Gene annotation
Transcriptome id Sobic.003G131300.1
Synonym Sb03g011180
Functional annotation glycosyl hydrolases family 17 protein, putative, expressed
UniProt C5XH98
Pfam -
Panther DB PTHR36394 PTHR36394:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G21070 : -
RAP-DB (Rice) LOC_Os01g17020.1 : glycosyl hydrolases family 17 protein, putative, expressed
MaizeGDB (Corn) Zm00025a024139
Brachypodium KQK03919
Barley -
Wheat TraesCS3A02G189800 , TraesCS3D02G193300 , TraesCS3B02G218900
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.003G131300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G164000 glycosyltransferase, putative, expressed K08238: xyloglucan 6-xylosyltransferase
2 Sobic.010G197900 expressed protein -
3 Sobic.006G094600 LSM domain containing protein, expressed K12620: U6 snRNA-associated Sm-like protein LSm1
4 Sobic.001G126200 acetyltransferase, GNAT family, putative, expressed K17972: NAA20, N-terminal acetyltransferase B complex catalytic subunit
5 Sobic.001G035400 ras-related protein, putative, expressed K07901: RAB8A, Ras-related protein Rab-8A
6 Sobic.004G344800 NADH dehydrogenase 1 alpha subcomplex subunit 9,mitochondrial precursor, putative, expressed K03953: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 9
7 Sobic.001G036700 OsFBX442 - F-box domain containing protein, expressed -
8 Sobic.009G001900 expressed protein -
9 Sobic.007G019501 - K13448: calcium-binding protein CML
10 Sobic.007G192100 emp24/gp25L/p24 family protein, putative, expressed -
11 Sobic.008G137600 RNA recognition motif containing protein, expressed K12900: FUS-interacting serine-arginine-rich protein 1
12 Sobic.001G013200 actin-related protein 2/3 complex subunit 4, putative, expressed K05755: actin related protein 2/3 complex, subunit 4
13 Sobic.004G159000 cytochrome b-c1 complex subunit Rieske, mitochondrial precursor, putative, expressed K00411: UQCRFS1, RIP1, ubiquinol-cytochrome c reductase iron-sulfur subunit
14 Sobic.001G392800 NADH dehydrogenase 1 alpha subcomplex subunit 5, putative, expressed K03949: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 5
15 Sobic.007G217400 COP9 signalosome complex subunit 6a, putative, expressed K12179: COPS6, COP9 signalosome complex subunit 6
16 Sobic.006G203900 vacuolar ATPase G subunit, putative, expressed K02152: ATPeV1G, V-type H+-transporting ATPase subunit G
17 Sobic.009G207200 ER lumen protein retaining receptor, putative, expressed K10949: ER lumen protein retaining receptor
18 Sobic.004G012800 DNA-directed RNA polymerase II subunit RPB4, putative, expressed K03012: RPB4, DNA-directed RNA polymerase II subunit RPB4
19 Sobic.006G222400 RNA recognition motif containing protein, putative, expressed -
20 Sobic.001G532100 proteasome subunit, putative, expressed K12175: GPS1, COPS1, COP9 signalosome complex subunit 1


Gene co-expression network
sample Sobic003G131300 Sobic003G131300 Sobic004G164000 Sobic004G164000 Sobic003G131300--Sobic004G164000 Sobic010G197900 Sobic010G197900 Sobic003G131300--Sobic010G197900 Sobic006G094600 Sobic006G094600 Sobic003G131300--Sobic006G094600 Sobic001G126200 Sobic001G126200 Sobic003G131300--Sobic001G126200 Sobic001G035400 Sobic001G035400 Sobic003G131300--Sobic001G035400 Sobic004G344800 Sobic004G344800 Sobic003G131300--Sobic004G344800 Sobic001G036700 Sobic001G036700 Sobic003G131300--Sobic001G036700 Sobic009G001900 Sobic009G001900 Sobic003G131300--Sobic009G001900 Sobic007G019501 Sobic007G019501 Sobic003G131300--Sobic007G019501 Sobic004G164000--Sobic003G131300 Sobic004G164000--Sobic007G019501 Sobic004G164000--Sobic009G001900 Sobic004G159000 Sobic004G159000 Sobic004G164000--Sobic004G159000 Sobic002G090700 Sobic002G090700 Sobic004G164000--Sobic002G090700 Sobic001G392800 Sobic001G392800 Sobic004G164000--Sobic001G392800 Sobic001G309500 Sobic001G309500 Sobic004G164000--Sobic001G309500 Sobic008G136800 Sobic008G136800 Sobic004G164000--Sobic008G136800 