Gene annotation
Transcriptome id Sobic.009G104000.1
Synonym Sb09g016600
Functional annotation ranBP1 domain containing protein, expressed
UniProt C5YWC4
Pfam PF00638
Panther DB PTHR23138 PTHR23138:SF95
NCBI CDD KOG0864; Ran-binding protein RANBP1 and related RanBD domain proteins
KEGG Orthology K15306; Ran-binding protein 1
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G58590 : RAN binding protein 1
RAP-DB (Rice) LOC_Os05g28290.1 : ranBP1 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a043446 , Zm00025a037661
Brachypodium KQK06787
Barley HORVU1Hr1G059970.3 , HORVU1Hr1G059970.2
Wheat TraesCS1B02G237100 , TraesCS1A02G223800 , TraesCS1D02G225400
Populus -


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cDNA sequences
Sobic.009G104000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G404100 expressed protein K03237: translation initiation factor 2 subunit 1
2 Sobic.010G008100 RNA recognition motif containing protein, putative, expressed -
3 Sobic.010G038700 expressed protein -
4 Sobic.001G440700 ribosomal protein L7Ae, putative, expressed K12845: SNU13, U4/U6 small nuclear ribonucleoprotein SNU13
5 Sobic.001G502200 peptidase, T1 family, putative, expressed K02729: 20S proteasome subunit alpha 5
6 Sobic.007G132700 tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@ZIM motif family protein, expressed K13464: jasmonate ZIM domain-containing protein
7 Sobic.001G067900 clathrin adaptor complex small chain domain containing protein, expressed K12394: AP-1 complex subunit sigma 1/2
8 Sobic.010G062800 transporter, major facilitator family, putative, expressed K13783: MFS transporter, OPA family, solute carrier family 37 (glycerol-3-phosphate transporter), member 1/2
9 Sobic.009G179200 endoplasmic reticulum-Golgi intermediate compartment protein 3, putative, expressed -
10 Sobic.001G007600 GTPase-activating protein, putative, expressed K12493: ADP-ribosylation factor GTPase-activating protein 2/3
11 Sobic.009G168000 selT-like protein precursor, putative, expressed -
12 Sobic.010G205300 secreted salivary protein, putative, expressed -
13 Sobic.008G016900 glucosamine--fructose-6-phosphate aminotransferase 1, putative, expressed K00820: glmS, glutamine---fructose-6-phosphate transaminase (isomerizing)
14 Sobic.002G341800 eukaryotic translation initiation factor 2 subunit gamma, putative, expressed K03242: translation initiation factor 2 subunit 3
15 Sobic.006G257001 - -
16 Sobic.002G078400 ADP-ribosylation factor, putative, expressed K07937: ADP-ribosylation factor 1/2
K07977: Arf/Sar family, other
17 Sobic.005G157200 prefoldin subunit, putative, expressed K09549: prefoldin subunit 2
18 Sobic.004G060600 expressed protein K13105: proline-rich protein PRCC
19 Sobic.001G230100 3-ketoacyl-CoA thiolase, peroxisomal precursor, putative, expressed K07513: acetyl-CoA acyltransferase 1
20 Sobic.008G058300 RNA polymerases N 8 kDa subunit, putative, expressed K03007: RPB10, DNA-directed RNA polymerases I, II, and III subunit RPABC5


