Gene annotation
Transcriptome id Sobic.003G005100.1
Synonym Sb03g000630
Functional annotation seven in absentia protein family domain containing protein, expressed
UniProt C5XJK7
Pfam PF03145
Panther DB PTHR10315 PTHR10315:SF39
NCBI CDD KOG3002; Zn finger protein
KEGG Orthology K04506; E3 ubiquitin-protein ligase SIAH1
Gene Ontology GO:0007275; multicellular organism development GO:0006511ubiquitin-dependent protein catabolic process GO:0005634nucleus


Orthologs (automatic annotation)
TAIR AT3G61790 : Protein with RING/U-box and TRAF-like domains
RAP-DB (Rice) LOC_Os01g13370.1 : seven in absentia protein family domain containing protein, expressed
MaizeGDB (Corn) Zm00025a043224 , Zm00025a034326 , Zm00025a019742 , Zm00025a022801
Brachypodium KQK06945 , KQK03465
Barley HORVU3Hr1G032110.6 , HORVU3Hr1G032110.7 , HORVU3Hr1G032110.4 , HORVU3Hr1G032110.5 , HORVU7Hr1G082100.2 , HORVU7Hr1G082100.1 , HORVU3Hr1G032110.3 , HORVU3Hr1G032110.2 , HORVU3Hr1G032110.1 , HORVU3Hr1G032110.8 , HORVU3Hr1G032110.9 , HORVU1Hr1G033130.11 , HORVU1Hr1G033130.10 , HORVU1Hr1G033130.13 , HORVU1Hr1G033130.12 , HORVU1Hr1G033130.15 , HORVU1Hr1G033130.14 , HORVU1Hr1G033130.16 , HORVU1Hr1G033130.8 , HORVU1Hr1G033130.5 , HORVU1Hr1G033130.4 , HORVU1Hr1G033130.7 , HORVU1Hr1G033130.6 , HORVU1Hr1G033130.1 , HORVU1Hr1G033130.3 , HORVU1Hr1G033130.2 , HORVU1Hr1G033130.9
Wheat TraesCS3A02G158000 , TraesCS7A02G332700 , TraesCS7B02G244800 , TraesCS2A02G129000 , TraesCS1D02G134000 , TraesCS3B02G185000 , TraesCS3D02G165600 , TraesCS7D02G340900 , TraesCS1A02G136400 , TraesCS1A02G136400 , TraesCS1B02G152800
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.003G005100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G113200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
2 Sobic.003G212000 OsCML12 - Calmodulin-related calcium sensor protein, expressed K13448: calcium-binding protein CML
3 Sobic.006G252400 S4 domain containing protein, putative, expressed K14560: U3 small nucleolar ribonucleoprotein protein IMP3
4 Sobic.003G284100 expressed protein -
5 Sobic.010G161000 Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.26 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07198: PRKAA, 5'-AMP-activated protein kinase, catalytic alpha subunit
6 Sobic.003G234500 CA(PubMedID : 19549309)@carbonic anhydrase(PubMedID : 26904072)@-(PubMedID : 26976818)@carbonic anhydrase, chloroplast precursor, putative, expressed K01673: cynT, carbonic anhydrase
7 Sobic.003G353700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@MYB family transcription factor, putative, expressed -
8 Sobic.007G219500 tentative name(PubMedID : 31536532)@core histone H2A/H2B/H3/H4, putative, expressed -
9 Sobic.004G259300 Zinc finger C-x8-C-x5-C-x3-H type domain containing protein, expressed K15687: E3 ubiquitin-protein ligase makorin
10 Sobic.009G157800 transporter family protein, putative, expressed -
11 Sobic.007G077532 - K08597: SENP8, NEDP1, sentrin-specific protease 8
12 Sobic.004G141400 START domain containing protein, putative, expressed -
13 Sobic.001G024400 pectinesterase inhibitor domain containing protein, expressed -
14 Sobic.010G181600 WD domain, G-beta repeat domain containing protein, expressed K13137: STRAP, serine-threonine kinase receptor-associated protein
15 Sobic.002G389600 transcription regulator, putative, expressed -
16 Sobic.007G039200 MYB family transcription factor, putative, expressed -
17 Sobic.009G189700 - -
18 Sobic.008G071300 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
19 Sobic.003G130700 zinc finger, C3HC4 type domain containing protein, expressed K11982: E3 ubiquitin-protein ligase RNF115/126
20 Sobic.007G192400 zinc ion binding protein, putative, expressed K15196: BRF1, transcription factor IIIB 90 kDa subunit


Gene co-expression network
