Zm00025a049248 , Zm00025a002047 , Zm00025a015505
Brachypodium KQK14506 , PNT71925 , PNT71924 , KQK22083 , KQK07764 , KQK07761 , KQK07763 , KQK07762
Barley HORVU7Hr1G097490.2 , HORVU7Hr1G097490.1 , HORVU2Hr1G014770.5 , HORVU2Hr1G014770.4 , HORVU2Hr1G014770.3 , HORVU2Hr1G014770.2 , HORVU2Hr1G014770.1 , HORVU4Hr1G055060.2 , HORVU4Hr1G055060.3 , HORVU4Hr1G055060.1 , HORVU4Hr1G055060.4
Wheat TraesCS4D02G190600 , TraesCS4A02G115000 , TraesCS2B02G105700 , TraesCS4B02G189200 , TraesCS2D02G087900 , TraesCS2A02G090000
Populus -


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cDNA sequences
Sobic.002G428200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G335000 26S protease regulatory subunit 6A, putative, expressed K03065: PSMC3, 26S proteasome regulatory subunit T5
2 Sobic.007G176200 26S proteasome non-ATPase regulatory subunit 3, putative, expressed K03033: PSMD3, 26S proteasome regulatory subunit N3
3 Sobic.006G211800 coatomer subunit epsilon, putative, expressed K17268: coatomer subunit epsilon
4 Sobic.004G224900 peptidase, T1 family, putative, expressed K02726: 20S proteasome subunit alpha 2
5 Sobic.006G252200 MEE34, putative, expressed K03038: PSMD7, 26S proteasome regulatory subunit N8
6 Sobic.001G502200 peptidase, T1 family, putative, expressed K02729: 20S proteasome subunit alpha 5
7 Sobic.008G137600 RNA recognition motif containing protein, expressed K12900: FUS-interacting serine-arginine-rich protein 1
8 Sobic.001G010700 proteasome subunit, putative, expressed K03035: PSMD12, 26S proteasome regulatory subunit N5
9 Sobic.003G104700 Rer1 protein, putative, expressed -
10 Sobic.007G114200 alpha-soluble NSF attachment protein, putative, expressed K15296: NAPA, SNAPA, alpha-soluble NSF attachment protein
11 Sobic.002G257400 peptidase, T1 family, putative, expressed -
12 Sobic.007G152400 eukaryotic translation initiation factor 6, putative, expressed K03264: translation initiation factor 6
13 Sobic.001G458700 26S protease regulatory subunit 6B, putative, expressed K03063: PSMC4, 26S proteasome regulatory subunit T3
14 Sobic.003G330500 peptidase, T1 family, putative, expressed -
15 Sobic.003G043400 syntaxin, putative, expressed K08490: syntaxin 5
16 Sobic.004G066800 peptidase, T1 family, putative, expressed K02735: 20S proteasome subunit beta 3
17 Sobic.001G481700 eukaryotic translation initiation factor 3 subunit K, putative, expressed K15028: translation initiation factor 3 subunit K
18 Sobic.001G294900 KH domain containing protein, putative, expressed K13162: poly(rC)-binding protein 2
19 Sobic.001G025600 huntingtin-interacting protein HYPK, putative, expressed -
20 Sobic.007G091000 thioredoxin domain-containing protein 9, putative, expressed -


