Gene annotation
Transcriptome id Sobic.009G258600.2,Sobic.009G258600.1
Synonym Sb09g030810
Functional annotation LSM domain containing protein, expressed
UniProt A0A1B6PAB8 , A0A1B6PAQ4
Pfam PF01423
Panther DB PTHR15588
NCBI CDD KOG1784; Small Nuclear ribonucleoprotein splicing factor
KEGG Orthology K12627; U6 snRNA-associated Sm-like protein LSm8
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G65700 : Small nuclear ribonucleoprotein family protein
RAP-DB (Rice) LOC_Os05g51650.1 : LSM domain containing protein, expressed
MaizeGDB (Corn) Zm00025a044465
Brachypodium -
Barley HORVU1Hr1G095060.3 , HORVU1Hr1G095060.2 , HORVU1Hr1G095060.1 , HORVU1Hr1G095060.7 , HORVU1Hr1G095060.6 , HORVU1Hr1G095060.5
Wheat TraesCS1B02G478200 , TraesCS1D02G451800 , TraesCS1A02G443700
Populus -


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cDNA sequences
Sobic.009G258600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G127700 split hand/foot malformation type 1, putative, expressed K10881: SHFM1, DSS1, 26 proteasome complex subunit DSS1
2 Sobic.010G210000 ubiquitin family protein, putative, expressed K12158: ubiquitin-like protein Nedd8
3 Sobic.003G367900 LSM domain containing protein, expressed K12622: U6 snRNA-associated Sm-like protein LSm3
4 Sobic.003G028100 MPPN domain containing protein, expressed K14313: NUP35, nuclear pore complex protein Nup53
5 Sobic.009G012700 LSM domain containing protein, expressed K11096: SNRPD2, small nuclear ribonucleoprotein D2
6 Sobic.004G137900 wiskott-Aldrich syndrome protein family member 2, putative, expressed -
7 Sobic.002G331300 60S ribosomal protein L38, putative, expressed K02923: RP-L38e, large subunit ribosomal protein L38e
8 Sobic.001G096100 DNA-binding protein-related, putative, expressed K07466: RFA1, RPA1, replication factor A1
9 Sobic.003G190800 GA18326-PA, putative, expressed -
10 Sobic.008G093200 expressed protein -
11 Sobic.001G404100 expressed protein K03237: translation initiation factor 2 subunit 1
12 Sobic.008G100000 40S ribosomal protein S9-2, putative, expressed K02997: RP-S9e, small subunit ribosomal protein S9e
13 Sobic.008G098800 40S ribosomal protein S6, putative, expressed K02991: RP-S6e, small subunit ribosomal protein S6e
14 Sobic.010G013900 DAG protein, chloroplast precursor, putative, expressed -
15 Sobic.006G052400 LSM domain containing protein, expressed K12625: U6 snRNA-associated Sm-like protein LSm6
16 Sobic.006G231700 LSM domain containing protein, expressed K12626: U6 snRNA-associated Sm-like protein LSm7
17 Sobic.003G424800 MKI67 FHA domain-interacting nucleolar phosphoprotein(PubMedID : 24906815)@RNA recognition motif containing protein, putative, expressed K14838: nucleolar protein 15
18 Sobic.006G281200 csAtPR5, putative, expressed -
19 Sobic.006G079900 COP9 signalosome complex subunit 8, putative, expressed K12181: COPS8, COP9 signalosome complex subunit 8
20 Sobic.001G250300 oxidoreductase, putative, expressed K00472: prolyl 4-hydroxylase


