Gene annotation
Transcriptome id Sobic.010G008100.1
Synonym Sb10g000940
Functional annotation RNA recognition motif containing protein, putative, expressed
UniProt C5Z2Q0
Pfam PF14259
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G17720 : RNA-binding (RRM/RBD/RNP motifs) family protein
RAP-DB (Rice) LOC_Os06g02240.1 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a041181 , Zm00025a050282
Brachypodium KQK19994
Barley HORVU7Hr1G003710.4 , HORVU7Hr1G003710.1 , HORVU7Hr1G003710.2 , HORVU7Hr1G003710.3
Wheat TraesCS7D02G027100 , TraesCS7A02G030900 , TraesCS7A02G030900 , TraesCS7A02G030900 , TraesCS4A02G458600
Populus -


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cDNA sequences
Sobic.010G008100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G403700 mitochondrial carrier protein, putative, expressed K15113: SLC25A28_37, solute carrier family 25 (mitochondrial iron transporter), member 28/37
2 Sobic.009G008600 REX1 DNA Repair family protein, expressed K10845: TTDA, GTF2H5, TFIIH basal transcription factor complex TTD-A subunit
3 Sobic.008G132800 expressed protein -
4 Sobic.009G104000 ranBP1 domain containing protein, expressed K15306: Ran-binding protein 1
5 Sobic.003G424800 MKI67 FHA domain-interacting nucleolar phosphoprotein(PubMedID : 24906815)@RNA recognition motif containing protein, putative, expressed K14838: nucleolar protein 15
6 Sobic.010G213400 protein transport protein SEC61 subunit gamma, putative, expressed K07342: SEC61G, SSS1, protein transport protein SEC61 subunit gamma and related proteins
7 Sobic.002G078400 ADP-ribosylation factor, putative, expressed K07937: ADP-ribosylation factor 1/2
K07977: Arf/Sar family, other
8 Sobic.001G331900 expressed protein -
9 Sobic.005G157200 prefoldin subunit, putative, expressed K09549: prefoldin subunit 2
10 Sobic.006G150600 hydrolase, putative, expressed K14664: IAA-amino acid hydrolase
11 Sobic.005G092800 expressed protein -
12 Sobic.003G127700 split hand/foot malformation type 1, putative, expressed K10881: SHFM1, DSS1, 26 proteasome complex subunit DSS1
13 Sobic.010G163600 ras-related protein, putative, expressed K07904: Ras-related protein Rab-11A
14 Sobic.001G283500 VHS and GAT domain containing protein, expressed -
15 Sobic.001G090000 expressed protein -
16 Sobic.003G130600 MazG nucleotide pyrophosphohydrolase domain containing protein, expressed K11755: phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphohydrolase
17 Sobic.004G339200 CK1_CaseinKinase_1.6 - CK1 includes the casein kinase 1 kinases, expressed -
18 Sobic.003G362400 G10 protein, putative, expressed K12873: BUD31, bud site selection protein 31
19 Sobic.004G300900 OsGrx_C3 - glutaredoxin subgroup I, expressed K03676: grxC, GLRX, glutaredoxin 3
20 Sobic.001G404100 expressed protein K03237: translation initiation factor 2 subunit 1


