Gene annotation
Transcriptome id Sobic.004G159000.1,Sobic.004G159000.2
Synonym Sb04g021170
Functional annotation cytochrome b-c1 complex subunit Rieske, mitochondrial precursor, putative, expressed
UniProt A0A194YPY7 , A0A194YQ30 , Q0H635
Pfam PF00355 PF02921
Panther DB PTHR10134 PTHR10134:SF1
NCBI CDD KOG1671; Ubiquinol cytochrome c reductase, subunit RIP1
KEGG Orthology K00411; UQCRFS1, RIP1, ubiquinol-cytochrome c reductase iron-sulfur subunit
Gene Ontology GO:0016491; oxidoreductase activity GO:0008121ubiquinol-cytochrome-c reductase activity GO:0016679oxidoreductase activity, acting on diphenols and related substances as donors


Orthologs (automatic annotation)
TAIR AT5G13440 : Ubiquinol-cytochrome C reductase iron-sulfur subunit
RAP-DB (Rice) LOC_Os02g32120.1 : cytochrome b-c1 complex subunit Rieske, mitochondrial precursor, putative, expressed
MaizeGDB (Corn) Zm00025a020465 , Zm00025a011660 , Zm00025a055950
Brachypodium KQJ99636
Barley -
Wheat TraesCS2B02G305000
Populus -


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cDNA sequences
Sobic.004G159000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G013900 rickettsia 17 kDa surface antigen family protein, expressed -
2 Sobic.004G344800 NADH dehydrogenase 1 alpha subcomplex subunit 9,mitochondrial precursor, putative, expressed K03953: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 9
3 Sobic.002G262200 expressed protein -
4 Sobic.004G030000 mitochondrial ATP synthase precursor, putative, expressed -
5 Sobic.003G196600 expressed protein -
6 Sobic.002G090700 WD domain, G-beta repeat domain containing protein, expressed K14004: protein transport protein SEC13
7 Sobic.003G152900 -(PubMedID : 26976818)@dihydrolipoyl dehydrogenase 1, mitochondrial precursor, putative, expressed K00382: DLD, lpd, dihydrolipoamide dehydrogenase
8 Sobic.002G260200 - -
9 Sobic.010G007400 peptidase, T1 family, putative, expressed K02739: 20S proteasome subunit beta 2
10 Sobic.006G013000 succinate dehydrogenase subunit 3, putative, expressed K00236: SDHC, succinate dehydrogenase (ubiquinone) cytochrome b560 subunit
11 Sobic.001G031900 ras-related protein, putative, expressed K07904: Ras-related protein Rab-11A
12 Sobic.003G116600 syntaxin, putative, expressed K08488: syntaxin 7
13 Sobic.001G074700 cytochrome c oxidase-related, putative, expressed K02266: cytochrome c oxidase subunit 6a
14 Sobic.003G340700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@expressed protein -
15 Sobic.001G443200 transmembrane 9 superfamily member, putative, expressed K17087: transmembrane 9 superfamily member 3
16 Sobic.002G309700 ATP synthase delta chain, mitochondrial precursor, putative, expressed K02134: ATPeF1D, ATP5D, F-type H+-transporting ATPase subunit delta
17 Sobic.004G039400 Constitutively expressed genes(PubMedID : 24456189)@- K03257: translation initiation factor 4A
18 Sobic.001G392800 NADH dehydrogenase 1 alpha subcomplex subunit 5, putative, expressed K03949: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 5
19 Sobic.004G123000 expressed protein -
20 Sobic.009G112900 expressed protein K18170: LYRM7, complex III assembly factor LYRM7


