Gene annotation
Transcriptome id Sobic.001G013200.1
Synonym ARPC4, Sb01g001300
Functional annotation actin-related protein 2/3 complex subunit 4, putative, expressed
UniProt C5WSX3
Pfam PF05856
Panther DB PTHR22629
NCBI CDD KOG1876; Actin-related protein Arp2/3 complex, subunit ARPC4
KEGG Orthology K05755; actin related protein 2/3 complex, subunit 4
Gene Ontology GO:0015629; actin cytoskeleton GO:0005885Arp2/3 protein complex


Orthologs (automatic annotation)
TAIR AT4G14147 : protein binding
RAP-DB (Rice) LOC_Os03g63090.1 : actin-related protein 2/3 complex subunit 4, putative, expressed
MaizeGDB (Corn) Zm00025a016335
Brachypodium KQK12118
Barley HORVU5Hr1G121620.1 , HORVU5Hr1G121620.3 , HORVU5Hr1G121620.2 , HORVU5Hr1G121620.5 , HORVU5Hr1G121620.4
Wheat TraesCS4A02G334700 , TraesCS5B02G550400
Populus -


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cDNA sequences
Sobic.001G013200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G167000 protein phosphotase protein, putative, expressed -
2 Sobic.007G048700 stomatin-like protein 2, putative, expressed -
3 Sobic.001G035400 ras-related protein, putative, expressed K07901: RAB8A, Ras-related protein Rab-8A
4 Sobic.008G014300 mitochondrial glycoprotein, putative, expressed K15414: complement component 1 Q subcomponent-binding protein, mitochondrial
5 Sobic.006G203900 vacuolar ATPase G subunit, putative, expressed K02152: ATPeV1G, V-type H+-transporting ATPase subunit G
6 Sobic.009G112900 expressed protein K18170: LYRM7, complex III assembly factor LYRM7
7 Sobic.003G131300 glycosyl hydrolases family 17 protein, putative, expressed -
8 Sobic.010G197900 expressed protein -
9 Sobic.007G003100 transmembrane protein 18, putative, expressed -
10 Sobic.004G164000 glycosyltransferase, putative, expressed K08238: xyloglucan 6-xylosyltransferase
11 Sobic.004G031800 expressed protein -
12 Sobic.003G074900 expressed protein -
13 Sobic.001G116000 dynamin family protein, putative, expressed K01528: dynamin 1/3
14 Sobic.001G347700 protein phosphotase protein, putative, expressed -
15 Sobic.008G136800 mitochondrial import inner membrane translocase subunit Tim, putative, expressed K17777: mitochondrial import inner membrane translocase subunit TIM9
16 Sobic.004G159000 cytochrome b-c1 complex subunit Rieske, mitochondrial precursor, putative, expressed K00411: UQCRFS1, RIP1, ubiquinol-cytochrome c reductase iron-sulfur subunit
17 Sobic.003G023500 syntaxin, putative, expressed K08489: syntaxin 16
18 Sobic.007G201000 methyltransferase domain containing protein, expressed -
19 Sobic.008G084100 adenylate kinase, putative, expressed K00939: adk, adenylate kinase
20 Sobic.001G061200 25.3 kDa vesicle transport protein, putative, expressed K08517: vesicle transport protein SEC22


