Gene annotation
Transcriptome id Sobic.006G211800.1
Synonym Sb06g028230
Functional annotation coatomer subunit epsilon, putative, expressed
UniProt C5YFP1
Pfam PF04733
Panther DB PTHR10805 PTHR10805:SF1
NCBI CDD KOG3081; Vesicle coat complex COPI, epsilon subunit
KEGG Orthology K17268; coatomer subunit epsilon
Gene Ontology GO:0006890; retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum GO:0005198structural molecule activity


Orthologs (automatic annotation)
TAIR AT1G30630 : Coatomer epsilon subunit
RAP-DB (Rice) LOC_Os04g52270.1 : coatomer subunit epsilon, putative, expressed
MaizeGDB (Corn) Zm00025a057009
Brachypodium KQK06959 , KQJ84546
Barley HORVU2Hr1G099380.1 , HORVU2Hr1G099460.1 , HORVU2Hr1G099460.2 , HORVU2Hr1G099460.3 , HORVU2Hr1G099460.4
Wheat TraesCS2D02G422600 , TraesCS2A02G424700 , TraesCS2A02G424700 , TraesCS2B02G444400 , TraesCS2B02G444400
Populus -


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cDNA sequences
Sobic.006G211800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G428200 26S protease regulatory subunit 4, putative, expressed K03062: PSMC1, 26S proteasome regulatory subunit T2
2 Sobic.007G176200 26S proteasome non-ATPase regulatory subunit 3, putative, expressed K03033: PSMD3, 26S proteasome regulatory subunit N3
3 Sobic.002G423800 trafficking protein particle complex subunit, putative, expressed -
4 Sobic.006G252200 MEE34, putative, expressed K03038: PSMD7, 26S proteasome regulatory subunit N8
5 Sobic.005G105500 expressed protein -
6 Sobic.009G234400 eukaryotic translation initiation factor 3 subunit D, putative, expressed K03251: translation initiation factor 3 subunit D
7 Sobic.001G444300 expressed protein -
8 Sobic.001G404100 expressed protein K03237: translation initiation factor 2 subunit 1
9 Sobic.009G212300 eukaryotic translation initiation factor 3 subunit F, putative, expressed K03249: translation initiation factor 3 subunit F
10 Sobic.006G109700 UBA and UBX domain-containing protein, putative, expressed K14012: SHP1, UBX1, UBX domain-containing protein 1
11 Sobic.003G330500 peptidase, T1 family, putative, expressed -
12 Sobic.001G096100 DNA-binding protein-related, putative, expressed K07466: RFA1, RPA1, replication factor A1
13 Sobic.001G010700 proteasome subunit, putative, expressed K03035: PSMD12, 26S proteasome regulatory subunit N5
14 Sobic.001G481700 eukaryotic translation initiation factor 3 subunit K, putative, expressed K15028: translation initiation factor 3 subunit K
15 Sobic.001G458700 26S protease regulatory subunit 6B, putative, expressed K03063: PSMC4, 26S proteasome regulatory subunit T3
16 Sobic.001G281900 miro, putative, expressed K07977: Arf/Sar family, other
17 Sobic.003G043400 syntaxin, putative, expressed K08490: syntaxin 5
18 Sobic.006G231500 acetyltransferase, GNAT family, putative, expressed K00670: NAA30, N-alpha-acetyltransferase 30
19 Sobic.007G076300 26S proteasome non-ATPase regulatory subunit 8, putative, expressed K03031: PSMD8, 26S proteasome regulatory subunit N12
20 Sobic.004G224900 peptidase, T1 family, putative, expressed K02726: 20S proteasome subunit alpha 2


