Gene annotation
Transcriptome id Sobic.001G508466.2,Sobic.001G508466.1
Synonym -
Functional annotation -
UniProt A0A1Z5SBJ1 , A0A1Z5SBR3
Pfam PF17123 PF14624 PF13768
Panther DB PTHR10579 PTHR10579:SF54
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G60710 : Zinc finger (C3HC4-type RING finger) family protein
RAP-DB (Rice) LOC_Os03g04890.1 : zinc finger family protein, putative, expressed
MaizeGDB (Corn) Zm00025a017682 , Zm00025a006668 , Zm00025a000571
Brachypodium PNT78229
Barley HORVU4Hr1G084340.1 , HORVU4Hr1G084340.3 , HORVU4Hr1G084340.2
Wheat TraesCS4B02G344100 , TraesCS4D02G339200 , TraesCS4D02G339200 , TraesCS5A02G512800 , TraesCS5A02G512800
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G146000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@fructose-bisphospate aldolase isozyme, putative, expressed K01623: fructose-bisphosphate aldolase, class I
2 Sobic.004G159400 hydrolase, NUDIX family, domain containing protein, expressed K07766: diphosphoinositol-polyphosphate diphosphatase
3 Sobic.004G205100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glyceraldehyde-3-phosphate dehydrogenase, putative, expressed K00134: GAPDH, glyceraldehyde 3-phosphate dehydrogenase
4 Sobic.002G418400 ubiquinol-cytochrome c reductase complex 6.7 kDa protein, putative, expressed -
5 Sobic.005G099000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glycosyl hydrolase, putative, expressed -
6 Sobic.001G108200 expressed protein -
7 Sobic.002G355100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@STE_PAK_Ste20_Slob_Wnk.5 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K08867: WNK, WNK lysine deficient protein kinase
8 Sobic.009G234100 WRKY49, expressed -
9 Sobic.004G208700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CHIT1 - Chitinase family protein precursor, expressed K01183: chitinase
10 Sobic.003G345100 flavonol synthase/flavanone 3-hydroxylase, putative, expressed -
11 Sobic.002G336600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@nucleoside transporter, putative, expressed K15014: SLC29A1_2_3, solute carrier family 29 (equilibrative nucleoside transporter), member 1/2/3
12 Sobic.003G352300 triosephosphate isomerase(PubMedID : 27016024)@triosephosphate isomerase, cytosolic, putative, expressed K01803: TPI, triosephosphate isomerase (TIM)
13 Sobic.004G100700 ethylene-responsive transcription factor TINY, putative, expressed K09286: EREBP-like factor
14 Sobic.009G063900 expressed protein -
15 Sobic.004G061200 expressed protein -
16 Sobic.004G141200 cytochrome P450, putative, expressed K00487: trans-cinnamate 4-monooxygenase
17 Sobic.003G041200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
18 Sobic.001G435000 gibberellin receptor GID1L2, putative, expressed -
19 Sobic.008G050600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor ERF110, putative, expressed -
20 Sobic.001G477600 zinc finger protein, putative, expressed -


Gene co-expression network
sample Sobic001G508466 Sobic001G508466 Sobic004G146000 Sobic004G146000 Sobic001G508466--Sobic004G146000 Sobic004G159400 Sobic004G159400 Sobic001G508466--Sobic004G159400 Sobic004G205100 Sobic004G205100 Sobic001G508466--Sobic004G205100 Sobic002G418400 Sobic002G418400 Sobic001G508466--Sobic002G418400 Sobic005G099000 Sobic005G099000 Sobic001G508466--Sobic005G099000 Sobic001G108200 Sobic001G108200 Sobic001G508466--Sobic001G108200 Sobic002G355100 Sobic002G355100 Sobic001G508466--Sobic002G355100 Sobic009G234100 Sobic009G234100 Sobic001G508466--Sobic009G234100 Sobic004G208700 Sobic004G208700 Sobic001G508466--Sobic004G208700 Sobic003G393900 Sobic003G393900 Sobic004G146000--Sobic003G393900 Sobic006G267200 Sobic006G267200 Sobic004G146000--Sobic006G267200 Sobic001G459800 Sobic001G459800 Sobic004G146000--Sobic001G459800 Sobic004G146000--Sobic001G108200 Sobic001G405500 Sobic001G405500 Sobic004G146000--Sobic001G405500 Sobic004G141200 Sobic004G141200 Sobic004G146000--Sobic004G141200 Sobic004G065500 Sobic004G065500 Sobic004G146000--Sobic004G065500 Sobic003G355100 Sobic003G355100 Sobic004G146000--Sobic003G355100 