Gene annotation
Transcriptome id Sobic.010G216400.1
Synonym Sb10g026270
Functional annotation expressed protein
UniProt C5Z797
Pfam PF05915
Panther DB PTHR15664
NCBI CDD KOG4753; Predicted membrane protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G29850 : Eukaryotic protein of unknown function (DUF872)
RAP-DB (Rice) LOC_Os02g07980.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium KQK16934
Barley HORVU6Hr1G030800.2 , HORVU6Hr1G030800.1 , HORVU6Hr1G030790.4 , HORVU6Hr1G030790.6 , HORVU6Hr1G030790.5 , HORVU6Hr1G030790.3 , HORVU6Hr1G030790.2 , HORVU6Hr1G030790.1 , HORVU7Hr1G110610.4 , HORVU7Hr1G110610.2 , HORVU7Hr1G110610.3 , HORVU7Hr1G110610.1
Wheat TraesCS6B02G181100 , TraesCS7D02G479200 , TraesCS7B02G398900 , TraesCS6D02G142700 , TraesCS6A02G153400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G365700 OsRhmbd13 - Putative Rhomboid homologue, expressed -
2 Sobic.009G069600 NADP-ME(PubMedID : 19549309)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NADP-malic enzyme(PubMedID : 26904072)@NADP-dependent malic enzyme(PubMedID : 27016024)@NADP-dependent malic enzyme, chloroplast precursor, putative, expressed K00029: E1.1.1.40, malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+)
3 Sobic.004G232500 dnaJ homolog subfamily C member 7, putative, expressed K09527: DnaJ homolog subfamily C member 7
4 Sobic.010G031000 expressed protein -
5 Sobic.003G273000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@hydrolase, putative, expressed K14664: IAA-amino acid hydrolase
6 Sobic.009G176400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
7 Sobic.003G335300 E2F-related protein, putative, expressed -
8 Sobic.004G173700 SLL1 protein, putative, expressed -
9 Sobic.001G482800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@ZIM domain containing protein, putative, expressed K13464: jasmonate ZIM domain-containing protein
10 Sobic.006G118400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@gibberellin 20 oxidase 2, putative, expressed -
11 Sobic.009G176500 similar to Putative uncharacterized protein(PubMedID : 29862293)@harpin-induced protein 1 domain containing protein, expressed -
12 Sobic.001G282900 cytidylyltransferase domain containing protein, expressed K00968: choline-phosphate cytidylyltransferase
13 Sobic.007G212100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@AGC_PVPK_like_CDK8.2 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
14 Sobic.008G006300 prenylated rab acceptor, putative, expressed -
15 Sobic.003G016300 SFT2, putative, expressed -
16 Sobic.004G315000 expressed protein -
17 Sobic.008G188400 GNS1/SUR4 membrane family protein, putative, expressed -
18 Sobic.004G159400 hydrolase, NUDIX family, domain containing protein, expressed K07766: diphosphoinositol-polyphosphate diphosphatase
19 Sobic.002G352200 succinyl-CoA ligase subunit alpha-2, mitochondrial precursor, putative, expressed K01899: succinyl-CoA synthetase alpha subunit
20 Sobic.004G260200 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed -


Gene co-expression network
sample Sobic010G216400 Sobic010G216400 Sobic001G365700 Sobic001G365700 Sobic010G216400--Sobic001G365700 Sobic009G069600 Sobic009G069600 Sobic010G216400--Sobic009G069600 Sobic004G232500 Sobic004G232500 Sobic010G216400--Sobic004G232500 Sobic010G031000 Sobic010G031000 Sobic010G216400--Sobic010G031000 Sobic003G273000 Sobic003G273000 Sobic010G216400--Sobic003G273000 Sobic009G176400 Sobic009G176400 Sobic010G216400--Sobic009G176400 Sobic003G335300 Sobic003G335300 Sobic010G216400--Sobic003G335300 Sobic004G173700 Sobic004G173700 Sobic010G216400--Sobic004G173700 Sobic001G482800 Sobic001G482800 