Gene annotation
Transcriptome id Sobic.003G127700.1
Synonym Sb03g010810
Functional annotation split hand/foot malformation type 1, putative, expressed
UniProt C5XGM8
Pfam PF05160
Panther DB PTHR16771 PTHR16771:SF2
NCBI CDD -
KEGG Orthology K10881; SHFM1, DSS1, 26 proteasome complex subunit DSS1
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G64750 : deletion of SUV3 suppressor 1(I)
RAP-DB (Rice) LOC_Os01g16640.1 : split hand/foot malformation type 1, putative, expressed
MaizeGDB (Corn) Zm00025a035238
Brachypodium KQK03853
Barley HORVU3Hr1G038460.1 , HORVU3Hr1G038460.2
Wheat TraesCS3D02G190500 , TraesCS3A02G186600 , TraesCS3B02G216100
Populus -


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cDNA sequences
Sobic.003G127700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G378401 - -
2 Sobic.002G116200 adenylate kinase isoenzyme 6, putative, expressed K18532: AK6, adenylate kinase
3 Sobic.003G367900 LSM domain containing protein, expressed K12622: U6 snRNA-associated Sm-like protein LSm3
4 Sobic.010G210000 ubiquitin family protein, putative, expressed K12158: ubiquitin-like protein Nedd8
5 Sobic.007G068000 postsynaptic protein CRIPT, putative, expressed -
6 Sobic.009G258600 LSM domain containing protein, expressed K12627: U6 snRNA-associated Sm-like protein LSm8
7 Sobic.010G008100 RNA recognition motif containing protein, putative, expressed -
8 Sobic.002G280200 Skp1 family, dimerisation domain containing protein, expressed K03094: SKP1, S-phase kinase-associated protein 1
9 Sobic.009G050200 expressed protein K15141: mediator of RNA polymerase II transcription subunit 28
10 Sobic.001G331900 expressed protein -
11 Sobic.001G501200 ras-related protein, putative, expressed K07889: Ras-related protein Rab-5C
12 Sobic.001G096100 DNA-binding protein-related, putative, expressed K07466: RFA1, RPA1, replication factor A1
13 Sobic.010G213400 protein transport protein SEC61 subunit gamma, putative, expressed K07342: SEC61G, SSS1, protein transport protein SEC61 subunit gamma and related proteins
14 Sobic.003G424800 MKI67 FHA domain-interacting nucleolar phosphoprotein(PubMedID : 24906815)@RNA recognition motif containing protein, putative, expressed K14838: nucleolar protein 15
15 Sobic.004G026400 expressed protein -
16 Sobic.005G157200 prefoldin subunit, putative, expressed K09549: prefoldin subunit 2
17 Sobic.009G094450 - -
18 Sobic.008G058300 RNA polymerases N 8 kDa subunit, putative, expressed K03007: RPB10, DNA-directed RNA polymerases I, II, and III subunit RPABC5
19 Sobic.003G104700 Rer1 protein, putative, expressed -
20 Sobic.003G362400 G10 protein, putative, expressed K12873: BUD31, bud site selection protein 31


