Gene annotation
Transcriptome id Sobic.001G250300.1
Synonym Sb01g022150
Functional annotation oxidoreductase, putative, expressed
UniProt C5WM56
Pfam PF03171
Panther DB PTHR10869 PTHR10869:SF55
NCBI CDD KOG1591; Prolyl 4-hydroxylase alpha subunit
KEGG Orthology K00472; prolyl 4-hydroxylase
Gene Ontology GO:0016491; oxidoreductase activity


Orthologs (automatic annotation)
TAIR AT3G28480 : Oxoglutarate/iron-dependent oxygenase
RAP-DB (Rice) LOC_Os10g27340.2 : oxidoreductase, putative, expressed
MaizeGDB (Corn) Zm00025a017794 , Zm00025a016024 , Zm00025a006954
Brachypodium KQJ96682
Barley HORVU1Hr1G032190.4 , HORVU1Hr1G032190.5 , HORVU1Hr1G032190.6 , HORVU1Hr1G032190.7 , HORVU1Hr1G032190.1 , HORVU1Hr1G032190.2 , HORVU1Hr1G032190.3 , HORVU1Hr1G032190.8 , HORVU1Hr1G032190.9
Wheat TraesCS1D02G132900 , TraesCS1A02G139300 , TraesCS1B02G149500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G001900 expressed protein -
2 Sobic.003G322300 expressed protein -
3 Sobic.010G258000 peptidyl-prolyl cis-trans isomerase, putative, expressed K01802: peptidylprolyl isomerase
4 Sobic.007G220900 ribosomal L9, putative, expressed K02939: RP-L9, MRPL9, large subunit ribosomal protein L9
5 Sobic.006G203900 vacuolar ATPase G subunit, putative, expressed K02152: ATPeV1G, V-type H+-transporting ATPase subunit G
6 Sobic.006G094600 LSM domain containing protein, expressed K12620: U6 snRNA-associated Sm-like protein LSm1
7 Sobic.006G211800 coatomer subunit epsilon, putative, expressed K17268: coatomer subunit epsilon
8 Sobic.003G131300 glycosyl hydrolases family 17 protein, putative, expressed -
9 Sobic.002G428200 26S protease regulatory subunit 4, putative, expressed K03062: PSMC1, 26S proteasome regulatory subunit T2
10 Sobic.009G168000 selT-like protein precursor, putative, expressed -
11 Sobic.001G025600 huntingtin-interacting protein HYPK, putative, expressed -
12 Sobic.003G287300 50S ribosomal protein L20, putative, expressed K02887: RP-L20, MRPL20, large subunit ribosomal protein L20
13 Sobic.001G035400 ras-related protein, putative, expressed K07901: RAB8A, Ras-related protein Rab-8A
14 Sobic.009G234400 eukaryotic translation initiation factor 3 subunit D, putative, expressed K03251: translation initiation factor 3 subunit D
15 Sobic.006G231500 acetyltransferase, GNAT family, putative, expressed K00670: NAA30, N-alpha-acetyltransferase 30
16 Sobic.001G096100 DNA-binding protein-related, putative, expressed K07466: RFA1, RPA1, replication factor A1
17 Sobic.004G137900 wiskott-Aldrich syndrome protein family member 2, putative, expressed -
18 Sobic.005G027300 ribosomal protein L24, putative, expressed K02895: RP-L24, MRPL24, large subunit ribosomal protein L24
19 Sobic.009G212300 eukaryotic translation initiation factor 3 subunit F, putative, expressed K03249: translation initiation factor 3 subunit F
20 Sobic.003G118400 expressed protein -


