Gene annotation
Transcriptome id Sobic.003G322300.1
Synonym Sb03g036890
Functional annotation expressed protein
UniProt C5XMD1
Pfam -
Panther DB PTHR33878 PTHR33878:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G27730 : copper ion binding
RAP-DB (Rice) LOC_Os09g39550.1 : expressed protein
MaizeGDB (Corn) Zm00025a039867 , Zm00025a027232
Brachypodium KQJ91598 , KQK02322 , KQK02323 , PNT65200
Barley HORVU6Hr1G063790.1 , HORVU4Hr1G000020.1 , HORVU4Hr1G000020.2
Wheat TraesCS7D02G103200 , TraesCS4A02G307300 , TraesCS4A02G307300 , TraesCS4D02G006700
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.003G322300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G238500 -(PubMedID : 26976818)@lactate/malate dehydrogenase, putative, expressed K00026: malate dehydrogenase
2 Sobic.001G286200 expressed protein K03966: NADH dehydrogenase (ubiquinone) 1 beta subcomplex subunit 10
3 Sobic.009G001900 expressed protein -
4 Sobic.002G395000 bacterial transferase hexapeptide domain containing protein, expressed -
5 Sobic.006G203900 vacuolar ATPase G subunit, putative, expressed K02152: ATPeV1G, V-type H+-transporting ATPase subunit G
6 Sobic.002G078300 acyl carrier protein, putative, expressed K03955: NADH dehydrogenase (ubiquinone) 1 alpha/beta subcomplex 1, acyl-carrier protein
7 Sobic.002G296200 expressed protein -
8 Sobic.002G180300 isochorismate synthase 1, chloroplast precursor, putative, expressed K15040: voltage-dependent anion channel protein 2
9 Sobic.002G356400 NADH dehydrogenase iron-sulfur protein 4, mitochondrial precursor, putative, expressed K03937: NADH dehydrogenase (ubiquinone) Fe-S protein 4
10 Sobic.004G260200 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed -
11 Sobic.010G264300 LYR motif containing protein, putative, expressed K03965: NADH dehydrogenase (ubiquinone) 1 beta subcomplex subunit 9
12 Sobic.002G309700 ATP synthase delta chain, mitochondrial precursor, putative, expressed K02134: ATPeF1D, ATP5D, F-type H+-transporting ATPase subunit delta
13 Sobic.002G308300 expressed protein -
14 Sobic.009G179100 ribosomal protein L7Ae, putative, expressed K02908: RP-L30e, large subunit ribosomal protein L30e
15 Sobic.001G370700 acyl carrier protein, putative, expressed K03955: NADH dehydrogenase (ubiquinone) 1 alpha/beta subcomplex 1, acyl-carrier protein
16 Sobic.001G030300 mitochondrial import inner membrane translocase subunit Tim, putative, expressed K17778: mitochondrial import inner membrane translocase subunit TIM10
17 Sobic.001G304400 expressed protein -
18 Sobic.002G131600 expressed protein -
19 Sobic.001G250300 oxidoreductase, putative, expressed K00472: prolyl 4-hydroxylase
20 Sobic.009G211900 expressed protein -


Gene co-expression network
sample Sobic003G322300 Sobic003G322300 Sobic003G238500 Sobic003G238500 Sobic003G322300--Sobic003G238500 Sobic001G286200 Sobic001G286200 Sobic003G322300--Sobic001G286200 Sobic009G001900 Sobic009G001900 Sobic003G322300--Sobic009G001900 Sobic002G395000 Sobic002G395000 Sobic003G322300--Sobic002G395000 Sobic006G203900 Sobic006G203900 Sobic003G322300--Sobic006G203900 Sobic002G078300 Sobic002G078300 Sobic003G322300--Sobic002G078300 Sobic002G296200 Sobic002G296200 Sobic003G322300--Sobic002G296200 Sobic002G180300 Sobic002G180300 Sobic003G322300--Sobic002G180300 Sobic002G356400 Sobic002G356400 Sobic003G322300--Sobic002G356400 Sobic003G238500--Sobic002G395000 Sobic003G238500--Sobic003G322300 Sobic004G260200 Sobic004G260200 Sobic003G238500--Sobic004G260200 Sobic004G294900 Sobic004G294900 Sobic003G238500--Sobic004G294900 Sobic004G155100 Sobic004G155100 Sobic003G238500--Sobic004G155100 Sobic009G240700 Sobic009G240700 Sobic003G238500--Sobic009G240700 Sobic003G238500--Sobic006G203900 