Gene co-expression network
sample Sobic003G127700 Sobic003G127700 Sobic002G378401 Sobic002G378401 Sobic003G127700--Sobic002G378401 Sobic002G116200 Sobic002G116200 Sobic003G127700--Sobic002G116200 Sobic003G367900 Sobic003G367900 Sobic003G127700--Sobic003G367900 Sobic010G210000 Sobic010G210000 Sobic003G127700--Sobic010G210000 Sobic007G068000 Sobic007G068000 Sobic003G127700--Sobic007G068000 Sobic009G258600 Sobic009G258600 Sobic003G127700--Sobic009G258600 Sobic010G008100 Sobic010G008100 Sobic003G127700--Sobic010G008100 Sobic002G280200 Sobic002G280200 Sobic003G127700--Sobic002G280200 Sobic009G050200 Sobic009G050200 Sobic003G127700--Sobic009G050200 Sobic002G378401--Sobic003G127700 Sobic003G024500 Sobic003G024500 Sobic002G378401--Sobic003G024500 Sobic009G149800 Sobic009G149800 Sobic002G378401--Sobic009G149800 Sobic002G378401--Sobic007G068000 Sobic002G378401--Sobic002G116200 Sobic001G233800 Sobic001G233800 Sobic002G378401--Sobic001G233800 Sobic003G150000 Sobic003G150000 Sobic002G378401--Sobic003G150000 Sobic006G231700 Sobic006G231700 Sobic002G378401--Sobic006G231700 Sobic001G225700 Sobic001G225700 Sobic002G378401--Sobic001G225700 Sobic003G362400 Sobic003G362400 Sobic002G116200--Sobic003G362400 Sobic005G111100 Sobic005G111100 Sobic002G116200--Sobic005G111100 Sobic005G157200 Sobic005G157200 Sobic002G116200--Sobic005G157200 Sobic002G078400 Sobic002G078400 Sobic002G116200--Sobic002G078400 Sobic003G321700 Sobic003G321700 Sobic002G116200--Sobic003G321700 Sobic001G445800 Sobic001G445800 Sobic002G116200--Sobic001G445800 Sobic004G300900 Sobic004G300900 Sobic002G116200--Sobic004G300900 Sobic001G128400 Sobic001G128400 Sobic002G116200--Sobic001G128400 Sobic001G331900 Sobic001G331900 Sobic002G116200--Sobic001G331900 Sobic001G404100 Sobic001G404100 Sobic003G367900--Sobic001G404100 Sobic006G052400 Sobic006G052400 Sobic003G367900--Sobic006G052400 Sobic001G096100 Sobic001G096100 Sobic003G367900--Sobic001G096100 Sobic006G281200 Sobic006G281200 Sobic003G367900--Sobic006G281200 Sobic003G367900--Sobic003G127700 Sobic002G331300 Sobic002G331300 Sobic003G367900--Sobic002G331300 Sobic004G175700 Sobic004G175700 Sobic003G367900--Sobic004G175700 Sobic003G367900--Sobic009G258600 Sobic008G100000 Sobic008G100000 Sobic003G367900--Sobic008G100000 Sobic003G018600 Sobic003G018600 Sobic010G210000--Sobic003G018600 Sobic002G376500 Sobic002G376500 Sobic010G210000--Sobic002G376500 Sobic006G115000 Sobic006G115000 Sobic010G210000--Sobic006G115000 Sobic010G210000--Sobic003G362400 Sobic009G012700 Sobic009G012700 Sobic010G210000--Sobic009G012700 Sobic010G210000--Sobic009G050200 Sobic003G073900 Sobic003G073900 Sobic010G210000--Sobic003G073900 Sobic001G018800 Sobic001G018800 Sobic010G210000--Sobic001G018800 Sobic004G062400 Sobic004G062400 Sobic010G210000--Sobic004G062400 Sobic002G222900 Sobic002G222900 Sobic007G068000--Sobic002G222900 Sobic001G501200 Sobic001G501200 Sobic007G068000--Sobic001G501200 Sobic004G265700 Sobic004G265700 Sobic007G068000--Sobic004G265700 Sobic007G068000--Sobic003G362400 Sobic008G189300 Sobic008G189300 Sobic007G068000--Sobic008G189300 Sobic007G091000 Sobic007G091000 Sobic007G068000--Sobic007G091000 Sobic004G103700 Sobic004G103700 Sobic007G068000--Sobic004G103700 Sobic001G224400 Sobic001G224400 Sobic007G068000--Sobic001G224400 Sobic007G068000--Sobic002G078400 Sobic009G258600--Sobic003G127700 Sobic009G258600--Sobic010G210000 Sobic009G258600--Sobic003G367900 Sobic003G028100 Sobic003G028100 Sobic009G258600--Sobic003G028100 Sobic009G258600--Sobic009G012700 Sobic004G137900 Sobic004G137900 Sobic009G258600--Sobic004G137900 Sobic009G258600--Sobic002G331300 Sobic009G258600--Sobic001G096100 Sobic003G190800 Sobic003G190800 Sobic009G258600--Sobic003G190800 Sobic001G403700 Sobic001G403700 Sobic010G008100--Sobic001G403700 Sobic009G008600 Sobic009G008600 Sobic010G008100--Sobic009G008600 Sobic008G132800 Sobic008G132800 Sobic010G008100--Sobic008G132800 Sobic009G104000 Sobic009G104000 Sobic010G008100--Sobic009G104000 Sobic003G424800 Sobic003G424800 Sobic010G008100--Sobic003G424800 Sobic010G213400 Sobic010G213400 Sobic010G008100--Sobic010G213400 Sobic010G008100--Sobic002G078400 Sobic010G008100--Sobic001G331900 Sobic010G008100--Sobic005G157200 Sobic006G062800 Sobic006G062800 Sobic002G280200--Sobic006G062800 Sobic002G280200--Sobic010G213400 Sobic002G280200--Sobic002G116200 Sobic002G280200--Sobic005G111100 Sobic002G280200--Sobic003G362400 Sobic010G150575 Sobic010G150575 Sobic002G280200--Sobic010G150575 Sobic002G280200--Sobic003G018600 Sobic001G066700 Sobic001G066700 Sobic002G280200--Sobic001G066700 Sobic006G131400 Sobic006G131400 Sobic002G280200--Sobic006G131400 Sobic009G050200--Sobic003G018600 Sobic009G050200--Sobic006G052400 Sobic008G058300 Sobic008G058300 Sobic009G050200--Sobic008G058300 Sobic009G050200--Sobic001G331900 Sobic009G050200--Sobic005G157200 Sobic009G050200--Sobic001G018800 Sobic001G377800 Sobic001G377800 Sobic009G050200--Sobic001G377800 Sobic001G340500 Sobic001G340500 Sobic009G050200--Sobic001G340500 Sobic004G002350 Sobic004G002350 Sobic009G050200--Sobic004G002350
Octagon: transcription factors


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