Gene annotation
| Transcriptome id | Sobic.005G019100.1 |
|---|---|
| Synonym | Sb05g001630 |
| Functional annotation | TRAF-type zinc finger family protein, expressed |
| UniProt | C5Y3M6 |
| Pfam | PF02176 |
| Panther DB | PTHR10131 PTHR10131:SF78 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT3G11950 : TRAF-like superfamily protein |
|---|---|
| RAP-DB (Rice) | LOC_Os05g23950.1 : TRAF-type zinc finger family protein, expressed |
| MaizeGDB (Corn) | Zm00025a033356 , Zm00025a013148 |
| Brachypodium | - |
| Barley | HORVU7Hr1G115910.5 , HORVU7Hr1G115920.17 , HORVU7Hr1G115920.16 , HORVU7Hr1G115920.15 , HORVU7Hr1G115920.14 , HORVU7Hr1G115920.13 , HORVU7Hr1G115920.12 , HORVU7Hr1G115920.11 , HORVU7Hr1G115920.10 , HORVU7Hr1G115920.19 , HORVU7Hr1G115920.18 , HORVU7Hr1G115920.22 , HORVU7Hr1G115920.23 , HORVU7Hr1G115920.20 , HORVU7Hr1G115920.21 , HORVU7Hr1G115910.4 , HORVU7Hr1G115910.2 , HORVU7Hr1G115910.3 , HORVU7Hr1G115910.1 , HORVU7Hr1G115920.9 , HORVU7Hr1G115920.8 , HORVU7Hr1G115920.7 , HORVU7Hr1G115920.6 , HORVU7Hr1G115920.5 , HORVU7Hr1G115920.4 , HORVU7Hr1G115920.3 , HORVU7Hr1G115920.2 , HORVU7Hr1G115920.1 |
| Wheat | TraesCS7B02G437000 , TraesCS7D02G510300 , TraesCS7B02G436900 , TraesCS7A02G520500 , TraesCS7D02G510200 , TraesCS7A02G520600 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.003G129900 | dehydrogenase, putative, expressed | K00030: isocitrate dehydrogenase (NAD+) |
| 2 | Sobic.004G256700 | ZAC, putative, expressed | K12486: stromal membrane-associated protein |
| 3 | Sobic.001G387200 | expressed protein | - |
| 4 | Sobic.006G120900 | dehydrogenase, putative, expressed | K00030: isocitrate dehydrogenase (NAD+) |
| 5 | Sobic.004G173700 | SLL1 protein, putative, expressed | - |
| 6 | Sobic.001G518500 | adenylate kinase, putative, expressed | K00939: adk, adenylate kinase |
| 7 | Sobic.001G408400 | phosphatase, putative, expressed | K07252: dolichyldiphosphatase |
| 8 | Sobic.003G137600 | CHIT10 - Chitinase family protein precursor, expressed | - |
| 9 | Sobic.007G219500 | tentative name(PubMedID : 31536532)@core histone H2A/H2B/H3/H4, putative, expressed | - |
| 10 | Sobic.003G380300 | cytochrome c, putative, expressed | K08738: cytochrome c |
| 11 | Sobic.003G196600 | expressed protein | - |
| 12 | Sobic.004G093600 | 2-oxo acid dehydrogenases acyltransferase domain containing protein, expressed | K00627: DLAT, aceF, pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase) |
| 13 | Sobic.003G274200 | 5-nucleotidase surE, putative, expressed | K03787: 5'-nucleotidase |
| 14 | Sobic.001G118300 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@GLTP domain containing protein, putative, expressed | - |
| 15 | Sobic.002G420600 | nucleoside-triphosphatase, putative, expressed | - |
| 16 | Sobic.003G139200 | - | - |
| 17 | Sobic.002G228900 | RNA recognition motif containing protein, putative, expressed | - |
| 18 | Sobic.004G159000 | cytochrome b-c1 complex subunit Rieske, mitochondrial precursor, putative, expressed | K00411: UQCRFS1, RIP1, ubiquinol-cytochrome c reductase iron-sulfur subunit |
| 19 | Sobic.003G005100 | seven in absentia protein family domain containing protein, expressed | K04506: E3 ubiquitin-protein ligase SIAH1 |
| 20 | Sobic.002G259700 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transketolase, putative, expressed | K00162: PDHB, pyruvate dehydrogenase E1 component beta subunit |
Gene co-expression network
Octagon: transcription factors
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