Sobic008G084100 Sobic008G084100 Sobic003G238500--Sobic008G084100 Sobic001G073600 Sobic001G073600 Sobic003G238500--Sobic001G073600 Sobic001G286200--Sobic002G078300 Sobic010G264300 Sobic010G264300 Sobic001G286200--Sobic010G264300 Sobic001G304400 Sobic001G304400 Sobic001G286200--Sobic001G304400 Sobic007G211500 Sobic007G211500 Sobic001G286200--Sobic007G211500 Sobic001G286200--Sobic002G296200 Sobic007G134900 Sobic007G134900 Sobic001G286200--Sobic007G134900 Sobic009G212200 Sobic009G212200 Sobic001G286200--Sobic009G212200 Sobic002G308300 Sobic002G308300 Sobic001G286200--Sobic002G308300 Sobic002G263100 Sobic002G263100 Sobic001G286200--Sobic002G263100 Sobic009G001900--Sobic002G296200 Sobic008G136800 Sobic008G136800 Sobic009G001900--Sobic008G136800 Sobic004G066800 Sobic004G066800 Sobic009G001900--Sobic004G066800 Sobic009G001900--Sobic006G203900 Sobic009G001900--Sobic003G322300 Sobic004G164000 Sobic004G164000 Sobic009G001900--Sobic004G164000 Sobic006G231500 Sobic006G231500 Sobic009G001900--Sobic006G231500 Sobic009G001900--Sobic004G260200 Sobic002G309700 Sobic002G309700 Sobic009G001900--Sobic002G309700 Sobic002G395000--Sobic004G260200 Sobic003G135600 Sobic003G135600 Sobic002G395000--Sobic003G135600 Sobic009G224400 Sobic009G224400 Sobic002G395000--Sobic009G224400 Sobic002G395000--Sobic003G238500 Sobic002G395000--Sobic002G309700 Sobic002G395000--Sobic001G073600 Sobic002G395000--Sobic004G155100 Sobic007G023400 Sobic007G023400 Sobic002G395000--Sobic007G023400 Sobic002G395000--Sobic002G078300 Sobic006G203900--Sobic008G136800 Sobic009G211900 Sobic009G211900 Sobic006G203900--Sobic009G211900 Sobic001G035400 Sobic001G035400 Sobic006G203900--Sobic001G035400 Sobic006G203900--Sobic001G073600 Sobic004G138300 Sobic004G138300 Sobic006G203900--Sobic004G138300 Sobic006G124300 Sobic006G124300 Sobic006G203900--Sobic006G124300 Sobic006G203900--Sobic003G135600 Sobic006G203900--Sobic009G001900 Sobic007G013900 Sobic007G013900 Sobic006G203900--Sobic007G013900 Sobic002G078300--Sobic001G286200 Sobic002G078300--Sobic010G264300 Sobic002G078300--Sobic004G260200 Sobic002G078300--Sobic002G395000 Sobic002G078300--Sobic002G309700 Sobic002G078300--Sobic007G211500 Sobic002G078300--Sobic002G356400 Sobic001G370700 Sobic001G370700 Sobic002G078300--Sobic001G370700 Sobic002G078300--Sobic002G308300 Sobic006G013000 Sobic006G013000 Sobic002G296200--Sobic006G013000 Sobic002G296200--Sobic007G134900 Sobic001G074700 Sobic001G074700 Sobic002G296200--Sobic001G074700 Sobic003G215700 Sobic003G215700 Sobic002G296200--Sobic003G215700 Sobic002G296200--Sobic002G309700 Sobic001G134400 Sobic001G134400 Sobic002G296200--Sobic001G134400 Sobic001G047800 Sobic001G047800 Sobic002G296200--Sobic001G047800 Sobic002G296200--Sobic001G286200 Sobic003G129800 Sobic003G129800 Sobic002G296200--Sobic003G129800 Sobic002G180300--Sobic002G309700 Sobic002G180300--Sobic006G013000 Sobic002G180300--Sobic002G356400 Sobic009G179100 Sobic009G179100 Sobic002G180300--Sobic009G179100 Sobic009G115700 Sobic009G115700 Sobic002G180300--Sobic009G115700 Sobic002G180300--Sobic010G264300 Sobic001G404800 Sobic001G404800 Sobic002G180300--Sobic001G404800 Sobic002G180300--Sobic001G370700 Sobic002G180300--Sobic002G308300 Sobic002G356400--Sobic002G309700 Sobic001G465800 Sobic001G465800 Sobic002G356400--Sobic001G465800 Sobic009G119900 Sobic009G119900 Sobic002G356400--Sobic009G119900 Sobic001G350600 Sobic001G350600 Sobic002G356400--Sobic001G350600 Sobic004G170400 Sobic004G170400 Sobic002G356400--Sobic004G170400 Sobic002G356400--Sobic004G260200 Sobic002G356400--Sobic001G404800 Sobic004G259200 Sobic004G259200 Sobic002G356400--Sobic004G259200 Sobic003G209000 Sobic003G209000 Sobic002G356400--Sobic003G209000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.