sample Sobic003G005100 Sobic003G005100 Sobic002G113200 Sobic002G113200 Sobic003G005100--Sobic002G113200 Sobic003G212000 Sobic003G212000 Sobic003G005100--Sobic003G212000 Sobic006G252400 Sobic006G252400 Sobic003G005100--Sobic006G252400 Sobic003G284100 Sobic003G284100 Sobic003G005100--Sobic003G284100 Sobic010G161000 Sobic010G161000 Sobic003G005100--Sobic010G161000 Sobic003G234500 Sobic003G234500 Sobic003G005100--Sobic003G234500 Sobic003G353700 Sobic003G353700 Sobic003G005100--Sobic003G353700 Sobic007G219500 Sobic007G219500 Sobic003G005100--Sobic007G219500 Sobic004G259300 Sobic004G259300 Sobic003G005100--Sobic004G259300 Sobic002G113200--Sobic003G212000 Sobic008G071300 Sobic008G071300 Sobic002G113200--Sobic008G071300 Sobic002G113200--Sobic003G234500 Sobic009G157800 Sobic009G157800 Sobic002G113200--Sobic009G157800 Sobic004G279200 Sobic004G279200 Sobic002G113200--Sobic004G279200 Sobic001G503600 Sobic001G503600 Sobic002G113200--Sobic001G503600 Sobic006G267100 Sobic006G267100 Sobic002G113200--Sobic006G267100 Sobic002G113200--Sobic003G284100 Sobic010G043250 Sobic010G043250 Sobic002G113200--Sobic010G043250 Sobic003G212000--Sobic003G234500 Sobic003G212000--Sobic008G071300 Sobic003G212000--Sobic002G113200 Sobic003G212000--Sobic006G267100 Sobic009G189700 Sobic009G189700 Sobic003G212000--Sobic009G189700 Sobic005G144000 Sobic005G144000 Sobic003G212000--Sobic005G144000 Sobic003G212000--Sobic001G503600 Sobic002G389600 Sobic002G389600 Sobic003G212000--Sobic002G389600 Sobic002G170100 Sobic002G170100 Sobic003G212000--Sobic002G170100 Sobic006G252400--Sobic003G005100 Sobic004G127300 Sobic004G127300 Sobic006G252400--Sobic004G127300 Sobic007G192400 Sobic007G192400 Sobic006G252400--Sobic007G192400 Sobic006G252400--Sobic002G113200 Sobic006G252400--Sobic004G259300 Sobic003G213000 Sobic003G213000 Sobic006G252400--Sobic003G213000 Sobic007G184800 Sobic007G184800 Sobic006G252400--Sobic007G184800 Sobic008G036600 Sobic008G036600 Sobic006G252400--Sobic008G036600 Sobic010G260900 Sobic010G260900 Sobic006G252400--Sobic010G260900 Sobic003G284100--Sobic003G212000 Sobic003G284100--Sobic002G113200 Sobic003G013700 Sobic003G013700 Sobic003G284100--Sobic003G013700 Sobic003G089100 Sobic003G089100 Sobic003G284100--Sobic003G089100 Sobic006G070564 Sobic006G070564 Sobic003G284100--Sobic006G070564 Sobic003G284100--Sobic004G279200 Sobic004G247500 Sobic004G247500 Sobic003G284100--Sobic004G247500 Sobic003G284100--Sobic009G157800 Sobic003G137600 Sobic003G137600 Sobic003G284100--Sobic003G137600 Sobic004G217100 Sobic004G217100 Sobic010G161000--Sobic004G217100 Sobic003G351200 Sobic003G351200 Sobic010G161000--Sobic003G351200 Sobic003G441000 Sobic003G441000 Sobic010G161000--Sobic003G441000 Sobic010G161000--Sobic005G144000 Sobic001G039100 Sobic001G039100 Sobic010G161000--Sobic001G039100 Sobic002G382300 Sobic002G382300 Sobic010G161000--Sobic002G382300 Sobic010G161000--Sobic006G070564 Sobic002G404600 Sobic002G404600 Sobic010G161000--Sobic002G404600 Sobic004G318900 Sobic004G318900 Sobic010G161000--Sobic004G318900 Sobic003G234500--Sobic003G212000 Sobic003G234500--Sobic008G071300 Sobic003G234500--Sobic006G267100 Sobic003G234500--Sobic005G144000 Sobic003G234500--Sobic002G170100 Sobic003G234500--Sobic009G189700 Sobic004G180100 Sobic004G180100 Sobic003G234500--Sobic004G180100 Sobic008G122800 Sobic008G122800 Sobic003G234500--Sobic008G122800 Sobic003G110932 Sobic003G110932 Sobic003G234500--Sobic003G110932 Sobic003G353700--Sobic007G192400 Sobic003G353700--Sobic008G036600 Sobic005G063200 Sobic005G063200 Sobic003G353700--Sobic005G063200 Sobic001G024400 Sobic001G024400 Sobic003G353700--Sobic001G024400 Sobic007G039200 Sobic007G039200 Sobic003G353700--Sobic007G039200 Sobic010G181600 Sobic010G181600 Sobic003G353700--Sobic010G181600 Sobic003G236000 Sobic003G236000 Sobic003G353700--Sobic003G236000 Sobic004G074600 Sobic004G074600 Sobic003G353700--Sobic004G074600 Sobic008G006000 Sobic008G006000 Sobic003G353700--Sobic008G006000 Sobic007G219500--Sobic002G113200 Sobic007G219500--Sobic003G284100 Sobic004G173700 Sobic004G173700 Sobic007G219500--Sobic004G173700 Sobic007G219500--Sobic003G005100 Sobic008G188400 Sobic008G188400 Sobic007G219500--Sobic008G188400 Sobic007G219500--Sobic003G212000 Sobic010G159000 Sobic010G159000 Sobic007G219500--Sobic010G159000 Sobic005G019100 Sobic005G019100 Sobic007G219500--Sobic005G019100 Sobic004G247700 Sobic004G247700 Sobic007G219500--Sobic004G247700 Sobic004G218300 Sobic004G218300 Sobic004G259300--Sobic004G218300 Sobic004G141400 Sobic004G141400 Sobic004G259300--Sobic004G141400 Sobic004G259300--Sobic007G192400 Sobic003G250400 Sobic003G250400 Sobic004G259300--Sobic003G250400 Sobic004G259300--Sobic007G184800 Sobic004G259300--Sobic003G005100 Sobic007G077532 Sobic007G077532 Sobic004G259300--Sobic007G077532 Sobic007G177500 Sobic007G177500 Sobic004G259300--Sobic007G177500 Sobic004G259300--Sobic008G006000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.