Sobic008G025700 Sobic008G025700 Sobic004G164000--Sobic008G025700 Sobic010G197900--Sobic003G131300 Sobic001G367000 Sobic001G367000 Sobic010G197900--Sobic001G367000 Sobic002G401700 Sobic002G401700 Sobic010G197900--Sobic002G401700 Sobic010G197900--Sobic006G094600 Sobic010G197900--Sobic008G136800 Sobic003G374000 Sobic003G374000 Sobic010G197900--Sobic003G374000 Sobic010G197900--Sobic004G344800 Sobic010G197900--Sobic009G001900 Sobic010G197900--Sobic004G164000 Sobic008G137600 Sobic008G137600 Sobic006G094600--Sobic008G137600 Sobic006G011000 Sobic006G011000 Sobic006G094600--Sobic006G011000 Sobic006G094600--Sobic003G131300 Sobic001G294900 Sobic001G294900 Sobic006G094600--Sobic001G294900 Sobic006G094600--Sobic001G126200 Sobic006G183000 Sobic006G183000 Sobic006G094600--Sobic006G183000 Sobic001G285300 Sobic001G285300 Sobic006G094600--Sobic001G285300 Sobic002G428200 Sobic002G428200 Sobic006G094600--Sobic002G428200 Sobic010G205300 Sobic010G205300 Sobic006G094600--Sobic010G205300 Sobic006G222400 Sobic006G222400 Sobic001G126200--Sobic006G222400 Sobic004G224800 Sobic004G224800 Sobic001G126200--Sobic004G224800 Sobic001G126200--Sobic006G094600 Sobic001G126200--Sobic003G131300 Sobic001G126200--Sobic001G285300 Sobic010G238700 Sobic010G238700 Sobic001G126200--Sobic010G238700 Sobic001G126200--Sobic001G367000 Sobic002G044000 Sobic002G044000 Sobic001G126200--Sobic002G044000 Sobic007G192100 Sobic007G192100 Sobic001G126200--Sobic007G192100 Sobic001G035400--Sobic004G344800 Sobic006G203900 Sobic006G203900 Sobic001G035400--Sobic006G203900 Sobic008G084100 Sobic008G084100 Sobic001G035400--Sobic008G084100 Sobic007G092100 Sobic007G092100 Sobic001G035400--Sobic007G092100 Sobic009G164700 Sobic009G164700 Sobic001G035400--Sobic009G164700 Sobic002G087000 Sobic002G087000 Sobic001G035400--Sobic002G087000 Sobic001G073600 Sobic001G073600 Sobic001G035400--Sobic001G073600 Sobic001G443200 Sobic001G443200 Sobic001G035400--Sobic001G443200 Sobic001G116000 Sobic001G116000 Sobic001G035400--Sobic001G116000 Sobic004G344800--Sobic001G073600 Sobic003G135600 Sobic003G135600 Sobic004G344800--Sobic003G135600 Sobic004G344800--Sobic004G159000 Sobic004G344800--Sobic001G035400 Sobic009G191400 Sobic009G191400 Sobic004G344800--Sobic009G191400 Sobic004G030000 Sobic004G030000 Sobic004G344800--Sobic004G030000 Sobic002G262200 Sobic002G262200 Sobic004G344800--Sobic002G262200 Sobic002G396700 Sobic002G396700 Sobic004G344800--Sobic002G396700 Sobic001G031900 Sobic001G031900 Sobic004G344800--Sobic001G031900 Sobic001G532100 Sobic001G532100 Sobic001G036700--Sobic001G532100 Sobic002G176400 Sobic002G176400 Sobic001G036700--Sobic002G176400 Sobic001G036700--Sobic007G192100 Sobic001G036700--Sobic001G285300 Sobic001G036700--Sobic006G094600 Sobic001G036700--Sobic001G126200 Sobic001G036700--Sobic003G131300 Sobic003G420700 Sobic003G420700 Sobic001G036700--Sobic003G420700 Sobic009G086200 Sobic009G086200 Sobic001G036700--Sobic009G086200 Sobic002G296200 Sobic002G296200 Sobic009G001900--Sobic002G296200 Sobic009G001900--Sobic008G136800 Sobic004G066800 Sobic004G066800 Sobic009G001900--Sobic004G066800 Sobic009G001900--Sobic006G203900 Sobic003G322300 Sobic003G322300 Sobic009G001900--Sobic003G322300 Sobic009G001900--Sobic004G164000 Sobic006G231500 Sobic006G231500 Sobic009G001900--Sobic006G231500 Sobic004G260200 Sobic004G260200 Sobic009G001900--Sobic004G260200 Sobic002G309700 Sobic002G309700 Sobic009G001900--Sobic002G309700 Sobic007G019501--Sobic004G164000 Sobic007G019501--Sobic004G159000 Sobic002G260200 Sobic002G260200 Sobic007G019501--Sobic002G260200 Sobic007G019501--Sobic001G392800 Sobic007G019501--Sobic003G131300 Sobic007G019501--Sobic009G001900 Sobic004G012800 Sobic004G012800 Sobic007G019501--Sobic004G012800 Sobic001G031800 Sobic001G031800 Sobic007G019501--Sobic001G031800 Sobic002G254650 Sobic002G254650 Sobic007G019501--Sobic002G254650
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.