Gene annotation
Transcriptome id Sobic.003G335300.3,Sobic.003G335300.2
Synonym Sb03g037980
Functional annotation E2F-related protein, putative, expressed
UniProt A0A1W0W063
Pfam PF04678
Panther DB PTHR13462 PTHR13462:SF19
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G09575 : Protein of unknown function (DUF607)
RAP-DB (Rice) LOC_Os01g60110.1 : E2F-related protein, putative, expressed
MaizeGDB (Corn) Zm00025a029002 , Zm00025a027086 , Zm00025a039787
Brachypodium PNT73108 , PNT73107 , KQK10314 , KQJ89492
Barley HORVU3Hr1G080370.3 , HORVU3Hr1G080370.2 , HORVU3Hr1G080370.1 , HORVU3Hr1G080370.5 , HORVU3Hr1G080370.4
Wheat TraesCS5B02G143000 , TraesCS3B02G371900 , TraesCS3A02G340300 , TraesCS3D02G333800
Populus -


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cDNA sequences
Sobic.003G335300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G365700 OsRhmbd13 - Putative Rhomboid homologue, expressed -
2 Sobic.001G482800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@ZIM domain containing protein, putative, expressed K13464: jasmonate ZIM domain-containing protein
3 Sobic.004G173700 SLL1 protein, putative, expressed -
4 Sobic.004G232500 dnaJ homolog subfamily C member 7, putative, expressed K09527: DnaJ homolog subfamily C member 7
5 Sobic.003G284100 expressed protein -
6 Sobic.003G137600 CHIT10 - Chitinase family protein precursor, expressed -
7 Sobic.006G118400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@gibberellin 20 oxidase 2, putative, expressed -
8 Sobic.004G247700 expressed protein -
9 Sobic.002G246800 acetyltransferase, GNAT family, putative, expressed K00621: GNPNAT1, glucosamine-phosphate N-acetyltransferase
10 Sobic.010G216400 expressed protein -
11 Sobic.001G408400 phosphatase, putative, expressed K07252: dolichyldiphosphatase
12 Sobic.008G188400 GNS1/SUR4 membrane family protein, putative, expressed -
13 Sobic.003G273000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@hydrolase, putative, expressed K14664: IAA-amino acid hydrolase
14 Sobic.002G420600 nucleoside-triphosphatase, putative, expressed -
15 Sobic.003G016300 SFT2, putative, expressed -
16 Sobic.007G212100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@AGC_PVPK_like_CDK8.2 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
17 Sobic.009G176400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
18 Sobic.010G231700 expressed protein -
19 Sobic.002G228900 RNA recognition motif containing protein, putative, expressed -
20 Sobic.007G219500 tentative name(PubMedID : 31536532)@core histone H2A/H2B/H3/H4, putative, expressed -