Sobic010G216400--Sobic001G482800 Sobic001G365700--Sobic003G335300 Sobic001G365700--Sobic004G173700 Sobic004G127000 Sobic004G127000 Sobic001G365700--Sobic004G127000 Sobic003G137600 Sobic003G137600 Sobic001G365700--Sobic003G137600 Sobic001G365700--Sobic001G482800 Sobic001G365700--Sobic010G216400 Sobic003G284100 Sobic003G284100 Sobic001G365700--Sobic003G284100 Sobic001G365700--Sobic004G232500 Sobic010G043250 Sobic010G043250 Sobic001G365700--Sobic010G043250 Sobic009G069600--Sobic010G031000 Sobic009G069600--Sobic010G216400 Sobic009G069600--Sobic003G273000 Sobic001G508466 Sobic001G508466 Sobic009G069600--Sobic001G508466 Sobic009G069600--Sobic004G232500 Sobic004G159400 Sobic004G159400 Sobic009G069600--Sobic004G159400 Sobic001G197000 Sobic001G197000 Sobic009G069600--Sobic001G197000 Sobic009G069600--Sobic001G365700 Sobic009G069600--Sobic003G335300 Sobic004G232500--Sobic003G335300 Sobic004G232500--Sobic003G273000 Sobic004G232500--Sobic001G482800 Sobic007G212100 Sobic007G212100 Sobic004G232500--Sobic007G212100 Sobic008G188400 Sobic008G188400 Sobic004G232500--Sobic008G188400 Sobic004G232500--Sobic010G216400 Sobic004G232500--Sobic001G365700 Sobic006G118400 Sobic006G118400 Sobic004G232500--Sobic006G118400 Sobic004G232500--Sobic004G159400 Sobic010G031000--Sobic009G069600 Sobic010G031000--Sobic003G273000 Sobic004G260200 Sobic004G260200 Sobic010G031000--Sobic004G260200 Sobic010G031000--Sobic001G197000 Sobic001G404800 Sobic001G404800 Sobic010G031000--Sobic001G404800 Sobic001G047800 Sobic001G047800 Sobic010G031000--Sobic001G047800 Sobic010G031000--Sobic001G508466 Sobic003G215700 Sobic003G215700 Sobic010G031000--Sobic003G215700 Sobic010G031000--Sobic010G216400 Sobic001G513300 Sobic001G513300 Sobic003G273000--Sobic001G513300 Sobic003G273000--Sobic004G232500 Sobic003G273000--Sobic009G069600 Sobic003G273000--Sobic010G031000 Sobic003G273000--Sobic004G159400 Sobic003G273000--Sobic006G118400 Sobic003G273000--Sobic001G508466 Sobic001G295100 Sobic001G295100 Sobic003G273000--Sobic001G295100 Sobic003G273000--Sobic010G216400 Sobic009G176400--Sobic007G212100 Sobic009G176400--Sobic004G173700 Sobic004G247500 Sobic004G247500 Sobic009G176400--Sobic004G247500 Sobic009G176400--Sobic003G137600 Sobic009G157800 Sobic009G157800 Sobic009G176400--Sobic009G157800 Sobic009G176400--Sobic004G232500 Sobic009G176400--Sobic001G365700 Sobic009G176400--Sobic010G216400 Sobic004G232700 Sobic004G232700 Sobic009G176400--Sobic004G232700 Sobic003G335300--Sobic001G365700 Sobic003G335300--Sobic001G482800 Sobic003G335300--Sobic004G173700 Sobic003G335300--Sobic004G232500 Sobic003G335300--Sobic003G284100 Sobic003G335300--Sobic003G137600 Sobic003G335300--Sobic006G118400 Sobic004G247700 Sobic004G247700 Sobic003G335300--Sobic004G247700 Sobic002G246800 Sobic002G246800 Sobic003G335300--Sobic002G246800 Sobic004G173700--Sobic003G137600 Sobic006G120900 Sobic006G120900 Sobic004G173700--Sobic006G120900 Sobic002G420600 Sobic002G420600 Sobic004G173700--Sobic002G420600 Sobic001G387200 Sobic001G387200 Sobic004G173700--Sobic001G387200 Sobic004G173700--Sobic001G365700 Sobic003G129900 Sobic003G129900 Sobic004G173700--Sobic003G129900 Sobic004G173700--Sobic007G212100 Sobic001G303900 Sobic001G303900 Sobic004G173700--Sobic001G303900 Sobic008G018300 Sobic008G018300 Sobic004G173700--Sobic008G018300 Sobic001G482800--Sobic004G247700 Sobic001G482800--Sobic003G335300 Sobic001G482800--Sobic001G365700 Sobic001G482800--Sobic004G232500 Sobic001G482800--Sobic008G188400 Sobic001G482800--Sobic003G137600 Sobic001G482800--Sobic006G118400 Sobic001G482800--Sobic004G247500 Sobic001G482800--Sobic003G284100
Octagon: transcription factors


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