Gene co-expression network
sample Sobic006G211800 Sobic006G211800 Sobic002G428200 Sobic002G428200 Sobic006G211800--Sobic002G428200 Sobic007G176200 Sobic007G176200 Sobic006G211800--Sobic007G176200 Sobic002G423800 Sobic002G423800 Sobic006G211800--Sobic002G423800 Sobic006G252200 Sobic006G252200 Sobic006G211800--Sobic006G252200 Sobic005G105500 Sobic005G105500 Sobic006G211800--Sobic005G105500 Sobic009G234400 Sobic009G234400 Sobic006G211800--Sobic009G234400 Sobic001G444300 Sobic001G444300 Sobic006G211800--Sobic001G444300 Sobic001G404100 Sobic001G404100 Sobic006G211800--Sobic001G404100 Sobic009G212300 Sobic009G212300 Sobic006G211800--Sobic009G212300 Sobic004G335000 Sobic004G335000 Sobic002G428200--Sobic004G335000 Sobic002G428200--Sobic007G176200 Sobic002G428200--Sobic006G211800 Sobic004G224900 Sobic004G224900 Sobic002G428200--Sobic004G224900 Sobic002G428200--Sobic006G252200 Sobic001G502200 Sobic001G502200 Sobic002G428200--Sobic001G502200 Sobic008G137600 Sobic008G137600 Sobic002G428200--Sobic008G137600 Sobic001G010700 Sobic001G010700 Sobic002G428200--Sobic001G010700 Sobic003G104700 Sobic003G104700 Sobic002G428200--Sobic003G104700 Sobic001G458700 Sobic001G458700 Sobic007G176200--Sobic001G458700 Sobic007G176200--Sobic001G010700 Sobic007G176200--Sobic006G252200 Sobic003G330500 Sobic003G330500 Sobic007G176200--Sobic003G330500 Sobic007G176200--Sobic004G224900 Sobic007G176200--Sobic002G428200 Sobic007G176200--Sobic004G335000 Sobic002G341800 Sobic002G341800 Sobic007G176200--Sobic002G341800 Sobic009G067000 Sobic009G067000 Sobic007G176200--Sobic009G067000 Sobic003G043400 Sobic003G043400 Sobic002G423800--Sobic003G043400 Sobic002G423800--Sobic006G211800 Sobic002G423800--Sobic001G010700 Sobic002G423800--Sobic001G444300 Sobic002G423800--Sobic002G428200 Sobic001G542900 Sobic001G542900 Sobic002G423800--Sobic001G542900 Sobic002G423800--Sobic006G252200 Sobic008G145100 Sobic008G145100 Sobic002G423800--Sobic008G145100 Sobic002G423800--Sobic007G176200 Sobic006G252200--Sobic007G176200 Sobic006G252200--Sobic001G458700 Sobic006G252200--Sobic004G224900 Sobic006G252200--Sobic001G010700 Sobic006G252200--Sobic003G330500 Sobic006G252200--Sobic002G428200 Sobic004G138800 Sobic004G138800 Sobic006G252200--Sobic004G138800 Sobic001G283200 Sobic001G283200 Sobic006G252200--Sobic001G283200 Sobic001G096100 Sobic001G096100 Sobic006G252200--Sobic001G096100 Sobic001G281900 Sobic001G281900 Sobic005G105500--Sobic001G281900 Sobic005G105500--Sobic001G458700 Sobic005G105500--Sobic002G341800 Sobic001G145500 Sobic001G145500 Sobic005G105500--Sobic001G145500 Sobic005G105500--Sobic001G096100 Sobic005G105500--Sobic006G211800 Sobic005G105500--Sobic007G176200 Sobic005G105500--Sobic003G330500 Sobic006G002201 Sobic006G002201 Sobic005G105500--Sobic006G002201 Sobic009G234400--Sobic009G212300 Sobic009G234400--Sobic006G211800 Sobic009G234400--Sobic002G341800 Sobic009G234400--Sobic001G404100 Sobic009G234400--Sobic005G105500 Sobic003G028100 Sobic003G028100 Sobic009G234400--Sobic003G028100 Sobic001G481700 Sobic001G481700 Sobic009G234400--Sobic001G481700 Sobic006G231500 Sobic006G231500 Sobic009G234400--Sobic006G231500 Sobic002G087000 Sobic002G087000 Sobic009G234400--Sobic002G087000 Sobic001G444300--Sobic001G145500 Sobic006G109700 Sobic006G109700 Sobic001G444300--Sobic006G109700 Sobic001G444300--Sobic002G423800 Sobic001G444300--Sobic006G211800 Sobic001G444300--Sobic007G176200 Sobic001G444300--Sobic006G252200 Sobic001G444300--Sobic002G428200 Sobic001G444300--Sobic003G104700 Sobic004G348900 Sobic004G348900 Sobic001G444300--Sobic004G348900 Sobic001G404100--Sobic002G341800 Sobic001G404100--Sobic001G481700 Sobic001G404100--Sobic001G502200 Sobic001G404100--Sobic008G137600 Sobic009G104000 Sobic009G104000 Sobic001G404100--Sobic009G104000 Sobic001G404100--Sobic001G096100 Sobic001G404100--Sobic002G428200 Sobic001G404100--Sobic009G212300 Sobic001G404100--Sobic006G252200 Sobic009G212300--Sobic009G234400 Sobic003G196800 Sobic003G196800 Sobic009G212300--Sobic003G196800 Sobic009G212300--Sobic001G096100 Sobic009G212300--Sobic006G231500 Sobic003G308000 Sobic003G308000 Sobic009G212300--Sobic003G308000 Sobic009G212300--Sobic001G404100 Sobic007G217400 Sobic007G217400 Sobic009G212300--Sobic007G217400 Sobic009G212300--Sobic001G481700 Sobic009G212300--Sobic006G211800
Octagon: transcription factors


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