Gene co-expression network
sample Sobic009G104000 Sobic009G104000 Sobic001G404100 Sobic001G404100 Sobic009G104000--Sobic001G404100 Sobic010G008100 Sobic010G008100 Sobic009G104000--Sobic010G008100 Sobic010G038700 Sobic010G038700 Sobic009G104000--Sobic010G038700 Sobic001G440700 Sobic001G440700 Sobic009G104000--Sobic001G440700 Sobic001G502200 Sobic001G502200 Sobic009G104000--Sobic001G502200 Sobic007G132700 Sobic007G132700 Sobic009G104000--Sobic007G132700 Sobic001G067900 Sobic001G067900 Sobic009G104000--Sobic001G067900 Sobic010G062800 Sobic010G062800 Sobic009G104000--Sobic010G062800 Sobic009G179200 Sobic009G179200 Sobic009G104000--Sobic009G179200 Sobic002G341800 Sobic002G341800 Sobic001G404100--Sobic002G341800 Sobic001G481700 Sobic001G481700 Sobic001G404100--Sobic001G481700 Sobic001G404100--Sobic001G502200 Sobic008G137600 Sobic008G137600 Sobic001G404100--Sobic008G137600 Sobic001G404100--Sobic009G104000 Sobic001G096100 Sobic001G096100 Sobic001G404100--Sobic001G096100 Sobic002G428200 Sobic002G428200 Sobic001G404100--Sobic002G428200 Sobic009G212300 Sobic009G212300 Sobic001G404100--Sobic009G212300 Sobic006G252200 Sobic006G252200 Sobic001G404100--Sobic006G252200 Sobic001G403700 Sobic001G403700 Sobic010G008100--Sobic001G403700 Sobic009G008600 Sobic009G008600 Sobic010G008100--Sobic009G008600 Sobic008G132800 Sobic008G132800 Sobic010G008100--Sobic008G132800 Sobic010G008100--Sobic009G104000 Sobic003G424800 Sobic003G424800 Sobic010G008100--Sobic003G424800 Sobic010G213400 Sobic010G213400 Sobic010G008100--Sobic010G213400 Sobic002G078400 Sobic002G078400 Sobic010G008100--Sobic002G078400 Sobic001G331900 Sobic001G331900 Sobic010G008100--Sobic001G331900 Sobic005G157200 Sobic005G157200 Sobic010G008100--Sobic005G157200 Sobic010G038700--Sobic001G096100 Sobic009G045800 Sobic009G045800 Sobic010G038700--Sobic009G045800 Sobic001G018200 Sobic001G018200 Sobic010G038700--Sobic001G018200 Sobic003G330500 Sobic003G330500 Sobic010G038700--Sobic003G330500 Sobic004G262300 Sobic004G262300 Sobic010G038700--Sobic004G262300 Sobic010G038700--Sobic001G481700 Sobic008G127500 Sobic008G127500 Sobic010G038700--Sobic008G127500 Sobic009G168000 Sobic009G168000 Sobic010G038700--Sobic009G168000 Sobic001G025600 Sobic001G025600 Sobic010G038700--Sobic001G025600 Sobic010G101500 Sobic010G101500 Sobic001G440700--Sobic010G101500 Sobic001G415000 Sobic001G415000 Sobic001G440700--Sobic001G415000 Sobic004G020000 Sobic004G020000 Sobic001G440700--Sobic004G020000 Sobic001G040800 Sobic001G040800 Sobic001G440700--Sobic001G040800 Sobic004G321900 Sobic004G321900 Sobic001G440700--Sobic004G321900 Sobic004G061800 Sobic004G061800 Sobic001G440700--Sobic004G061800 Sobic003G248600 Sobic003G248600 Sobic001G440700--Sobic003G248600 Sobic001G440700--Sobic009G104000 Sobic001G283500 Sobic001G283500 Sobic001G440700--Sobic001G283500 Sobic001G315500 Sobic001G315500 Sobic001G502200--Sobic001G315500 Sobic007G168600 Sobic007G168600 Sobic001G502200--Sobic007G168600 Sobic004G224900 Sobic004G224900 Sobic001G502200--Sobic004G224900 Sobic003G124800 Sobic003G124800 Sobic001G502200--Sobic003G124800 Sobic001G458700 Sobic001G458700 Sobic001G502200--Sobic001G458700 Sobic001G502200--Sobic003G330500 Sobic001G502200--Sobic002G428200 Sobic001G502200--Sobic002G078400 Sobic001G502200--Sobic006G252200 Sobic007G132700--Sobic009G179200 Sobic007G132700--Sobic009G104000 Sobic001G162100 Sobic001G162100 Sobic007G132700--Sobic001G162100 Sobic007G132700--Sobic010G062800 Sobic010G188100 Sobic010G188100 Sobic007G132700--Sobic010G188100 Sobic004G253900 Sobic004G253900 Sobic007G132700--Sobic004G253900 Sobic008G016900 Sobic008G016900 Sobic007G132700--Sobic008G016900 Sobic001G012800 Sobic001G012800 Sobic007G132700--Sobic001G012800 Sobic009G219900 Sobic009G219900 Sobic007G132700--Sobic009G219900 Sobic001G105100 Sobic001G105100 Sobic001G067900--Sobic001G105100 Sobic004G072800 Sobic004G072800 Sobic001G067900--Sobic004G072800 Sobic006G257001 Sobic006G257001 Sobic001G067900--Sobic006G257001 Sobic002G281300 Sobic002G281300 Sobic001G067900--Sobic002G281300 Sobic003G217100 Sobic003G217100 Sobic001G067900--Sobic003G217100 Sobic006G034800 Sobic006G034800 Sobic001G067900--Sobic006G034800 Sobic006G250900 Sobic006G250900 Sobic001G067900--Sobic006G250900 Sobic010G205300 Sobic010G205300 Sobic001G067900--Sobic010G205300 Sobic001G237500 Sobic001G237500 Sobic001G067900--Sobic001G237500 Sobic010G062800--Sobic008G016900 Sobic007G188100 Sobic007G188100 Sobic010G062800--Sobic007G188100 Sobic010G062800--Sobic001G403700 Sobic006G192500 Sobic006G192500 Sobic010G062800--Sobic006G192500 Sobic010G228000 Sobic010G228000 Sobic010G062800--Sobic010G228000 Sobic010G062800--Sobic001G283500 Sobic002G214900 Sobic002G214900 Sobic010G062800--Sobic002G214900 Sobic004G145200 Sobic004G145200 Sobic010G062800--Sobic004G145200 Sobic006G182100 Sobic006G182100 Sobic010G062800--Sobic006G182100 Sobic001G049200 Sobic001G049200 Sobic009G179200--Sobic001G049200 Sobic002G294200 Sobic002G294200 Sobic009G179200--Sobic002G294200 Sobic009G179200--Sobic001G403700 Sobic003G261400 Sobic003G261400 Sobic009G179200--Sobic003G261400 Sobic002G242500 Sobic002G242500 Sobic009G179200--Sobic002G242500 Sobic004G130900 Sobic004G130900 Sobic009G179200--Sobic004G130900 Sobic009G179200--Sobic007G132700 Sobic001G078800 Sobic001G078800 Sobic009G179200--Sobic001G078800 Sobic009G179200--Sobic010G062800
Octagon: transcription factors


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