Gene co-expression network
sample Sobic010G008100 Sobic010G008100 Sobic001G403700 Sobic001G403700 Sobic010G008100--Sobic001G403700 Sobic009G008600 Sobic009G008600 Sobic010G008100--Sobic009G008600 Sobic008G132800 Sobic008G132800 Sobic010G008100--Sobic008G132800 Sobic009G104000 Sobic009G104000 Sobic010G008100--Sobic009G104000 Sobic003G424800 Sobic003G424800 Sobic010G008100--Sobic003G424800 Sobic010G213400 Sobic010G213400 Sobic010G008100--Sobic010G213400 Sobic002G078400 Sobic002G078400 Sobic010G008100--Sobic002G078400 Sobic001G331900 Sobic001G331900 Sobic010G008100--Sobic001G331900 Sobic005G157200 Sobic005G157200 Sobic010G008100--Sobic005G157200 Sobic009G111600 Sobic009G111600 Sobic001G403700--Sobic009G111600 Sobic004G284500 Sobic004G284500 Sobic001G403700--Sobic004G284500 Sobic001G403700--Sobic002G078400 Sobic006G182100 Sobic006G182100 Sobic001G403700--Sobic006G182100 Sobic002G296300 Sobic002G296300 Sobic001G403700--Sobic002G296300 Sobic003G248600 Sobic003G248600 Sobic001G403700--Sobic003G248600 Sobic001G403700--Sobic008G132800 Sobic002G214900 Sobic002G214900 Sobic001G403700--Sobic002G214900 Sobic001G403700--Sobic010G213400 Sobic009G008600--Sobic005G157200 Sobic009G008600--Sobic010G213400 Sobic009G008600--Sobic001G331900 Sobic009G008600--Sobic008G132800 Sobic001G529000 Sobic001G529000 Sobic009G008600--Sobic001G529000 Sobic003G362400 Sobic003G362400 Sobic009G008600--Sobic003G362400 Sobic006G222400 Sobic006G222400 Sobic009G008600--Sobic006G222400 Sobic002G263800 Sobic002G263800 Sobic009G008600--Sobic002G263800 Sobic009G008600--Sobic010G008100 Sobic010G029400 Sobic010G029400 Sobic008G132800--Sobic010G029400 Sobic008G132800--Sobic002G078400 Sobic009G016201 Sobic009G016201 Sobic008G132800--Sobic009G016201 Sobic008G132800--Sobic001G331900 Sobic004G066800 Sobic004G066800 Sobic008G132800--Sobic004G066800 Sobic001G105100 Sobic001G105100 Sobic008G132800--Sobic001G105100 Sobic008G132800--Sobic005G157200 Sobic010G065400 Sobic010G065400 Sobic008G132800--Sobic010G065400 Sobic003G217100 Sobic003G217100 Sobic008G132800--Sobic003G217100 Sobic001G404100 Sobic001G404100 Sobic009G104000--Sobic001G404100 Sobic009G104000--Sobic010G008100 Sobic010G038700 Sobic010G038700 Sobic009G104000--Sobic010G038700 Sobic001G440700 Sobic001G440700 Sobic009G104000--Sobic001G440700 Sobic001G502200 Sobic001G502200 Sobic009G104000--Sobic001G502200 Sobic007G132700 Sobic007G132700 Sobic009G104000--Sobic007G132700 Sobic001G067900 Sobic001G067900 Sobic009G104000--Sobic001G067900 Sobic010G062800 Sobic010G062800 Sobic009G104000--Sobic010G062800 Sobic009G179200 Sobic009G179200 Sobic009G104000--Sobic009G179200 Sobic001G117400 Sobic001G117400 Sobic003G424800--Sobic001G117400 Sobic002G116200 Sobic002G116200 Sobic003G424800--Sobic002G116200 Sobic002G413400 Sobic002G413400 Sobic003G424800--Sobic002G413400 Sobic001G147100 Sobic001G147100 Sobic003G424800--Sobic001G147100 Sobic003G424800--Sobic003G362400 Sobic003G424800--Sobic001G529000 Sobic003G424800--Sobic010G008100 Sobic003G424800--Sobic009G008600 Sobic003G424800--Sobic001G331900 Sobic003G368500 Sobic003G368500 Sobic010G213400--Sobic003G368500 Sobic003G249800 Sobic003G249800 Sobic010G213400--Sobic003G249800 Sobic009G033700 Sobic009G033700 Sobic010G213400--Sobic009G033700 Sobic010G213400--Sobic004G284500 Sobic010G163600 Sobic010G163600 Sobic010G213400--Sobic010G163600 Sobic001G224400 Sobic001G224400 Sobic010G213400--Sobic001G224400 Sobic006G062800 Sobic006G062800 Sobic010G213400--Sobic006G062800 Sobic001G445800 Sobic001G445800 Sobic010G213400--Sobic001G445800 Sobic010G153100 Sobic010G153100 Sobic010G213400--Sobic010G153100 Sobic004G300900 Sobic004G300900 Sobic002G078400--Sobic004G300900 Sobic002G078400--Sobic010G065400 Sobic002G078400--Sobic003G362400 Sobic007G091000 Sobic007G091000 Sobic002G078400--Sobic007G091000 Sobic002G078400--Sobic008G132800 Sobic002G078400--Sobic001G445800 Sobic002G078400--Sobic001G331900 Sobic009G198500 Sobic009G198500 Sobic002G078400--Sobic009G198500 Sobic002G078400--Sobic010G029400 Sobic004G107600 Sobic004G107600 Sobic001G331900--Sobic004G107600 Sobic001G331900--Sobic005G157200 Sobic008G058300 Sobic008G058300 Sobic001G331900--Sobic008G058300 Sobic001G331900--Sobic002G078400 Sobic001G331900--Sobic008G132800 Sobic001G331900--Sobic004G300900 Sobic001G377800 Sobic001G377800 Sobic001G331900--Sobic001G377800 Sobic001G331900--Sobic003G362400 Sobic001G331900--Sobic001G529000 Sobic005G157200--Sobic008G058300 Sobic005G157200--Sobic001G331900 Sobic005G157200--Sobic001G377800 Sobic003G025200 Sobic003G025200 Sobic005G157200--Sobic003G025200 Sobic002G406500 Sobic002G406500 Sobic005G157200--Sobic002G406500 Sobic007G163700 Sobic007G163700 Sobic005G157200--Sobic007G163700 Sobic005G157200--Sobic010G029400 Sobic005G157200--Sobic004G107600 Sobic005G157200--Sobic001G529000
Octagon: transcription factors


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