Gene co-expression network
sample Sobic002G428200 Sobic002G428200 Sobic004G335000 Sobic004G335000 Sobic002G428200--Sobic004G335000 Sobic007G176200 Sobic007G176200 Sobic002G428200--Sobic007G176200 Sobic006G211800 Sobic006G211800 Sobic002G428200--Sobic006G211800 Sobic004G224900 Sobic004G224900 Sobic002G428200--Sobic004G224900 Sobic006G252200 Sobic006G252200 Sobic002G428200--Sobic006G252200 Sobic001G502200 Sobic001G502200 Sobic002G428200--Sobic001G502200 Sobic008G137600 Sobic008G137600 Sobic002G428200--Sobic008G137600 Sobic001G010700 Sobic001G010700 Sobic002G428200--Sobic001G010700 Sobic003G104700 Sobic003G104700 Sobic002G428200--Sobic003G104700 Sobic004G335000--Sobic002G428200 Sobic004G335000--Sobic007G176200 Sobic004G335000--Sobic001G010700 Sobic002G257400 Sobic002G257400 Sobic004G335000--Sobic002G257400 Sobic004G335000--Sobic006G252200 Sobic001G236300 Sobic001G236300 Sobic004G335000--Sobic001G236300 Sobic001G461900 Sobic001G461900 Sobic004G335000--Sobic001G461900 Sobic001G058100 Sobic001G058100 Sobic004G335000--Sobic001G058100 Sobic007G045600 Sobic007G045600 Sobic004G335000--Sobic007G045600 Sobic001G458700 Sobic001G458700 Sobic007G176200--Sobic001G458700 Sobic007G176200--Sobic001G010700 Sobic007G176200--Sobic006G252200 Sobic003G330500 Sobic003G330500 Sobic007G176200--Sobic003G330500 Sobic007G176200--Sobic004G224900 Sobic007G176200--Sobic002G428200 Sobic007G176200--Sobic004G335000 Sobic002G341800 Sobic002G341800 Sobic007G176200--Sobic002G341800 Sobic009G067000 Sobic009G067000 Sobic007G176200--Sobic009G067000 Sobic006G211800--Sobic002G428200 Sobic006G211800--Sobic007G176200 Sobic002G423800 Sobic002G423800 Sobic006G211800--Sobic002G423800 Sobic006G211800--Sobic006G252200 Sobic005G105500 Sobic005G105500 Sobic006G211800--Sobic005G105500 Sobic009G234400 Sobic009G234400 Sobic006G211800--Sobic009G234400 Sobic001G444300 Sobic001G444300 Sobic006G211800--Sobic001G444300 Sobic001G404100 Sobic001G404100 Sobic006G211800--Sobic001G404100 Sobic009G212300 Sobic009G212300 Sobic006G211800--Sobic009G212300 Sobic004G224900--Sobic003G330500 Sobic004G224900--Sobic006G252200 Sobic004G224900--Sobic007G176200 Sobic004G138800 Sobic004G138800 Sobic004G224900--Sobic004G138800 Sobic007G076300 Sobic007G076300 Sobic004G224900--Sobic007G076300 Sobic001G481700 Sobic001G481700 Sobic004G224900--Sobic001G481700 Sobic004G224900--Sobic001G502200 Sobic004G224900--Sobic001G458700 Sobic004G224900--Sobic001G236300 Sobic006G252200--Sobic007G176200 Sobic006G252200--Sobic001G458700 Sobic006G252200--Sobic004G224900 Sobic006G252200--Sobic001G010700 Sobic006G252200--Sobic003G330500 Sobic006G252200--Sobic002G428200 Sobic006G252200--Sobic004G138800 Sobic001G283200 Sobic001G283200 Sobic006G252200--Sobic001G283200 Sobic001G096100 Sobic001G096100 Sobic006G252200--Sobic001G096100 Sobic001G315500 Sobic001G315500 Sobic001G502200--Sobic001G315500 Sobic007G168600 Sobic007G168600 Sobic001G502200--Sobic007G168600 Sobic001G502200--Sobic004G224900 Sobic003G124800 Sobic003G124800 Sobic001G502200--Sobic003G124800 Sobic001G502200--Sobic001G458700 Sobic001G502200--Sobic003G330500 Sobic001G502200--Sobic002G428200 Sobic002G078400 Sobic002G078400 Sobic001G502200--Sobic002G078400 Sobic001G502200--Sobic006G252200 Sobic001G532100 Sobic001G532100 Sobic008G137600--Sobic001G532100 Sobic001G402300 Sobic001G402300 Sobic008G137600--Sobic001G402300 Sobic001G294900 Sobic001G294900 Sobic008G137600--Sobic001G294900 Sobic008G137600--Sobic002G428200 Sobic003G273400 Sobic003G273400 Sobic008G137600--Sobic003G273400 Sobic006G109700 Sobic006G109700 Sobic008G137600--Sobic006G109700 Sobic008G137600--Sobic002G341800 Sobic008G137600--Sobic001G404100 Sobic008G137600--Sobic001G502200 Sobic001G010700--Sobic007G176200 Sobic001G010700--Sobic006G252200 Sobic001G010700--Sobic001G458700 Sobic001G010700--Sobic003G330500 Sobic001G010700--Sobic004G335000 Sobic001G010700--Sobic002G428200 Sobic001G010700--Sobic004G224900 Sobic003G043400 Sobic003G043400 Sobic001G010700--Sobic003G043400 Sobic001G010700--Sobic002G423800 Sobic003G104700--Sobic002G428200 Sobic003G104700--Sobic006G252200 Sobic003G104700--Sobic007G076300 Sobic003G104700--Sobic002G078400 Sobic003G367451 Sobic003G367451 Sobic003G104700--Sobic003G367451 Sobic007G091000 Sobic007G091000 Sobic003G104700--Sobic007G091000 Sobic003G104700--Sobic001G236300 Sobic003G104700--Sobic004G224900 Sobic003G104700--Sobic004G335000
Octagon: transcription factors


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