Gene co-expression network
sample Sobic003G335300 Sobic003G335300 Sobic001G365700 Sobic001G365700 Sobic003G335300--Sobic001G365700 Sobic001G482800 Sobic001G482800 Sobic003G335300--Sobic001G482800 Sobic004G173700 Sobic004G173700 Sobic003G335300--Sobic004G173700 Sobic004G232500 Sobic004G232500 Sobic003G335300--Sobic004G232500 Sobic003G284100 Sobic003G284100 Sobic003G335300--Sobic003G284100 Sobic003G137600 Sobic003G137600 Sobic003G335300--Sobic003G137600 Sobic006G118400 Sobic006G118400 Sobic003G335300--Sobic006G118400 Sobic004G247700 Sobic004G247700 Sobic003G335300--Sobic004G247700 Sobic002G246800 Sobic002G246800 Sobic003G335300--Sobic002G246800 Sobic001G365700--Sobic003G335300 Sobic001G365700--Sobic004G173700 Sobic004G127000 Sobic004G127000 Sobic001G365700--Sobic004G127000 Sobic001G365700--Sobic003G137600 Sobic001G365700--Sobic001G482800 Sobic010G216400 Sobic010G216400 Sobic001G365700--Sobic010G216400 Sobic001G365700--Sobic003G284100 Sobic001G365700--Sobic004G232500 Sobic010G043250 Sobic010G043250 Sobic001G365700--Sobic010G043250 Sobic001G482800--Sobic004G247700 Sobic001G482800--Sobic003G335300 Sobic001G482800--Sobic001G365700 Sobic001G482800--Sobic004G232500 Sobic008G188400 Sobic008G188400 Sobic001G482800--Sobic008G188400 Sobic001G482800--Sobic003G137600 Sobic001G482800--Sobic006G118400 Sobic004G247500 Sobic004G247500 Sobic001G482800--Sobic004G247500 Sobic001G482800--Sobic003G284100 Sobic004G173700--Sobic003G137600 Sobic006G120900 Sobic006G120900 Sobic004G173700--Sobic006G120900 Sobic002G420600 Sobic002G420600 Sobic004G173700--Sobic002G420600 Sobic001G387200 Sobic001G387200 Sobic004G173700--Sobic001G387200 Sobic004G173700--Sobic001G365700 Sobic003G129900 Sobic003G129900 Sobic004G173700--Sobic003G129900 Sobic007G212100 Sobic007G212100 Sobic004G173700--Sobic007G212100 Sobic001G303900 Sobic001G303900 Sobic004G173700--Sobic001G303900 Sobic008G018300 Sobic008G018300 Sobic004G173700--Sobic008G018300 Sobic004G232500--Sobic003G335300 Sobic003G273000 Sobic003G273000 Sobic004G232500--Sobic003G273000 Sobic004G232500--Sobic001G482800 Sobic004G232500--Sobic007G212100 Sobic004G232500--Sobic008G188400 Sobic004G232500--Sobic010G216400 Sobic004G232500--Sobic001G365700 Sobic004G232500--Sobic006G118400 Sobic004G159400 Sobic004G159400 Sobic004G232500--Sobic004G159400 Sobic003G212000 Sobic003G212000 Sobic003G284100--Sobic003G212000 Sobic002G113200 Sobic002G113200 Sobic003G284100--Sobic002G113200 Sobic003G013700 Sobic003G013700 Sobic003G284100--Sobic003G013700 Sobic003G089100 Sobic003G089100 Sobic003G284100--Sobic003G089100 Sobic006G070564 Sobic006G070564 Sobic003G284100--Sobic006G070564 Sobic004G279200 Sobic004G279200 Sobic003G284100--Sobic004G279200 Sobic003G284100--Sobic004G247500 Sobic009G157800 Sobic009G157800 Sobic003G284100--Sobic009G157800 Sobic003G284100--Sobic003G137600 Sobic003G137600--Sobic004G173700 Sobic003G137600--Sobic003G212000 Sobic003G234500 Sobic003G234500 Sobic003G137600--Sobic003G234500 Sobic003G137600--Sobic006G120900 Sobic003G137600--Sobic002G113200 Sobic003G137600--Sobic001G365700 Sobic003G137600--Sobic007G212100 Sobic003G137600--Sobic003G284100 Sobic009G189700 Sobic009G189700 Sobic003G137600--Sobic009G189700 Sobic006G118400--Sobic003G273000 Sobic006G118400--Sobic004G232500 Sobic006G118400--Sobic003G335300 Sobic006G118400--Sobic001G482800 Sobic006G118400--Sobic004G159400 Sobic006G118400--Sobic001G365700 Sobic006G118400--Sobic010G216400 Sobic010G031000 Sobic010G031000 Sobic006G118400--Sobic010G031000 Sobic010G262300 Sobic010G262300 Sobic006G118400--Sobic010G262300 Sobic004G247700--Sobic001G482800 Sobic004G247700--Sobic008G188400 Sobic004G247700--Sobic003G212000 Sobic004G247700--Sobic002G113200 Sobic004G247700--Sobic003G137600 Sobic004G247700--Sobic001G365700 Sobic007G138100 Sobic007G138100 Sobic004G247700--Sobic007G138100 Sobic004G247700--Sobic003G284100 Sobic004G247700--Sobic004G247500 Sobic001G031800 Sobic001G031800 Sobic002G246800--Sobic001G031800 Sobic002G246800--Sobic003G335300 Sobic001G181500 Sobic001G181500 Sobic002G246800--Sobic001G181500 Sobic009G209001 Sobic009G209001 Sobic002G246800--Sobic009G209001 Sobic010G231700 Sobic010G231700 Sobic002G246800--Sobic010G231700 Sobic007G141100 Sobic007G141100 Sobic002G246800--Sobic007G141100 Sobic002G246800--Sobic010G031000 Sobic009G215300 Sobic009G215300 Sobic002G246800--Sobic009G215300 Sobic006G124300 Sobic006G124300 Sobic002G246800--Sobic006G124300
Octagon: transcription factors


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