Gene co-expression network
sample Sobic004G159000 Sobic004G159000 Sobic007G013900 Sobic007G013900 Sobic004G159000--Sobic007G013900 Sobic004G344800 Sobic004G344800 Sobic004G159000--Sobic004G344800 Sobic002G262200 Sobic002G262200 Sobic004G159000--Sobic002G262200 Sobic004G030000 Sobic004G030000 Sobic004G159000--Sobic004G030000 Sobic003G196600 Sobic003G196600 Sobic004G159000--Sobic003G196600 Sobic002G090700 Sobic002G090700 Sobic004G159000--Sobic002G090700 Sobic003G152900 Sobic003G152900 Sobic004G159000--Sobic003G152900 Sobic002G260200 Sobic002G260200 Sobic004G159000--Sobic002G260200 Sobic010G007400 Sobic010G007400 Sobic004G159000--Sobic010G007400 Sobic009G215300 Sobic009G215300 Sobic007G013900--Sobic009G215300 Sobic007G013900--Sobic004G159000 Sobic007G013900--Sobic002G260200 Sobic006G013000 Sobic006G013000 Sobic007G013900--Sobic006G013000 Sobic002G309700 Sobic002G309700 Sobic007G013900--Sobic002G309700 Sobic001G031800 Sobic001G031800 Sobic007G013900--Sobic001G031800 Sobic004G260200 Sobic004G260200 Sobic007G013900--Sobic004G260200 Sobic002G395000 Sobic002G395000 Sobic007G013900--Sobic002G395000 Sobic008G136800 Sobic008G136800 Sobic007G013900--Sobic008G136800 Sobic001G073600 Sobic001G073600 Sobic004G344800--Sobic001G073600 Sobic003G135600 Sobic003G135600 Sobic004G344800--Sobic003G135600 Sobic004G344800--Sobic004G159000 Sobic001G035400 Sobic001G035400 Sobic004G344800--Sobic001G035400 Sobic009G191400 Sobic009G191400 Sobic004G344800--Sobic009G191400 Sobic004G344800--Sobic004G030000 Sobic004G344800--Sobic002G262200 Sobic002G396700 Sobic002G396700 Sobic004G344800--Sobic002G396700 Sobic001G031900 Sobic001G031900 Sobic004G344800--Sobic001G031900 Sobic002G262200--Sobic004G159000 Sobic009G224400 Sobic009G224400 Sobic002G262200--Sobic009G224400 Sobic002G262200--Sobic002G395000 Sobic002G262200--Sobic003G135600 Sobic002G262200--Sobic004G344800 Sobic002G262200--Sobic001G073600 Sobic001G112400 Sobic001G112400 Sobic002G262200--Sobic001G112400 Sobic002G262200--Sobic007G013900 Sobic002G262200--Sobic009G191400 Sobic004G030000--Sobic003G152900 Sobic001G350600 Sobic001G350600 Sobic004G030000--Sobic001G350600 Sobic001G465800 Sobic001G465800 Sobic004G030000--Sobic001G465800 Sobic004G030000--Sobic002G309700 Sobic001G074700 Sobic001G074700 Sobic004G030000--Sobic001G074700 Sobic004G170400 Sobic004G170400 Sobic004G030000--Sobic004G170400 Sobic004G030000--Sobic010G007400 Sobic004G030000--Sobic004G344800 Sobic004G030000--Sobic004G159000 Sobic003G196600--Sobic004G159000 Sobic004G256700 Sobic004G256700 Sobic003G196600--Sobic004G256700 Sobic003G340700 Sobic003G340700 Sobic003G196600--Sobic003G340700 Sobic009G112900 Sobic009G112900 Sobic003G196600--Sobic009G112900 Sobic003G196600--Sobic004G030000 Sobic004G039400 Sobic004G039400 Sobic003G196600--Sobic004G039400 Sobic001G518500 Sobic001G518500 Sobic003G196600--Sobic001G518500 Sobic005G019100 Sobic005G019100 Sobic003G196600--Sobic005G019100 Sobic008G175100 Sobic008G175100 Sobic003G196600--Sobic008G175100 Sobic003G116600 Sobic003G116600 Sobic002G090700--Sobic003G116600 Sobic002G090700--Sobic010G007400 Sobic003G217100 Sobic003G217100 Sobic002G090700--Sobic003G217100 Sobic002G090700--Sobic004G159000 Sobic002G090700--Sobic003G152900 Sobic004G066800 Sobic004G066800 Sobic002G090700--Sobic004G066800 Sobic001G309500 Sobic001G309500 Sobic002G090700--Sobic001G309500 Sobic002G078400 Sobic002G078400 Sobic002G090700--Sobic002G078400 Sobic002G090700--Sobic001G031900 Sobic003G152900--Sobic004G030000 Sobic003G152900--Sobic001G074700 Sobic003G152900--Sobic004G170400 Sobic003G152900--Sobic001G350600 Sobic010G154700 Sobic010G154700 Sobic003G152900--Sobic010G154700 Sobic003G152900--Sobic001G031900 Sobic003G152900--Sobic002G090700 Sobic003G152900--Sobic004G159000 Sobic003G152900--Sobic004G066800 Sobic002G260200--Sobic007G013900 Sobic002G260200--Sobic006G013000 Sobic002G260200--Sobic001G031800 Sobic002G260200--Sobic004G159000 Sobic002G296200 Sobic002G296200 Sobic002G260200--Sobic002G296200 Sobic002G260200--Sobic002G262200 Sobic003G305100 Sobic003G305100 Sobic002G260200--Sobic003G305100 Sobic009G001900 Sobic009G001900 Sobic002G260200--Sobic009G001900 Sobic002G260200--Sobic004G260200 Sobic010G007400--Sobic004G030000 Sobic010G007400--Sobic002G090700 Sobic010G007400--Sobic003G116600 Sobic002G401700 Sobic002G401700 Sobic010G007400--Sobic002G401700 Sobic010G007400--Sobic004G159000 Sobic010G007400--Sobic001G031900 Sobic010G007400--Sobic007G013900 Sobic010G007400--Sobic003G152900 Sobic010G007400--Sobic001G074700
Octagon: transcription factors


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