Gene co-expression network
sample Sobic009G258600 Sobic009G258600 Sobic003G127700 Sobic003G127700 Sobic009G258600--Sobic003G127700 Sobic010G210000 Sobic010G210000 Sobic009G258600--Sobic010G210000 Sobic003G367900 Sobic003G367900 Sobic009G258600--Sobic003G367900 Sobic003G028100 Sobic003G028100 Sobic009G258600--Sobic003G028100 Sobic009G012700 Sobic009G012700 Sobic009G258600--Sobic009G012700 Sobic004G137900 Sobic004G137900 Sobic009G258600--Sobic004G137900 Sobic002G331300 Sobic002G331300 Sobic009G258600--Sobic002G331300 Sobic001G096100 Sobic001G096100 Sobic009G258600--Sobic001G096100 Sobic003G190800 Sobic003G190800 Sobic009G258600--Sobic003G190800 Sobic002G378401 Sobic002G378401 Sobic003G127700--Sobic002G378401 Sobic002G116200 Sobic002G116200 Sobic003G127700--Sobic002G116200 Sobic003G127700--Sobic003G367900 Sobic003G127700--Sobic010G210000 Sobic007G068000 Sobic007G068000 Sobic003G127700--Sobic007G068000 Sobic003G127700--Sobic009G258600 Sobic010G008100 Sobic010G008100 Sobic003G127700--Sobic010G008100 Sobic002G280200 Sobic002G280200 Sobic003G127700--Sobic002G280200 Sobic009G050200 Sobic009G050200 Sobic003G127700--Sobic009G050200 Sobic003G018600 Sobic003G018600 Sobic010G210000--Sobic003G018600 Sobic002G376500 Sobic002G376500 Sobic010G210000--Sobic002G376500 Sobic006G115000 Sobic006G115000 Sobic010G210000--Sobic006G115000 Sobic003G362400 Sobic003G362400 Sobic010G210000--Sobic003G362400 Sobic010G210000--Sobic009G012700 Sobic010G210000--Sobic009G050200 Sobic003G073900 Sobic003G073900 Sobic010G210000--Sobic003G073900 Sobic001G018800 Sobic001G018800 Sobic010G210000--Sobic001G018800 Sobic004G062400 Sobic004G062400 Sobic010G210000--Sobic004G062400 Sobic001G404100 Sobic001G404100 Sobic003G367900--Sobic001G404100 Sobic006G052400 Sobic006G052400 Sobic003G367900--Sobic006G052400 Sobic003G367900--Sobic001G096100 Sobic006G281200 Sobic006G281200 Sobic003G367900--Sobic006G281200 Sobic003G367900--Sobic003G127700 Sobic003G367900--Sobic002G331300 Sobic004G175700 Sobic004G175700 Sobic003G367900--Sobic004G175700 Sobic003G367900--Sobic009G258600 Sobic008G100000 Sobic008G100000 Sobic003G367900--Sobic008G100000 Sobic009G212300 Sobic009G212300 Sobic003G028100--Sobic009G212300 Sobic009G234400 Sobic009G234400 Sobic003G028100--Sobic009G234400 Sobic003G028100--Sobic001G096100 Sobic003G196800 Sobic003G196800 Sobic003G028100--Sobic003G196800 Sobic006G079900 Sobic006G079900 Sobic003G028100--Sobic006G079900 Sobic007G217400 Sobic007G217400 Sobic003G028100--Sobic007G217400 Sobic010G013900 Sobic010G013900 Sobic003G028100--Sobic010G013900 Sobic003G028100--Sobic002G331300 Sobic003G028100--Sobic001G404100 Sobic008G149450 Sobic008G149450 Sobic009G012700--Sobic008G149450 Sobic004G342400 Sobic004G342400 Sobic009G012700--Sobic004G342400 Sobic009G012700--Sobic006G115000 Sobic002G045100 Sobic002G045100 Sobic009G012700--Sobic002G045100 Sobic003G287300 Sobic003G287300 Sobic009G012700--Sobic003G287300 Sobic009G012700--Sobic010G210000 Sobic010G023900 Sobic010G023900 Sobic009G012700--Sobic010G023900 Sobic003G011100 Sobic003G011100 Sobic009G012700--Sobic003G011100 Sobic004G002350 Sobic004G002350 Sobic009G012700--Sobic004G002350 Sobic004G012800 Sobic004G012800 Sobic004G137900--Sobic004G012800 Sobic006G231700 Sobic006G231700 Sobic004G137900--Sobic006G231700 Sobic003G358300 Sobic003G358300 Sobic004G137900--Sobic003G358300 Sobic006G013900 Sobic006G013900 Sobic004G137900--Sobic006G013900 Sobic004G137900--Sobic002G331300 Sobic001G286300 Sobic001G286300 Sobic004G137900--Sobic001G286300 Sobic009G120100 Sobic009G120100 Sobic004G137900--Sobic009G120100 Sobic003G129800 Sobic003G129800 Sobic004G137900--Sobic003G129800 Sobic005G111100 Sobic005G111100 Sobic004G137900--Sobic005G111100 Sobic002G331300--Sobic006G115000 Sobic005G050500 Sobic005G050500 Sobic002G331300--Sobic005G050500 Sobic002G331300--Sobic003G129800 Sobic009G179100 Sobic009G179100 Sobic002G331300--Sobic009G179100 Sobic002G331300--Sobic004G342400 Sobic001G334300 Sobic001G334300 Sobic002G331300--Sobic001G334300 Sobic009G233400 Sobic009G233400 Sobic002G331300--Sobic009G233400 Sobic009G227400 Sobic009G227400 Sobic002G331300--Sobic009G227400 Sobic002G331300--Sobic010G023900 Sobic004G066800 Sobic004G066800 Sobic001G096100--Sobic004G066800 Sobic004G138800 Sobic004G138800 Sobic001G096100--Sobic004G138800 Sobic003G330500 Sobic003G330500 Sobic001G096100--Sobic003G330500 Sobic006G252200 Sobic006G252200 Sobic001G096100--Sobic006G252200 Sobic004G224900 Sobic004G224900 Sobic001G096100--Sobic004G224900 Sobic002G255100 Sobic002G255100 Sobic001G096100--Sobic002G255100 Sobic001G481700 Sobic001G481700 Sobic001G096100--Sobic001G481700 Sobic001G096100--Sobic003G196800 Sobic010G038700 Sobic010G038700 Sobic001G096100--Sobic010G038700 Sobic003G190800--Sobic006G079900 Sobic009G124400 Sobic009G124400 Sobic003G190800--Sobic009G124400 Sobic003G190800--Sobic009G258600 Sobic003G190800--Sobic003G367900 Sobic002G279000 Sobic002G279000 Sobic003G190800--Sobic002G279000 Sobic005G206700 Sobic005G206700 Sobic003G190800--Sobic005G206700 Sobic003G190800--Sobic006G231700 Sobic003G190800--Sobic004G137900 Sobic001G199300 Sobic001G199300 Sobic003G190800--Sobic001G199300
Octagon: transcription factors


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