Gene annotation
Transcriptome id Sobic.009G063900.1
Synonym Sb09g005320
Functional annotation expressed protein
UniProt A0A1B6P6W9
Pfam -
Panther DB PTHR37713 PTHR37713:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G68680 : -
RAP-DB (Rice) LOC_Os05g08414.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium -
Barley HORVU1Hr1G026140.3 , HORVU1Hr1G026140.1 , HORVU1Hr1G026140.4
Wheat TraesCS1A02G116600 , TraesCS1B02G136600
Populus -


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cDNA sequences
Sobic.009G063900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G275200 CHCH domain containing protein, expressed -
2 Sobic.001G097600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@"salidroside biosynthesis, ethanol degradation II, phytol degradation"(PubMedID : 21853065)@dehydrogenase, putative, expressed K18857: alcohol dehydrogenase class-P
3 Sobic.002G393000 pyrrolidone-carboxylate peptidase, putative, expressed K01304: pyroglutamyl-peptidase
4 Sobic.003G086600 "domain confirmed by Pfam database, expressed in root, expression induced by IAA and BR treatments"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed -
5 Sobic.004G280200 tobamovirus multiplication protein, putative, expressed -
6 Sobic.004G205100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glyceraldehyde-3-phosphate dehydrogenase, putative, expressed K00134: GAPDH, glyceraldehyde 3-phosphate dehydrogenase
7 Sobic.009G183400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glycosyl hydrolases family 17, putative, expressed -
8 Sobic.001G405500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@pyruvate decarboxylase isozyme 2, putative, expressed K01568: PDC, pyruvate decarboxylase
9 Sobic.001G309600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@zinc finger, C3HC4 type, domain containing protein, expressed -
10 Sobic.002G414600 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@hypoxia-responsive family protein, putative, expressed -
11 Sobic.003G367200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@zinc finger, C3HC4 type domain containing protein, expressed K19040: E3 ubiquitin-protein ligase ATL10/75/76/77/78
12 Sobic.004G146000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@fructose-bisphospate aldolase isozyme, putative, expressed K01623: fructose-bisphosphate aldolase, class I
13 Sobic.005G103500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@dehydrogenase, putative, expressed -
14 Sobic.003G387000 expressed protein -
15 Sobic.001G397200 universal stress protein domain containing protein, putative, expressed -
16 Sobic.005G016700 DUF567 domain containing protein, putative, expressed -
17 Sobic.001G108200 expressed protein -
18 Sobic.001G481600 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
19 Sobic.003G072300 triosephosphate isomerase(PubMedID : 27016024)@triosephosphate isomerase, cytosolic, putative, expressed K01803: TPI, triosephosphate isomerase (TIM)
20 Sobic.001G149800 2-aminoethanethiol dioxygenase, putative, expressed K10712: cysteamine dioxygenase


