Gene annotation
Transcriptome id Sobic.003G130700.1
Synonym Sb03g011120, ATCRT1
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt C5XH92
Pfam PF14369 PF13639
Panther DB PTHR22763 PTHR22763:SF75
NCBI CDD -
KEGG Orthology K11982; E3 ubiquitin-protein ligase RNF115/126
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT5G56340 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os01g16950.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a035204 , Zm00025a024133
Brachypodium PNT70338 , KQK03896
Barley HORVU3Hr1G039220.4 , HORVU3Hr1G039220.1 , HORVU3Hr1G039220.3 , HORVU3Hr1G039220.2
Wheat -
Populus -


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cDNA sequences
Sobic.003G130700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G005100 seven in absentia protein family domain containing protein, expressed K04506: E3 ubiquitin-protein ligase SIAH1
2 Sobic.003G137600 CHIT10 - Chitinase family protein precursor, expressed -
3 Sobic.006G252400 S4 domain containing protein, putative, expressed K14560: U3 small nucleolar ribonucleoprotein protein IMP3
4 Sobic.003G274200 5-nucleotidase surE, putative, expressed K03787: 5'-nucleotidase
5 Sobic.002G228900 RNA recognition motif containing protein, putative, expressed -
6 Sobic.008G141600 expressed protein -
7 Sobic.003G212000 OsCML12 - Calmodulin-related calcium sensor protein, expressed K13448: calcium-binding protein CML
8 Sobic.002G113200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
9 Sobic.003G284100 expressed protein -
10 Sobic.006G118400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@gibberellin 20 oxidase 2, putative, expressed -
11 Sobic.006G045100 - -
12 Sobic.004G247700 expressed protein -
13 Sobic.003G234500 CA(PubMedID : 19549309)@carbonic anhydrase(PubMedID : 26904072)@-(PubMedID : 26976818)@carbonic anhydrase, chloroplast precursor, putative, expressed K01673: cynT, carbonic anhydrase
14 Sobic.009G157800 transporter family protein, putative, expressed -
15 Sobic.010G161000 Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.26 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07198: PRKAA, 5'-AMP-activated protein kinase, catalytic alpha subunit
16 Sobic.001G482800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@ZIM domain containing protein, putative, expressed K13464: jasmonate ZIM domain-containing protein
17 Sobic.001G365700 OsRhmbd13 - Putative Rhomboid homologue, expressed -
18 Sobic.001G408400 phosphatase, putative, expressed K07252: dolichyldiphosphatase
19 Sobic.003G139200 - -
20 Sobic.004G173700 SLL1 protein, putative, expressed -


