Gene annotation
Transcriptome id Sobic.001G404100.1
Synonym Sb01g038230
Functional annotation expressed protein
UniProt C5WNG8
Pfam PF00575 PF07541
Panther DB PTHR10602 PTHR10602:SF0
NCBI CDD KOG2916; Translation initiation factor 2, alpha subunit (eIF-2alpha)
KEGG Orthology K03237; translation initiation factor 2 subunit 1
Gene Ontology GO:0003676; nucleic acid binding GO:0005850eukaryotic translation initiation factor 2 complex GO:0003743translation initiation factor activity GO:0003723RNA binding


Orthologs (automatic annotation)
TAIR AT2G40290 : Eukaryotic translation initiation factor 2 subunit 1
RAP-DB (Rice) LOC_Os03g18510.1 : expressed protein
MaizeGDB (Corn) Zm00025a052634 , Zm00025a002034
Brachypodium KQK22100 , PNT77569 , KQK14500
Barley HORVU2Hr1G014580.1 , HORVU2Hr1G014580.2 , HORVU2Hr1G014580.3 , HORVU2Hr1G014580.4 , HORVU2Hr1G014580.5 , HORVU2Hr1G014580.6 , HORVU4Hr1G055500.1 , HORVU4Hr1G055500.3 , HORVU4Hr1G055500.2
Wheat TraesCS4B02G190900 , TraesCS2D02G087300 , TraesCS4D02G192100 , TraesCS4A02G113300 , TraesCS2B02G105000
Populus -


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cDNA sequences
Sobic.001G404100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G341800 eukaryotic translation initiation factor 2 subunit gamma, putative, expressed K03242: translation initiation factor 2 subunit 3
2 Sobic.001G481700 eukaryotic translation initiation factor 3 subunit K, putative, expressed K15028: translation initiation factor 3 subunit K
3 Sobic.001G502200 peptidase, T1 family, putative, expressed K02729: 20S proteasome subunit alpha 5
4 Sobic.008G137600 RNA recognition motif containing protein, expressed K12900: FUS-interacting serine-arginine-rich protein 1
5 Sobic.009G104000 ranBP1 domain containing protein, expressed K15306: Ran-binding protein 1
6 Sobic.001G096100 DNA-binding protein-related, putative, expressed K07466: RFA1, RPA1, replication factor A1
7 Sobic.002G428200 26S protease regulatory subunit 4, putative, expressed K03062: PSMC1, 26S proteasome regulatory subunit T2
8 Sobic.009G212300 eukaryotic translation initiation factor 3 subunit F, putative, expressed K03249: translation initiation factor 3 subunit F
9 Sobic.006G252200 MEE34, putative, expressed K03038: PSMD7, 26S proteasome regulatory subunit N8
10 Sobic.009G234400 eukaryotic translation initiation factor 3 subunit D, putative, expressed K03251: translation initiation factor 3 subunit D
11 Sobic.009G130400 DNA-directed RNA polymerase II subunit RPB7, putative, expressed K03015: RPB7, DNA-directed RNA polymerase II subunit RPB7
12 Sobic.004G348900 expressed protein -
13 Sobic.006G211800 coatomer subunit epsilon, putative, expressed K17268: coatomer subunit epsilon
14 Sobic.007G152400 eukaryotic translation initiation factor 6, putative, expressed K03264: translation initiation factor 6
15 Sobic.001G025600 huntingtin-interacting protein HYPK, putative, expressed -
16 Sobic.003G367900 LSM domain containing protein, expressed K12622: U6 snRNA-associated Sm-like protein LSm3
17 Sobic.005G105500 expressed protein -
18 Sobic.003G104700 Rer1 protein, putative, expressed -
19 Sobic.010G038700 expressed protein -
20 Sobic.001G458700 26S protease regulatory subunit 6B, putative, expressed K03063: PSMC4, 26S proteasome regulatory subunit T3