Gene co-expression network
sample Sobic009G063900 Sobic009G063900 Sobic006G275200 Sobic006G275200 Sobic009G063900--Sobic006G275200 Sobic001G097600 Sobic001G097600 Sobic009G063900--Sobic001G097600 Sobic002G393000 Sobic002G393000 Sobic009G063900--Sobic002G393000 Sobic003G086600 Sobic003G086600 Sobic009G063900--Sobic003G086600 Sobic004G280200 Sobic004G280200 Sobic009G063900--Sobic004G280200 Sobic004G205100 Sobic004G205100 Sobic009G063900--Sobic004G205100 Sobic009G183400 Sobic009G183400 Sobic009G063900--Sobic009G183400 Sobic001G405500 Sobic001G405500 Sobic009G063900--Sobic001G405500 Sobic001G309600 Sobic001G309600 Sobic009G063900--Sobic001G309600 Sobic008G136400 Sobic008G136400 Sobic006G275200--Sobic008G136400 Sobic006G275200--Sobic002G393000 Sobic009G008900 Sobic009G008900 Sobic006G275200--Sobic009G008900 Sobic006G173900 Sobic006G173900 Sobic006G275200--Sobic006G173900 Sobic006G275200--Sobic001G097600 Sobic001G119400 Sobic001G119400 Sobic006G275200--Sobic001G119400 Sobic003G367200 Sobic003G367200 Sobic006G275200--Sobic003G367200 Sobic001G317000 Sobic001G317000 Sobic006G275200--Sobic001G317000 Sobic001G038900 Sobic001G038900 Sobic006G275200--Sobic001G038900 Sobic001G097600--Sobic009G183400 Sobic001G097600--Sobic006G275200 Sobic002G414600 Sobic002G414600 Sobic001G097600--Sobic002G414600 Sobic001G097600--Sobic001G317000 Sobic001G097600--Sobic003G367200 Sobic001G097600--Sobic001G038900 Sobic001G097600--Sobic001G119400 Sobic004G216600 Sobic004G216600 Sobic001G097600--Sobic004G216600 Sobic001G097600--Sobic008G136400 Sobic002G393000--Sobic001G119400 Sobic002G393000--Sobic006G275200 Sobic002G393000--Sobic006G173900 Sobic001G423800 Sobic001G423800 Sobic002G393000--Sobic001G423800 Sobic002G393000--Sobic009G008900 Sobic002G393000--Sobic008G136400 Sobic010G099900 Sobic010G099900 Sobic002G393000--Sobic010G099900 Sobic002G393000--Sobic002G414600 Sobic002G393000--Sobic009G183400 Sobic002G068600 Sobic002G068600 Sobic003G086600--Sobic002G068600 Sobic003G394400 Sobic003G394400 Sobic003G086600--Sobic003G394400 Sobic003G086600--Sobic001G405500 Sobic001G108200 Sobic001G108200 Sobic003G086600--Sobic001G108200 Sobic004G166200 Sobic004G166200 Sobic003G086600--Sobic004G166200 Sobic003G382800 Sobic003G382800 Sobic003G086600--Sobic003G382800 Sobic003G355100 Sobic003G355100 Sobic003G086600--Sobic003G355100 Sobic001G397200 Sobic001G397200 Sobic003G086600--Sobic001G397200 Sobic007G026600 Sobic007G026600 Sobic003G086600--Sobic007G026600 Sobic009G169000 Sobic009G169000 Sobic004G280200--Sobic009G169000 Sobic004G280200--Sobic001G405500 Sobic003G369100 Sobic003G369100 Sobic004G280200--Sobic003G369100 Sobic004G280200--Sobic007G026600 Sobic004G280200--Sobic003G086600 Sobic004G280200--Sobic003G367200 Sobic003G144700 Sobic003G144700 Sobic004G280200--Sobic003G144700 Sobic004G280200--Sobic006G275200 Sobic002G261200 Sobic002G261200 Sobic004G280200--Sobic002G261200 Sobic003G352300 Sobic003G352300 Sobic004G205100--Sobic003G352300 Sobic006G092500 Sobic006G092500 Sobic004G205100--Sobic006G092500 Sobic004G205100--Sobic009G183400 Sobic009G159400 Sobic009G159400 Sobic004G205100--Sobic009G159400 Sobic001G476500 Sobic001G476500 Sobic004G205100--Sobic001G476500 Sobic007G184600 Sobic007G184600 Sobic004G205100--Sobic007G184600 Sobic005G091500 Sobic005G091500 Sobic004G205100--Sobic005G091500 Sobic006G099900 Sobic006G099900 Sobic004G205100--Sobic006G099900 Sobic003G417800 Sobic003G417800 Sobic004G205100--Sobic003G417800 Sobic009G183400--Sobic001G476500 Sobic009G183400--Sobic001G119400 Sobic009G183400--Sobic006G092500 Sobic009G183400--Sobic001G038900 Sobic009G183400--Sobic001G097600 Sobic009G061200 Sobic009G061200 Sobic009G183400--Sobic009G061200 Sobic009G183400--Sobic002G414600 Sobic004G100700 Sobic004G100700 Sobic009G183400--Sobic004G100700 Sobic001G140900 Sobic001G140900 Sobic009G183400--Sobic001G140900 Sobic001G405500--Sobic003G086600 Sobic003G148600 Sobic003G148600 Sobic001G405500--Sobic003G148600 Sobic001G405500--Sobic003G394400 Sobic001G405500--Sobic001G108200 Sobic001G405500--Sobic007G026600 Sobic001G405500--Sobic003G144700 Sobic001G405500--Sobic003G355100 Sobic001G405500--Sobic003G382800 Sobic006G267200 Sobic006G267200 Sobic001G405500--Sobic006G267200 Sobic001G309600--Sobic001G397200 Sobic001G481500 Sobic001G481500 Sobic001G309600--Sobic001G481500 Sobic010G032100 Sobic010G032100 Sobic001G309600--Sobic010G032100 Sobic006G032700 Sobic006G032700 Sobic001G309600--Sobic006G032700 Sobic001G149800 Sobic001G149800 Sobic001G309600--Sobic001G149800 Sobic003G138300 Sobic003G138300 Sobic001G309600--Sobic003G138300 Sobic001G309600--Sobic003G086600 Sobic002G215300 Sobic002G215300 Sobic001G309600--Sobic002G215300 Sobic001G481600 Sobic001G481600 Sobic001G309600--Sobic001G481600
Octagon: transcription factors


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