Gene co-expression network
sample Sobic003G130700 Sobic003G130700 Sobic003G005100 Sobic003G005100 Sobic003G130700--Sobic003G005100 Sobic003G137600 Sobic003G137600 Sobic003G130700--Sobic003G137600 Sobic006G252400 Sobic006G252400 Sobic003G130700--Sobic006G252400 Sobic003G274200 Sobic003G274200 Sobic003G130700--Sobic003G274200 Sobic002G228900 Sobic002G228900 Sobic003G130700--Sobic002G228900 Sobic008G141600 Sobic008G141600 Sobic003G130700--Sobic008G141600 Sobic003G212000 Sobic003G212000 Sobic003G130700--Sobic003G212000 Sobic002G113200 Sobic002G113200 Sobic003G130700--Sobic002G113200 Sobic003G284100 Sobic003G284100 Sobic003G130700--Sobic003G284100 Sobic003G005100--Sobic002G113200 Sobic003G005100--Sobic003G212000 Sobic003G005100--Sobic006G252400 Sobic003G005100--Sobic003G284100 Sobic010G161000 Sobic010G161000 Sobic003G005100--Sobic010G161000 Sobic003G234500 Sobic003G234500 Sobic003G005100--Sobic003G234500 Sobic003G353700 Sobic003G353700 Sobic003G005100--Sobic003G353700 Sobic007G219500 Sobic007G219500 Sobic003G005100--Sobic007G219500 Sobic004G259300 Sobic004G259300 Sobic003G005100--Sobic004G259300 Sobic004G173700 Sobic004G173700 Sobic003G137600--Sobic004G173700 Sobic003G137600--Sobic003G212000 Sobic003G137600--Sobic003G234500 Sobic006G120900 Sobic006G120900 Sobic003G137600--Sobic006G120900 Sobic003G137600--Sobic002G113200 Sobic001G365700 Sobic001G365700 Sobic003G137600--Sobic001G365700 Sobic007G212100 Sobic007G212100 Sobic003G137600--Sobic007G212100 Sobic003G137600--Sobic003G284100 Sobic009G189700 Sobic009G189700 Sobic003G137600--Sobic009G189700 Sobic006G252400--Sobic003G005100 Sobic004G127300 Sobic004G127300 Sobic006G252400--Sobic004G127300 Sobic007G192400 Sobic007G192400 Sobic006G252400--Sobic007G192400 Sobic006G252400--Sobic002G113200 Sobic006G252400--Sobic004G259300 Sobic003G213000 Sobic003G213000 Sobic006G252400--Sobic003G213000 Sobic007G184800 Sobic007G184800 Sobic006G252400--Sobic007G184800 Sobic008G036600 Sobic008G036600 Sobic006G252400--Sobic008G036600 Sobic010G260900 Sobic010G260900 Sobic006G252400--Sobic010G260900 Sobic003G089100 Sobic003G089100 Sobic003G274200--Sobic003G089100 Sobic003G129900 Sobic003G129900 Sobic003G274200--Sobic003G129900 Sobic003G274200--Sobic002G228900 Sobic003G260600 Sobic003G260600 Sobic003G274200--Sobic003G260600 Sobic002G420600 Sobic002G420600 Sobic003G274200--Sobic002G420600 Sobic001G387200 Sobic001G387200 Sobic003G274200--Sobic001G387200 Sobic003G167000 Sobic003G167000 Sobic003G274200--Sobic003G167000 Sobic002G255400 Sobic002G255400 Sobic003G274200--Sobic002G255400 Sobic007G014700 Sobic007G014700 Sobic003G274200--Sobic007G014700 Sobic002G228900--Sobic004G173700 Sobic002G228900--Sobic002G113200 Sobic002G228900--Sobic003G212000 Sobic002G228900--Sobic003G284100 Sobic002G228900--Sobic003G234500 Sobic002G228900--Sobic003G137600 Sobic002G228900--Sobic003G089100 Sobic009G157800 Sobic009G157800 Sobic002G228900--Sobic009G157800 Sobic002G228900--Sobic002G255400 Sobic004G074900 Sobic004G074900 Sobic008G141600--Sobic004G074900 Sobic003G238250 Sobic003G238250 Sobic008G141600--Sobic003G238250 Sobic002G368100 Sobic002G368100 Sobic008G141600--Sobic002G368100 Sobic007G101600 Sobic007G101600 Sobic008G141600--Sobic007G101600 Sobic010G006800 Sobic010G006800 Sobic008G141600--Sobic010G006800 Sobic001G490950 Sobic001G490950 Sobic008G141600--Sobic001G490950 Sobic002G102300 Sobic002G102300 Sobic008G141600--Sobic002G102300 Sobic006G267100 Sobic006G267100 Sobic008G141600--Sobic006G267100 Sobic007G138000 Sobic007G138000 Sobic008G141600--Sobic007G138000 Sobic003G212000--Sobic003G234500 Sobic008G071300 Sobic008G071300 Sobic003G212000--Sobic008G071300 Sobic003G212000--Sobic002G113200 Sobic003G212000--Sobic006G267100 Sobic003G212000--Sobic009G189700 Sobic005G144000 Sobic005G144000 Sobic003G212000--Sobic005G144000 Sobic001G503600 Sobic001G503600 Sobic003G212000--Sobic001G503600 Sobic002G389600 Sobic002G389600 Sobic003G212000--Sobic002G389600 Sobic002G170100 Sobic002G170100 Sobic003G212000--Sobic002G170100 Sobic002G113200--Sobic003G212000 Sobic002G113200--Sobic008G071300 Sobic002G113200--Sobic003G234500 Sobic002G113200--Sobic009G157800 Sobic004G279200 Sobic004G279200 Sobic002G113200--Sobic004G279200 Sobic002G113200--Sobic001G503600 Sobic002G113200--Sobic006G267100 Sobic002G113200--Sobic003G284100 Sobic010G043250 Sobic010G043250 Sobic002G113200--Sobic010G043250 Sobic003G284100--Sobic003G212000 Sobic003G284100--Sobic002G113200 Sobic003G013700 Sobic003G013700 Sobic003G284100--Sobic003G013700 Sobic003G284100--Sobic003G089100 Sobic006G070564 Sobic006G070564 Sobic003G284100--Sobic006G070564 Sobic003G284100--Sobic004G279200 Sobic004G247500 Sobic004G247500 Sobic003G284100--Sobic004G247500 Sobic003G284100--Sobic009G157800 Sobic003G284100--Sobic003G137600
Octagon: transcription factors


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