Gene annotation
Transcriptome id Sobic.003G196600.1
Synonym Sb03g025940
Functional annotation expressed protein
UniProt C5XNT4
Pfam -
Panther DB PTHR34364:SF2 PTHR34364
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G55160 : -
RAP-DB (Rice) LOC_Os01g39780.1 : expressed protein
MaizeGDB (Corn) Zm00025a038389 , Zm00025a044740
Brachypodium KQK08424
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G159000 cytochrome b-c1 complex subunit Rieske, mitochondrial precursor, putative, expressed K00411: UQCRFS1, RIP1, ubiquinol-cytochrome c reductase iron-sulfur subunit
2 Sobic.004G256700 ZAC, putative, expressed K12486: stromal membrane-associated protein
3 Sobic.003G340700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@expressed protein -
4 Sobic.009G112900 expressed protein K18170: LYRM7, complex III assembly factor LYRM7
5 Sobic.004G030000 mitochondrial ATP synthase precursor, putative, expressed -
6 Sobic.004G039400 Constitutively expressed genes(PubMedID : 24456189)@- K03257: translation initiation factor 4A
7 Sobic.001G518500 adenylate kinase, putative, expressed K00939: adk, adenylate kinase
8 Sobic.005G019100 TRAF-type zinc finger family protein, expressed -
9 Sobic.008G175100 expressed protein K17422: large subunit ribosomal protein L41
10 Sobic.008G102600 expressed protein -
11 Sobic.001G050400 expressed protein -
12 Sobic.010G007400 peptidase, T1 family, putative, expressed K02739: 20S proteasome subunit beta 2
13 Sobic.002G401700 TRAF-type zinc finger domain-containing protein 1, putative, expressed -
14 Sobic.003G129900 dehydrogenase, putative, expressed K00030: isocitrate dehydrogenase (NAD+)
15 Sobic.004G286100 ribosomal protein L6, putative, expressed K02933: RP-L6, MRPL6, large subunit ribosomal protein L6
16 Sobic.004G344800 NADH dehydrogenase 1 alpha subcomplex subunit 9,mitochondrial precursor, putative, expressed K03953: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 9
17 Sobic.002G262200 expressed protein -
18 Sobic.001G387200 expressed protein -
19 Sobic.001G118300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@GLTP domain containing protein, putative, expressed -
20 Sobic.003G152900 -(PubMedID : 26976818)@dihydrolipoyl dehydrogenase 1, mitochondrial precursor, putative, expressed K00382: DLD, lpd, dihydrolipoamide dehydrogenase


Gene co-expression network
sample Sobic003G196600 Sobic003G196600 Sobic004G159000 Sobic004G159000 Sobic003G196600--Sobic004G159000 Sobic004G256700 Sobic004G256700 Sobic003G196600--Sobic004G256700 Sobic003G340700 Sobic003G340700 Sobic003G196600--Sobic003G340700 Sobic009G112900 Sobic009G112900 Sobic003G196600--Sobic009G112900 Sobic004G030000 Sobic004G030000 Sobic003G196600--Sobic004G030000 Sobic004G039400 Sobic004G039400 Sobic003G196600--Sobic004G039400 Sobic001G518500 Sobic001G518500 Sobic003G196600--Sobic001G518500 Sobic005G019100 Sobic005G019100 Sobic003G196600--Sobic005G019100 Sobic008G175100 Sobic008G175100 Sobic003G196600--Sobic008G175100 Sobic007G013900 Sobic007G013900 Sobic004G159000--Sobic007G013900 Sobic004G344800 Sobic004G344800 Sobic004G159000--Sobic004G344800 Sobic002G262200 Sobic002G262200 Sobic004G159000--Sobic002G262200 Sobic004G159000--Sobic004G030000 Sobic004G159000--Sobic003G196600 Sobic002G090700 Sobic002G090700 Sobic004G159000--Sobic002G090700 Sobic003G152900 Sobic003G152900 Sobic004G159000--Sobic003G152900 Sobic002G260200 Sobic002G260200 Sobic004G159000--Sobic002G260200 Sobic010G007400 Sobic010G007400 