Gene annotation
| Transcriptome id | Sobic.004G159400.3,Sobic.004G159400.1 |
|---|---|
| Synonym | NUDT12, Sb04g021190, atnudt12 |
| Functional annotation | hydrolase, NUDIX family, domain containing protein, expressed |
| UniProt | C5XT95 |
| Pfam | PF00293 |
| Panther DB | PTHR12629 PTHR12629:SF1 |
| NCBI CDD | KOG2839; Diadenosine and diphosphoinositol polyphosphate phosphohydrolase |
| KEGG Orthology | K07766; diphosphoinositol-polyphosphate diphosphatase |
| Gene Ontology | GO:0016787; hydrolase activity |
Orthologs (automatic annotation)
| TAIR | AT1G12880 : nudix hydrolase homolog 12 |
|---|---|
| RAP-DB (Rice) | LOC_Os02g32060.3,LOC_Os02g32060.1 : hydrolase, NUDIX family, domain containing protein, expressed |
| MaizeGDB (Corn) | Zm00025a020467 , Zm00025a031328 |
| Brachypodium | KQJ99642 , KQJ99641 , KQJ82335 |
| Barley | - |
| Wheat | - |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.001G197000 | dehydration response related protein, putative, expressed | - |
| 2 | Sobic.001G508466 | - | - |
| 3 | Sobic.008G006300 | prenylated rab acceptor, putative, expressed | - |
| 4 | Sobic.001G047800 | cytochrome b-c1 complex subunit 7, putative, expressed | K00417: QCR7, ubiquinol-cytochrome c reductase subunit 7 |
| 5 | Sobic.003G273000 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@hydrolase, putative, expressed | K14664: IAA-amino acid hydrolase |
| 6 | Sobic.002G418400 | ubiquinol-cytochrome c reductase complex 6.7 kDa protein, putative, expressed | - |
| 7 | Sobic.002G329900 | core histone H2A/H2B/H3/H4, putative, expressed | K11251: histone H2A |
| 8 | Sobic.004G259432 | - | - |
| 9 | Sobic.004G232500 | dnaJ homolog subfamily C member 7, putative, expressed | K09527: DnaJ homolog subfamily C member 7 |
| 10 | Sobic.002G355100 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@STE_PAK_Ste20_Slob_Wnk.5 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed | K08867: WNK, WNK lysine deficient protein kinase |
| 11 | Sobic.001G077000 | similar to Cold acclimation protein COR413-PM1(PubMedID : 29862293)@cold acclimation protein WCOR413, putative, expressed | - |
| 12 | Sobic.010G031000 | expressed protein | - |
| 13 | Sobic.009G069600 | NADP-ME(PubMedID : 19549309)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NADP-malic enzyme(PubMedID : 26904072)@NADP-dependent malic enzyme(PubMedID : 27016024)@NADP-dependent malic enzyme, chloroplast precursor, putative, expressed | K00029: E1.1.1.40, malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) |
| 14 | Sobic.010G077650 | - | - |
| 15 | Sobic.006G118400 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@gibberellin 20 oxidase 2, putative, expressed | - |
| 16 | Sobic.002G136700 | expressed protein | - |
| 17 | Sobic.003G218400 | cytochrome c oxidase subunit 5B, mitochondrial precursor, putative, expressed | K02265: cytochrome c oxidase subunit 5b |
| 18 | Sobic.003G215700 | ATP synthase epsilon chain, mitochondrial, putative, expressed | K02135: ATPeF1E, ATP5E, F-type H+-transporting ATPase subunit epsilon |
| 19 | Sobic.002G355700 | histone H3, putative, expressed | K11253: histone H3 |
| 20 | Sobic.004G228700 | expressed protein | - |
Gene co-expression network
Octagon: transcription factors
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