Gene co-expression network
sample Sobic001G404100 Sobic001G404100 Sobic002G341800 Sobic002G341800 Sobic001G404100--Sobic002G341800 Sobic001G481700 Sobic001G481700 Sobic001G404100--Sobic001G481700 Sobic001G502200 Sobic001G502200 Sobic001G404100--Sobic001G502200 Sobic008G137600 Sobic008G137600 Sobic001G404100--Sobic008G137600 Sobic009G104000 Sobic009G104000 Sobic001G404100--Sobic009G104000 Sobic001G096100 Sobic001G096100 Sobic001G404100--Sobic001G096100 Sobic002G428200 Sobic002G428200 Sobic001G404100--Sobic002G428200 Sobic009G212300 Sobic009G212300 Sobic001G404100--Sobic009G212300 Sobic006G252200 Sobic006G252200 Sobic001G404100--Sobic006G252200 Sobic001G458700 Sobic001G458700 Sobic002G341800--Sobic001G458700 Sobic002G341800--Sobic001G404100 Sobic002G341800--Sobic001G481700 Sobic007G176200 Sobic007G176200 Sobic002G341800--Sobic007G176200 Sobic006G044600 Sobic006G044600 Sobic002G341800--Sobic006G044600 Sobic002G394600 Sobic002G394600 Sobic002G341800--Sobic002G394600 Sobic005G105500 Sobic005G105500 Sobic002G341800--Sobic005G105500 Sobic002G341800--Sobic008G137600 Sobic004G081800 Sobic004G081800 Sobic002G341800--Sobic004G081800 Sobic001G025600 Sobic001G025600 Sobic001G481700--Sobic001G025600 Sobic004G224900 Sobic004G224900 Sobic001G481700--Sobic004G224900 Sobic010G100000 Sobic010G100000 Sobic001G481700--Sobic010G100000 Sobic001G481700--Sobic002G341800 Sobic001G481700--Sobic001G404100 Sobic007G220900 Sobic007G220900 Sobic001G481700--Sobic007G220900 Sobic009G104100 Sobic009G104100 Sobic001G481700--Sobic009G104100 Sobic001G481700--Sobic001G458700 Sobic001G481700--Sobic007G176200 Sobic001G315500 Sobic001G315500 Sobic001G502200--Sobic001G315500 Sobic007G168600 Sobic007G168600 Sobic001G502200--Sobic007G168600 Sobic001G502200--Sobic004G224900 Sobic003G124800 Sobic003G124800 Sobic001G502200--Sobic003G124800 Sobic001G502200--Sobic001G458700 Sobic003G330500 Sobic003G330500 Sobic001G502200--Sobic003G330500 Sobic001G502200--Sobic002G428200 Sobic002G078400 Sobic002G078400 Sobic001G502200--Sobic002G078400 Sobic001G502200--Sobic006G252200 Sobic001G532100 Sobic001G532100 Sobic008G137600--Sobic001G532100 Sobic001G402300 Sobic001G402300 Sobic008G137600--Sobic001G402300 Sobic001G294900 Sobic001G294900 Sobic008G137600--Sobic001G294900 Sobic008G137600--Sobic002G428200 Sobic003G273400 Sobic003G273400 Sobic008G137600--Sobic003G273400 Sobic006G109700 Sobic006G109700 Sobic008G137600--Sobic006G109700 Sobic008G137600--Sobic002G341800 Sobic008G137600--Sobic001G404100 Sobic008G137600--Sobic001G502200 Sobic009G104000--Sobic001G404100 Sobic010G008100 Sobic010G008100 Sobic009G104000--Sobic010G008100 Sobic010G038700 Sobic010G038700 Sobic009G104000--Sobic010G038700 Sobic001G440700 Sobic001G440700 Sobic009G104000--Sobic001G440700 Sobic009G104000--Sobic001G502200 Sobic007G132700 Sobic007G132700 Sobic009G104000--Sobic007G132700 Sobic001G067900 Sobic001G067900 Sobic009G104000--Sobic001G067900 Sobic010G062800 Sobic010G062800 Sobic009G104000--Sobic010G062800 Sobic009G179200 Sobic009G179200 Sobic009G104000--Sobic009G179200 Sobic004G066800 Sobic004G066800 Sobic001G096100--Sobic004G066800 Sobic004G138800 Sobic004G138800 Sobic001G096100--Sobic004G138800 Sobic001G096100--Sobic003G330500 Sobic001G096100--Sobic006G252200 Sobic001G096100--Sobic004G224900 Sobic002G255100 Sobic002G255100 Sobic001G096100--Sobic002G255100 Sobic001G096100--Sobic001G481700 Sobic003G196800 Sobic003G196800 Sobic001G096100--Sobic003G196800 Sobic001G096100--Sobic010G038700 Sobic004G335000 Sobic004G335000 Sobic002G428200--Sobic004G335000 Sobic002G428200--Sobic007G176200 Sobic006G211800 Sobic006G211800 Sobic002G428200--Sobic006G211800 Sobic002G428200--Sobic004G224900 Sobic002G428200--Sobic006G252200 Sobic002G428200--Sobic001G502200 Sobic002G428200--Sobic008G137600 Sobic001G010700 Sobic001G010700 Sobic002G428200--Sobic001G010700 Sobic003G104700 Sobic003G104700 Sobic002G428200--Sobic003G104700 Sobic009G234400 Sobic009G234400 Sobic009G212300--Sobic009G234400 Sobic009G212300--Sobic003G196800 Sobic009G212300--Sobic001G096100 Sobic006G231500 Sobic006G231500 Sobic009G212300--Sobic006G231500 Sobic003G308000 Sobic003G308000 Sobic009G212300--Sobic003G308000 Sobic009G212300--Sobic001G404100 Sobic007G217400 Sobic007G217400 Sobic009G212300--Sobic007G217400 Sobic009G212300--Sobic001G481700 Sobic009G212300--Sobic006G211800 Sobic006G252200--Sobic007G176200 Sobic006G252200--Sobic001G458700 Sobic006G252200--Sobic004G224900 Sobic006G252200--Sobic001G010700 Sobic006G252200--Sobic003G330500 Sobic006G252200--Sobic002G428200 Sobic006G252200--Sobic004G138800 Sobic001G283200 Sobic001G283200 Sobic006G252200--Sobic001G283200 Sobic006G252200--Sobic001G096100
Octagon: transcription factors


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