Gene annotation
| Transcriptome id | Sobic.008G188400.1 |
|---|---|
| Synonym | Sb08g022910, HOS3-1 |
| Functional annotation | GNS1/SUR4 membrane family protein, putative, expressed |
| UniProt | A0A1B6PES7 |
| Pfam | PF01151 |
| Panther DB | PTHR11157 PTHR11157:SF11 |
| NCBI CDD | KOG3071; Fatty acyl-CoA elongase/Polyunsaturated fatty acid specific elongation enzyme |
| KEGG Orthology | - |
| Gene Ontology | GO:0016021; integral component of membrane |
Orthologs (automatic annotation)
| TAIR | AT4G36830 : GNS1/SUR4 membrane protein family |
|---|---|
| RAP-DB (Rice) | LOC_Os12g43890.1 : GNS1/SUR4 membrane family protein, putative, expressed |
| MaizeGDB (Corn) | Zm00025a025076 |
| Brachypodium | PNT61479 , KQJ85642 |
| Barley | HORVU7Hr1G108190.1 , HORVU5Hr1G001420.3 , HORVU5Hr1G001420.2 , HORVU7Hr1G108320.1 , HORVU5Hr1G001420.1 |
| Wheat | - |
| Populus | - |
JBrowse
| Sobic.008G188400 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.004G247700 | expressed protein | - |
| 2 | Sobic.001G482800 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@ZIM domain containing protein, putative, expressed | K13464: jasmonate ZIM domain-containing protein |
| 3 | Sobic.004G232500 | dnaJ homolog subfamily C member 7, putative, expressed | K09527: DnaJ homolog subfamily C member 7 |
| 4 | Sobic.001G365700 | OsRhmbd13 - Putative Rhomboid homologue, expressed | - |
| 5 | Sobic.003G335300 | E2F-related protein, putative, expressed | - |
| 6 | Sobic.007G219500 | tentative name(PubMedID : 31536532)@core histone H2A/H2B/H3/H4, putative, expressed | - |
| 7 | Sobic.004G173700 | SLL1 protein, putative, expressed | - |
| 8 | Sobic.003G284100 | expressed protein | - |
| 9 | Sobic.008G040400 | DUF584 domain containing protein, putative, expressed | - |
| 10 | Sobic.009G176400 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed | - |
| 11 | Sobic.002G228900 | RNA recognition motif containing protein, putative, expressed | - |
| 12 | Sobic.003G137600 | CHIT10 - Chitinase family protein precursor, expressed | - |
| 13 | Sobic.003G212000 | OsCML12 - Calmodulin-related calcium sensor protein, expressed | K13448: calcium-binding protein CML |
| 14 | Sobic.004G247500 | "HD-zip transcription factor, ortholog of sihdz02 of foxtail millet (Setaria italica L.)"(PubMedID : 29862293)@caleosin related protein, putative, expressed | K17991: peroxygenase |
| 15 | Sobic.007G212100 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@AGC_PVPK_like_CDK8.2 - ACG kinases include homologs to PKA, PKG and PKC, expressed | - |
| 16 | Sobic.010G216400 | expressed protein | - |
| 17 | Sobic.007G138100 | zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed | - |
| 18 | Sobic.010G043250 | - | - |
| 19 | Sobic.006G118400 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@gibberellin 20 oxidase 2, putative, expressed | - |
| 20 | Sobic.003G273000 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@hydrolase, putative, expressed | K14664: IAA-amino acid hydrolase |
Gene co-expression network
Octagon: transcription factors
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