Gene annotation
Transcriptome id Sobic.001G482800.1
Synonym JAZ, TIFY3B, JAZ12, Sb01g045190
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
tran- scriptional repressor JASMONATE ZIM-DOMAIN (PubMedID : 25711704)
ZIM domain containing protein, putative, expressed
UniProt C5WVS8
Pfam PF09425 PF06200
Panther DB PTHR33077 PTHR33077:SF1
NCBI CDD -
KEGG Orthology K13464; jasmonate ZIM domain-containing protein
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G20900 : jasmonate-zim-domain protein 12
RAP-DB (Rice) LOC_Os03g08310.1 : ZIM domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a053284 , Zm00025a047140 , Zm00025a000926
Brachypodium KQK23310 , KQK23311
Barley HORVU4Hr1G076820.1 , HORVU4Hr1G076820.2
Wheat -
Populus -


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cDNA sequences
Sobic.001G482800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G247700 expressed protein -
2 Sobic.003G335300 E2F-related protein, putative, expressed -
3 Sobic.001G365700 OsRhmbd13 - Putative Rhomboid homologue, expressed -
4 Sobic.004G232500 dnaJ homolog subfamily C member 7, putative, expressed K09527: DnaJ homolog subfamily C member 7
5 Sobic.008G188400 GNS1/SUR4 membrane family protein, putative, expressed -
6 Sobic.003G137600 CHIT10 - Chitinase family protein precursor, expressed -
7 Sobic.006G118400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@gibberellin 20 oxidase 2, putative, expressed -
8 Sobic.004G247500 "HD-zip transcription factor, ortholog of sihdz02 of foxtail millet (Setaria italica L.)"(PubMedID : 29862293)@caleosin related protein, putative, expressed K17991: peroxygenase
9 Sobic.003G284100 expressed protein -
10 Sobic.010G216400 expressed protein -
11 Sobic.004G173700 SLL1 protein, putative, expressed -
12 Sobic.003G273000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@hydrolase, putative, expressed K14664: IAA-amino acid hydrolase
13 Sobic.007G138100 zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed -
14 Sobic.003G212000 OsCML12 - Calmodulin-related calcium sensor protein, expressed K13448: calcium-binding protein CML
15 Sobic.009G176400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
16 Sobic.001G408400 phosphatase, putative, expressed K07252: dolichyldiphosphatase
17 Sobic.006G230400 diacylglycerol kinase, putative, expressed K00901: dgkA, diacylglycerol kinase (ATP)
18 Sobic.004G088900 syntaxin-related protein, putative, expressed K08486: syntaxin 1B/2/3
19 Sobic.003G380300 cytochrome c, putative, expressed K08738: cytochrome c
20 Sobic.009G157800 transporter family protein, putative, expressed -