Sobic003G148600 Sobic003G148600 Sobic004G146000--Sobic003G148600 Sobic001G197000 Sobic001G197000 Sobic004G159400--Sobic001G197000 Sobic004G159400--Sobic001G508466 Sobic008G006300 Sobic008G006300 Sobic004G159400--Sobic008G006300 Sobic001G047800 Sobic001G047800 Sobic004G159400--Sobic001G047800 Sobic003G273000 Sobic003G273000 Sobic004G159400--Sobic003G273000 Sobic004G159400--Sobic002G418400 Sobic002G329900 Sobic002G329900 Sobic004G159400--Sobic002G329900 Sobic004G259432 Sobic004G259432 Sobic004G159400--Sobic004G259432 Sobic004G232500 Sobic004G232500 Sobic004G159400--Sobic004G232500 Sobic003G352300 Sobic003G352300 Sobic004G205100--Sobic003G352300 Sobic006G092500 Sobic006G092500 Sobic004G205100--Sobic006G092500 Sobic009G183400 Sobic009G183400 Sobic004G205100--Sobic009G183400 Sobic009G159400 Sobic009G159400 Sobic004G205100--Sobic009G159400 Sobic001G476500 Sobic001G476500 Sobic004G205100--Sobic001G476500 Sobic007G184600 Sobic007G184600 Sobic004G205100--Sobic007G184600 Sobic005G091500 Sobic005G091500 Sobic004G205100--Sobic005G091500 Sobic006G099900 Sobic006G099900 Sobic004G205100--Sobic006G099900 Sobic003G417800 Sobic003G417800 Sobic004G205100--Sobic003G417800 Sobic006G083500 Sobic006G083500 Sobic002G418400--Sobic006G083500 Sobic003G215700 Sobic003G215700 Sobic002G418400--Sobic003G215700 Sobic003G209000 Sobic003G209000 Sobic002G418400--Sobic003G209000 Sobic002G398901 Sobic002G398901 Sobic002G418400--Sobic002G398901 Sobic004G211833 Sobic004G211833 Sobic002G418400--Sobic004G211833 Sobic010G012500 Sobic010G012500 Sobic002G418400--Sobic010G012500 Sobic002G418400--Sobic001G047800 Sobic004G259200 Sobic004G259200 Sobic002G418400--Sobic004G259200 Sobic001G404800 Sobic001G404800 Sobic002G418400--Sobic001G404800 Sobic005G063100 Sobic005G063100 Sobic005G099000--Sobic005G063100 Sobic003G345100 Sobic003G345100 Sobic005G099000--Sobic003G345100 Sobic003G116800 Sobic003G116800 Sobic005G099000--Sobic003G116800 Sobic005G099000--Sobic004G141200 Sobic001G169500 Sobic001G169500 Sobic005G099000--Sobic001G169500 Sobic001G435000 Sobic001G435000 Sobic005G099000--Sobic001G435000 Sobic005G099000--Sobic004G208700 Sobic005G011300 Sobic005G011300 Sobic005G099000--Sobic005G011300 Sobic005G099000--Sobic001G108200 Sobic001G108200--Sobic004G141200 Sobic001G108200--Sobic003G393900 Sobic004G100700 Sobic004G100700 Sobic001G108200--Sobic004G100700 Sobic003G369100 Sobic003G369100 Sobic001G108200--Sobic003G369100 Sobic003G086600 Sobic003G086600 Sobic001G108200--Sobic003G086600 Sobic001G108200--Sobic003G355100 Sobic007G214600 Sobic007G214600 Sobic001G108200--Sobic007G214600 Sobic003G382800 Sobic003G382800 Sobic001G108200--Sobic003G382800 Sobic001G108200--Sobic005G099000 Sobic009G168900 Sobic009G168900 Sobic002G355100--Sobic009G168900 Sobic001G304700 Sobic001G304700 Sobic002G355100--Sobic001G304700 Sobic002G355100--Sobic001G508466 Sobic002G336600 Sobic002G336600 Sobic002G355100--Sobic002G336600 Sobic002G055600 Sobic002G055600 Sobic002G355100--Sobic002G055600 Sobic005G196800 Sobic005G196800 Sobic002G355100--Sobic005G196800 Sobic004G237800 Sobic004G237800 Sobic002G355100--Sobic004G237800 Sobic010G086200 Sobic010G086200 Sobic002G355100--Sobic010G086200 Sobic004G061200 Sobic004G061200 Sobic002G355100--Sobic004G061200 Sobic009G234100--Sobic004G208700 Sobic009G234100--Sobic005G063100 Sobic009G234100--Sobic003G345100 Sobic003G286600 Sobic003G286600 Sobic009G234100--Sobic003G286600 Sobic009G234100--Sobic001G435000 Sobic008G050600 Sobic008G050600 Sobic009G234100--Sobic008G050600 Sobic009G234100--Sobic005G099000 Sobic007G155000 Sobic007G155000 Sobic009G234100--Sobic007G155000 Sobic010G259600 Sobic010G259600 Sobic009G234100--Sobic010G259600 Sobic004G208700--Sobic009G234100 Sobic004G208700--Sobic001G435000 Sobic004G208700--Sobic003G345100 Sobic004G208700--Sobic003G286600 Sobic004G208700--Sobic008G050600 Sobic009G164600 Sobic009G164600 Sobic004G208700--Sobic009G164600 Sobic004G208700--Sobic009G159400 Sobic004G208700--Sobic005G063100 Sobic004G208700--Sobic007G155000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.