Gene co-expression network
sample Sobic001G250300 Sobic001G250300 Sobic009G001900 Sobic009G001900 Sobic001G250300--Sobic009G001900 Sobic003G322300 Sobic003G322300 Sobic001G250300--Sobic003G322300 Sobic010G258000 Sobic010G258000 Sobic001G250300--Sobic010G258000 Sobic007G220900 Sobic007G220900 Sobic001G250300--Sobic007G220900 Sobic006G203900 Sobic006G203900 Sobic001G250300--Sobic006G203900 Sobic006G094600 Sobic006G094600 Sobic001G250300--Sobic006G094600 Sobic006G211800 Sobic006G211800 Sobic001G250300--Sobic006G211800 Sobic003G131300 Sobic003G131300 Sobic001G250300--Sobic003G131300 Sobic002G428200 Sobic002G428200 Sobic001G250300--Sobic002G428200 Sobic002G296200 Sobic002G296200 Sobic009G001900--Sobic002G296200 Sobic008G136800 Sobic008G136800 Sobic009G001900--Sobic008G136800 Sobic004G066800 Sobic004G066800 Sobic009G001900--Sobic004G066800 Sobic009G001900--Sobic006G203900 Sobic009G001900--Sobic003G322300 Sobic004G164000 Sobic004G164000 Sobic009G001900--Sobic004G164000 Sobic006G231500 Sobic006G231500 Sobic009G001900--Sobic006G231500 Sobic004G260200 Sobic004G260200 Sobic009G001900--Sobic004G260200 Sobic002G309700 Sobic002G309700 Sobic009G001900--Sobic002G309700 Sobic003G238500 Sobic003G238500 Sobic003G322300--Sobic003G238500 Sobic001G286200 Sobic001G286200 Sobic003G322300--Sobic001G286200 Sobic003G322300--Sobic009G001900 Sobic002G395000 Sobic002G395000 Sobic003G322300--Sobic002G395000 Sobic003G322300--Sobic006G203900 Sobic002G078300 Sobic002G078300 Sobic003G322300--Sobic002G078300 Sobic003G322300--Sobic002G296200 Sobic002G180300 Sobic002G180300 Sobic003G322300--Sobic002G180300 Sobic002G356400 Sobic002G356400 Sobic003G322300--Sobic002G356400 Sobic001G473400 Sobic001G473400 Sobic010G258000--Sobic001G473400 Sobic010G258000--Sobic006G203900 Sobic001G035400 Sobic001G035400 Sobic010G258000--Sobic001G035400 Sobic001G073600 Sobic001G073600 Sobic010G258000--Sobic001G073600 Sobic003G388700 Sobic003G388700 Sobic010G258000--Sobic003G388700 Sobic009G016500 Sobic009G016500 Sobic010G258000--Sobic009G016500 Sobic003G170300 Sobic003G170300 Sobic010G258000--Sobic003G170300 Sobic010G258000--Sobic008G136800 Sobic007G119600 Sobic007G119600 Sobic010G258000--Sobic007G119600 Sobic001G481700 Sobic001G481700 Sobic007G220900--Sobic001G481700 Sobic002G101000 Sobic002G101000 Sobic007G220900--Sobic002G101000 Sobic010G100000 Sobic010G100000 Sobic007G220900--Sobic010G100000 Sobic001G513500 Sobic001G513500 Sobic007G220900--Sobic001G513500 Sobic009G104100 Sobic009G104100 Sobic007G220900--Sobic009G104100 Sobic009G179100 Sobic009G179100 Sobic007G220900--Sobic009G179100 Sobic008G094600 Sobic008G094600 Sobic007G220900--Sobic008G094600 Sobic001G025600 Sobic001G025600 Sobic007G220900--Sobic001G025600 Sobic001G030300 Sobic001G030300 Sobic007G220900--Sobic001G030300 Sobic006G203900--Sobic008G136800 Sobic009G211900 Sobic009G211900 Sobic006G203900--Sobic009G211900 Sobic006G203900--Sobic001G035400 Sobic006G203900--Sobic001G073600 Sobic004G138300 Sobic004G138300 Sobic006G203900--Sobic004G138300 Sobic006G124300 Sobic006G124300 Sobic006G203900--Sobic006G124300 Sobic003G135600 Sobic003G135600 Sobic006G203900--Sobic003G135600 Sobic006G203900--Sobic009G001900 Sobic007G013900 Sobic007G013900 Sobic006G203900--Sobic007G013900 Sobic008G137600 Sobic008G137600 Sobic006G094600--Sobic008G137600 Sobic006G011000 Sobic006G011000 Sobic006G094600--Sobic006G011000 Sobic006G094600--Sobic003G131300 Sobic001G294900 Sobic001G294900 Sobic006G094600--Sobic001G294900 Sobic001G126200 Sobic001G126200 Sobic006G094600--Sobic001G126200 Sobic006G183000 Sobic006G183000 Sobic006G094600--Sobic006G183000 Sobic001G285300 Sobic001G285300 Sobic006G094600--Sobic001G285300 Sobic006G094600--Sobic002G428200 Sobic010G205300 Sobic010G205300 Sobic006G094600--Sobic010G205300 Sobic006G211800--Sobic002G428200 Sobic007G176200 Sobic007G176200 Sobic006G211800--Sobic007G176200 Sobic002G423800 Sobic002G423800 Sobic006G211800--Sobic002G423800 Sobic006G252200 Sobic006G252200 Sobic006G211800--Sobic006G252200 Sobic005G105500 Sobic005G105500 Sobic006G211800--Sobic005G105500 Sobic009G234400 Sobic009G234400 Sobic006G211800--Sobic009G234400 Sobic001G444300 Sobic001G444300 Sobic006G211800--Sobic001G444300 Sobic001G404100 Sobic001G404100 Sobic006G211800--Sobic001G404100 Sobic009G212300 Sobic009G212300 Sobic006G211800--Sobic009G212300 Sobic003G131300--Sobic004G164000 Sobic010G197900 Sobic010G197900 Sobic003G131300--Sobic010G197900 Sobic003G131300--Sobic006G094600 Sobic003G131300--Sobic001G126200 Sobic003G131300--Sobic001G035400 Sobic004G344800 Sobic004G344800 Sobic003G131300--Sobic004G344800 Sobic001G036700 Sobic001G036700 Sobic003G131300--Sobic001G036700 Sobic003G131300--Sobic009G001900 Sobic007G019501 Sobic007G019501 Sobic003G131300--Sobic007G019501 Sobic004G335000 Sobic004G335000 Sobic002G428200--Sobic004G335000 Sobic002G428200--Sobic007G176200 Sobic002G428200--Sobic006G211800 Sobic004G224900 Sobic004G224900 Sobic002G428200--Sobic004G224900 Sobic002G428200--Sobic006G252200 Sobic001G502200 Sobic001G502200 Sobic002G428200--Sobic001G502200 Sobic002G428200--Sobic008G137600 Sobic001G010700 Sobic001G010700 Sobic002G428200--Sobic001G010700 Sobic003G104700 Sobic003G104700 Sobic002G428200--Sobic003G104700
Octagon: transcription factors


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