Gene co-expression network
sample Sobic001G482800 Sobic001G482800 Sobic004G247700 Sobic004G247700 Sobic001G482800--Sobic004G247700 Sobic003G335300 Sobic003G335300 Sobic001G482800--Sobic003G335300 Sobic001G365700 Sobic001G365700 Sobic001G482800--Sobic001G365700 Sobic004G232500 Sobic004G232500 Sobic001G482800--Sobic004G232500 Sobic008G188400 Sobic008G188400 Sobic001G482800--Sobic008G188400 Sobic003G137600 Sobic003G137600 Sobic001G482800--Sobic003G137600 Sobic006G118400 Sobic006G118400 Sobic001G482800--Sobic006G118400 Sobic004G247500 Sobic004G247500 Sobic001G482800--Sobic004G247500 Sobic003G284100 Sobic003G284100 Sobic001G482800--Sobic003G284100 Sobic004G247700--Sobic001G482800 Sobic004G247700--Sobic008G188400 Sobic003G212000 Sobic003G212000 Sobic004G247700--Sobic003G212000 Sobic002G113200 Sobic002G113200 Sobic004G247700--Sobic002G113200 Sobic004G247700--Sobic003G137600 Sobic004G247700--Sobic001G365700 Sobic007G138100 Sobic007G138100 Sobic004G247700--Sobic007G138100 Sobic004G247700--Sobic003G284100 Sobic004G247700--Sobic004G247500 Sobic003G335300--Sobic001G365700 Sobic003G335300--Sobic001G482800 Sobic004G173700 Sobic004G173700 Sobic003G335300--Sobic004G173700 Sobic003G335300--Sobic004G232500 Sobic003G335300--Sobic003G284100 Sobic003G335300--Sobic003G137600 Sobic003G335300--Sobic006G118400 Sobic003G335300--Sobic004G247700 Sobic002G246800 Sobic002G246800 Sobic003G335300--Sobic002G246800 Sobic001G365700--Sobic003G335300 Sobic001G365700--Sobic004G173700 Sobic004G127000 Sobic004G127000 Sobic001G365700--Sobic004G127000 Sobic001G365700--Sobic003G137600 Sobic001G365700--Sobic001G482800 Sobic010G216400 Sobic010G216400 Sobic001G365700--Sobic010G216400 Sobic001G365700--Sobic003G284100 Sobic001G365700--Sobic004G232500 Sobic010G043250 Sobic010G043250 Sobic001G365700--Sobic010G043250 Sobic004G232500--Sobic003G335300 Sobic003G273000 Sobic003G273000 Sobic004G232500--Sobic003G273000 Sobic004G232500--Sobic001G482800 Sobic007G212100 Sobic007G212100 Sobic004G232500--Sobic007G212100 Sobic004G232500--Sobic008G188400 Sobic004G232500--Sobic010G216400 Sobic004G232500--Sobic001G365700 Sobic004G232500--Sobic006G118400 Sobic004G159400 Sobic004G159400 Sobic004G232500--Sobic004G159400 Sobic008G188400--Sobic004G247700 Sobic008G188400--Sobic001G482800 Sobic008G188400--Sobic004G232500 Sobic008G188400--Sobic001G365700 Sobic008G188400--Sobic003G335300 Sobic007G219500 Sobic007G219500 Sobic008G188400--Sobic007G219500 Sobic008G188400--Sobic004G173700 Sobic008G188400--Sobic003G284100 Sobic008G040400 Sobic008G040400 Sobic008G188400--Sobic008G040400 Sobic003G137600--Sobic004G173700 Sobic003G137600--Sobic003G212000 Sobic003G234500 Sobic003G234500 Sobic003G137600--Sobic003G234500 Sobic006G120900 Sobic006G120900 Sobic003G137600--Sobic006G120900 Sobic003G137600--Sobic002G113200 Sobic003G137600--Sobic001G365700 Sobic003G137600--Sobic007G212100 Sobic003G137600--Sobic003G284100 Sobic009G189700 Sobic009G189700 Sobic003G137600--Sobic009G189700 Sobic006G118400--Sobic003G273000 Sobic006G118400--Sobic004G232500 Sobic006G118400--Sobic003G335300 Sobic006G118400--Sobic001G482800 Sobic006G118400--Sobic004G159400 Sobic006G118400--Sobic001G365700 Sobic006G118400--Sobic010G216400 Sobic010G031000 Sobic010G031000 Sobic006G118400--Sobic010G031000 Sobic010G262300 Sobic010G262300 Sobic006G118400--Sobic010G262300 Sobic001G303900 Sobic001G303900 Sobic004G247500--Sobic001G303900 Sobic009G157800 Sobic009G157800 Sobic004G247500--Sobic009G157800 Sobic004G247500--Sobic009G189700 Sobic006G070564 Sobic006G070564 Sobic004G247500--Sobic006G070564 Sobic003G340000 Sobic003G340000 Sobic004G247500--Sobic003G340000 Sobic008G050900 Sobic008G050900 Sobic004G247500--Sobic008G050900 Sobic005G144000 Sobic005G144000 Sobic004G247500--Sobic005G144000 Sobic005G074300 Sobic005G074300 Sobic004G247500--Sobic005G074300 Sobic009G176600 Sobic009G176600 Sobic004G247500--Sobic009G176600 Sobic003G284100--Sobic003G212000 Sobic003G284100--Sobic002G113200 Sobic003G013700 Sobic003G013700 Sobic003G284100--Sobic003G013700 Sobic003G089100 Sobic003G089100 Sobic003G284100--Sobic003G089100 Sobic003G284100--Sobic006G070564 Sobic004G279200 Sobic004G279200 Sobic003G284100--Sobic004G279200 Sobic003G284100--Sobic004G247500 Sobic003G284100--Sobic009G157800 Sobic003G284100--Sobic003G137600
Octagon: transcription factors


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