Sobic004G159000--Sobic010G007400 Sobic003G129900 Sobic003G129900 Sobic004G256700--Sobic003G129900 Sobic004G256700--Sobic005G019100 Sobic001G387200 Sobic001G387200 Sobic004G256700--Sobic001G387200 Sobic006G120900 Sobic006G120900 Sobic004G256700--Sobic006G120900 Sobic004G093600 Sobic004G093600 Sobic004G256700--Sobic004G093600 Sobic004G256700--Sobic003G196600 Sobic003G274200 Sobic003G274200 Sobic004G256700--Sobic003G274200 Sobic004G173700 Sobic004G173700 Sobic004G256700--Sobic004G173700 Sobic004G256700--Sobic001G518500 Sobic003G340700--Sobic004G159000 Sobic003G340700--Sobic004G030000 Sobic003G340700--Sobic003G196600 Sobic001G031900 Sobic001G031900 Sobic003G340700--Sobic001G031900 Sobic003G340700--Sobic003G152900 Sobic004G170400 Sobic004G170400 Sobic003G340700--Sobic004G170400 Sobic001G350600 Sobic001G350600 Sobic003G340700--Sobic001G350600 Sobic008G102600 Sobic008G102600 Sobic003G340700--Sobic008G102600 Sobic003G340700--Sobic009G112900 Sobic009G112900--Sobic008G102600 Sobic009G112900--Sobic001G518500 Sobic001G060300 Sobic001G060300 Sobic009G112900--Sobic001G060300 Sobic009G112900--Sobic002G262200 Sobic009G112900--Sobic008G175100 Sobic009G112900--Sobic004G159000 Sobic009G112900--Sobic003G196600 Sobic001G342200 Sobic001G342200 Sobic009G112900--Sobic001G342200 Sobic009G112900--Sobic010G007400 Sobic004G030000--Sobic003G152900 Sobic004G030000--Sobic001G350600 Sobic001G465800 Sobic001G465800 Sobic004G030000--Sobic001G465800 Sobic002G309700 Sobic002G309700 Sobic004G030000--Sobic002G309700 Sobic001G074700 Sobic001G074700 Sobic004G030000--Sobic001G074700 Sobic004G030000--Sobic004G170400 Sobic004G030000--Sobic010G007400 Sobic004G030000--Sobic004G344800 Sobic004G030000--Sobic004G159000 Sobic001G008100 Sobic001G008100 Sobic004G039400--Sobic001G008100 Sobic001G073600 Sobic001G073600 Sobic004G039400--Sobic001G073600 Sobic010G040900 Sobic010G040900 Sobic004G039400--Sobic010G040900 Sobic001G443200 Sobic001G443200 Sobic004G039400--Sobic001G443200 Sobic004G039400--Sobic002G262200 Sobic009G191400 Sobic009G191400 Sobic004G039400--Sobic009G191400 Sobic004G039400--Sobic004G344800 Sobic004G039400--Sobic001G387200 Sobic002G079700 Sobic002G079700 Sobic004G039400--Sobic002G079700 Sobic001G518500--Sobic009G112900 Sobic001G518500--Sobic003G129900 Sobic009G224400 Sobic009G224400 Sobic001G518500--Sobic009G224400 Sobic001G518500--Sobic005G019100 Sobic001G518500--Sobic001G387200 Sobic001G518500--Sobic004G039400 Sobic001G518500--Sobic002G262200 Sobic001G518500--Sobic002G079700 Sobic007G171500 Sobic007G171500 Sobic001G518500--Sobic007G171500 Sobic005G019100--Sobic003G129900 Sobic005G019100--Sobic004G256700 Sobic005G019100--Sobic001G387200 Sobic005G019100--Sobic006G120900 Sobic005G019100--Sobic004G173700 Sobic005G019100--Sobic001G518500 Sobic001G408400 Sobic001G408400 Sobic005G019100--Sobic001G408400 Sobic003G137600 Sobic003G137600 Sobic005G019100--Sobic003G137600 Sobic007G219500 Sobic007G219500 Sobic005G019100--Sobic007G219500 Sobic008G175100--Sobic009G112900 Sobic008G175100--Sobic001G518500 Sobic008G175100--Sobic003G196600 Sobic008G175100--Sobic008G102600 Sobic007G019100 Sobic007G019100 Sobic008G175100--Sobic007G019100 Sobic008G175100--Sobic001G342200 Sobic006G124300 Sobic006G124300 Sobic008G175100--Sobic006G124300 Sobic004G286100 Sobic004G286100 Sobic008G175100--Sobic004G286100 Sobic001G112400 Sobic001G112400 Sobic008G175100--Sobic001G112400
Octagon: transcription factors


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