Gene co-expression network
sample Sobic001G013200 Sobic001G013200 Sobic003G167000 Sobic003G167000 Sobic001G013200--Sobic003G167000 Sobic007G048700 Sobic007G048700 Sobic001G013200--Sobic007G048700 Sobic001G035400 Sobic001G035400 Sobic001G013200--Sobic001G035400 Sobic008G014300 Sobic008G014300 Sobic001G013200--Sobic008G014300 Sobic006G203900 Sobic006G203900 Sobic001G013200--Sobic006G203900 Sobic009G112900 Sobic009G112900 Sobic001G013200--Sobic009G112900 Sobic003G131300 Sobic003G131300 Sobic001G013200--Sobic003G131300 Sobic010G197900 Sobic010G197900 Sobic001G013200--Sobic010G197900 Sobic007G003100 Sobic007G003100 Sobic001G013200--Sobic007G003100 Sobic003G167000--Sobic007G048700 Sobic001G347700 Sobic001G347700 Sobic003G167000--Sobic001G347700 Sobic003G167000--Sobic001G013200 Sobic003G167000--Sobic007G003100 Sobic009G218000 Sobic009G218000 Sobic003G167000--Sobic009G218000 Sobic003G274200 Sobic003G274200 Sobic003G167000--Sobic003G274200 Sobic003G113400 Sobic003G113400 Sobic003G167000--Sobic003G113400 Sobic003G190600 Sobic003G190600 Sobic003G167000--Sobic003G190600 Sobic006G153200 Sobic006G153200 Sobic003G167000--Sobic006G153200 Sobic007G048700--Sobic003G167000 Sobic002G070300 Sobic002G070300 Sobic007G048700--Sobic002G070300 Sobic007G048700--Sobic001G035400 Sobic009G220000 Sobic009G220000 Sobic007G048700--Sobic009G220000 Sobic007G048700--Sobic007G003100 Sobic007G048700--Sobic001G347700 Sobic008G132200 Sobic008G132200 Sobic007G048700--Sobic008G132200 Sobic001G343000 Sobic001G343000 Sobic007G048700--Sobic001G343000 Sobic007G048700--Sobic001G013200 Sobic004G344800 Sobic004G344800 Sobic001G035400--Sobic004G344800 Sobic001G035400--Sobic006G203900 Sobic008G084100 Sobic008G084100 Sobic001G035400--Sobic008G084100 Sobic007G092100 Sobic007G092100 Sobic001G035400--Sobic007G092100 Sobic009G164700 Sobic009G164700 Sobic001G035400--Sobic009G164700 Sobic002G087000 Sobic002G087000 Sobic001G035400--Sobic002G087000 Sobic001G073600 Sobic001G073600 Sobic001G035400--Sobic001G073600 Sobic001G443200 Sobic001G443200 Sobic001G035400--Sobic001G443200 Sobic001G116000 Sobic001G116000 Sobic001G035400--Sobic001G116000 Sobic008G014300--Sobic001G013200 Sobic008G014300--Sobic003G167000 Sobic002G217500 Sobic002G217500 Sobic008G014300--Sobic002G217500 Sobic008G014300--Sobic006G203900 Sobic009G206600 Sobic009G206600 Sobic008G014300--Sobic009G206600 Sobic005G079500 Sobic005G079500 Sobic008G014300--Sobic005G079500 Sobic006G124300 Sobic006G124300 Sobic008G014300--Sobic006G124300 Sobic010G235000 Sobic010G235000 Sobic008G014300--Sobic010G235000 Sobic002G342000 Sobic002G342000 Sobic008G014300--Sobic002G342000 Sobic008G136800 Sobic008G136800 Sobic006G203900--Sobic008G136800 Sobic009G211900 Sobic009G211900 Sobic006G203900--Sobic009G211900 Sobic006G203900--Sobic001G035400 Sobic006G203900--Sobic001G073600 Sobic004G138300 Sobic004G138300 Sobic006G203900--Sobic004G138300 Sobic006G203900--Sobic006G124300 Sobic003G135600 Sobic003G135600 Sobic006G203900--Sobic003G135600 Sobic009G001900 Sobic009G001900 Sobic006G203900--Sobic009G001900 Sobic007G013900 Sobic007G013900 Sobic006G203900--Sobic007G013900 Sobic008G102600 Sobic008G102600 Sobic009G112900--Sobic008G102600 Sobic001G518500 Sobic001G518500 Sobic009G112900--Sobic001G518500 Sobic001G060300 Sobic001G060300 Sobic009G112900--Sobic001G060300 Sobic002G262200 Sobic002G262200 Sobic009G112900--Sobic002G262200 Sobic008G175100 Sobic008G175100 Sobic009G112900--Sobic008G175100 Sobic004G159000 Sobic004G159000 Sobic009G112900--Sobic004G159000 Sobic003G196600 Sobic003G196600 Sobic009G112900--Sobic003G196600 Sobic001G342200 Sobic001G342200 Sobic009G112900--Sobic001G342200 Sobic010G007400 Sobic010G007400 Sobic009G112900--Sobic010G007400 Sobic004G164000 Sobic004G164000 Sobic003G131300--Sobic004G164000 Sobic003G131300--Sobic010G197900 Sobic006G094600 Sobic006G094600 Sobic003G131300--Sobic006G094600 Sobic001G126200 Sobic001G126200 Sobic003G131300--Sobic001G126200 Sobic003G131300--Sobic001G035400 Sobic003G131300--Sobic004G344800 Sobic001G036700 Sobic001G036700 Sobic003G131300--Sobic001G036700 Sobic003G131300--Sobic009G001900 Sobic007G019501 Sobic007G019501 Sobic003G131300--Sobic007G019501 Sobic010G197900--Sobic003G131300 Sobic001G367000 Sobic001G367000 Sobic010G197900--Sobic001G367000 Sobic002G401700 Sobic002G401700 Sobic010G197900--Sobic002G401700 Sobic010G197900--Sobic006G094600 Sobic010G197900--Sobic008G136800 Sobic003G374000 Sobic003G374000 Sobic010G197900--Sobic003G374000 Sobic010G197900--Sobic004G344800 Sobic010G197900--Sobic009G001900 Sobic010G197900--Sobic004G164000 Sobic004G039400 Sobic004G039400 Sobic007G003100--Sobic004G039400 Sobic007G003100--Sobic007G048700 Sobic007G003100--Sobic003G167000 Sobic007G003100--Sobic009G112900 Sobic007G003100--Sobic001G443200 Sobic007G003100--Sobic009G206600 Sobic007G003100--Sobic001G060300 Sobic007G003100--Sobic006G203900 Sobic010G040900 Sobic010G040900 Sobic007G003100--Sobic010G040900
Octagon: transcription factors


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