Gene annotation
Transcriptome id Sobic.010G077650.1
Synonym -
Functional annotation -
UniProt A0A1W0VRW4
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) -
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G159400 hydrolase, NUDIX family, domain containing protein, expressed K07766: diphosphoinositol-polyphosphate diphosphatase
2 Sobic.003G273000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@hydrolase, putative, expressed K14664: IAA-amino acid hydrolase
3 Sobic.001G508466 - -
4 Sobic.001G197000 dehydration response related protein, putative, expressed -
5 Sobic.002G355100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@STE_PAK_Ste20_Slob_Wnk.5 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K08867: WNK, WNK lysine deficient protein kinase
6 Sobic.004G228700 expressed protein -
7 Sobic.010G031000 expressed protein -
8 Sobic.001G513300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@protein-methionine-S-oxide reductase, putative, expressed -
9 Sobic.004G030501 - -
10 Sobic.004G259432 - -
11 Sobic.009G069600 NADP-ME(PubMedID : 19549309)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NADP-malic enzyme(PubMedID : 26904072)@NADP-dependent malic enzyme(PubMedID : 27016024)@NADP-dependent malic enzyme, chloroplast precursor, putative, expressed K00029: E1.1.1.40, malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+)
12 Sobic.001G295100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
13 Sobic.001G118300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@GLTP domain containing protein, putative, expressed -
14 Sobic.005G091500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@permease domain containing protein, putative, expressed K06901: putative MFS transporter, AGZA family, xanthine/uracil permease
15 Sobic.003G296800 expressed protein -
16 Sobic.001G077000 similar to Cold acclimation protein COR413-PM1(PubMedID : 29862293)@cold acclimation protein WCOR413, putative, expressed -
17 Sobic.002G136700 expressed protein -
18 Sobic.002G418400 ubiquinol-cytochrome c reductase complex 6.7 kDa protein, putative, expressed -
19 Sobic.006G045500 OsFBO3 - F-box and other domain containing protein, expressed -
20 Sobic.010G262300 coiled-coil domain-containing protein 90A, mitochondrial precursor, putative, expressed -


Gene co-expression network
sample Sobic010G077650 Sobic010G077650 Sobic004G159400 Sobic004G159400 Sobic010G077650--Sobic004G159400 Sobic003G273000 Sobic003G273000 Sobic010G077650--Sobic003G273000 Sobic001G508466 Sobic001G508466 Sobic010G077650--Sobic001G508466 Sobic001G197000 Sobic001G197000 Sobic010G077650--Sobic001G197000 Sobic002G355100 Sobic002G355100 Sobic010G077650--Sobic002G355100 Sobic004G228700 Sobic004G228700 Sobic010G077650--Sobic004G228700 Sobic010G031000 Sobic010G031000 Sobic010G077650--Sobic010G031000 Sobic001G513300 Sobic001G513300 Sobic010G077650--Sobic001G513300 Sobic004G030501 Sobic004G030501 Sobic010G077650--Sobic004G030501 Sobic004G159400--Sobic001G197000 Sobic004G159400--Sobic001G508466 Sobic008G006300 Sobic008G006300 Sobic004G159400--Sobic008G006300 Sobic001G047800 Sobic001G047800 Sobic004G159400--Sobic001G047800 Sobic004G159400--Sobic003G273000 Sobic002G418400 Sobic002G418400 Sobic004G159400--Sobic002G418400 Sobic002G329900 Sobic002G329900 Sobic004G159400--Sobic002G329900 Sobic004G259432 Sobic004G259432 Sobic004G159400--Sobic004G259432 Sobic004G232500 Sobic004G232500 Sobic004G159400--Sobic004G232500 Sobic003G273000--Sobic001G513300 Sobic003G273000--Sobic004G232500 Sobic009G069600 Sobic009G069600 Sobic003G273000--Sobic009G069600 Sobic003G273000--Sobic010G031000 Sobic003G273000--Sobic004G159400 Sobic006G118400 Sobic006G118400 Sobic003G273000--Sobic006G118400 Sobic003G273000--Sobic001G508466 Sobic001G295100 Sobic001G295100 Sobic003G273000--Sobic001G295100 Sobic010G216400 Sobic010G216400 Sobic003G273000--Sobic010G216400 Sobic004G146000 Sobic004G146000 Sobic001G508466--Sobic004G146000 Sobic001G508466--Sobic004G159400 Sobic004G205100 Sobic004G205100 Sobic001G508466--Sobic004G205100 Sobic001G508466--Sobic002G418400 Sobic005G099000 Sobic005G099000 Sobic001G508466--Sobic005G099000 Sobic001G108200 Sobic001G108200 Sobic001G508466--Sobic001G108200 Sobic001G508466--Sobic002G355100 Sobic009G234100 Sobic009G234100 Sobic001G508466--Sobic009G234100 Sobic004G208700 Sobic004G208700 Sobic001G508466--Sobic004G208700 Sobic001G197000--Sobic004G159400 Sobic001G077000 Sobic001G077000 Sobic001G197000--Sobic001G077000 Sobic001G197000--Sobic002G329900 Sobic003G215700 Sobic003G215700 Sobic001G197000--Sobic003G215700 Sobic001G197000--Sobic001G047800 Sobic001G533400 Sobic001G533400 Sobic001G197000--Sobic001G533400 Sobic003G209000 Sobic003G209000 Sobic001G197000--Sobic003G209000 Sobic001G197000--Sobic002G418400 Sobic001G197000--Sobic010G031000 Sobic009G168900 Sobic009G168900 Sobic002G355100--Sobic009G168900 Sobic001G304700 Sobic001G304700 Sobic002G355100--Sobic001G304700 Sobic002G355100--Sobic001G508466 Sobic002G336600 Sobic002G336600 Sobic002G355100--Sobic002G336600 Sobic002G055600 Sobic002G055600 Sobic002G355100--Sobic002G055600 Sobic005G196800 Sobic005G196800 Sobic002G355100--Sobic005G196800 Sobic004G237800 Sobic004G237800 Sobic002G355100--Sobic004G237800 Sobic010G086200 Sobic010G086200 Sobic002G355100--Sobic010G086200 Sobic004G061200 Sobic004G061200 Sobic002G355100--Sobic004G061200 Sobic004G228700--Sobic001G513300 Sobic002G136700 Sobic002G136700 Sobic004G228700--Sobic002G136700 Sobic001G110000 Sobic001G110000 Sobic004G228700--Sobic001G110000 Sobic004G259600 Sobic004G259600 Sobic004G228700--Sobic004G259600 Sobic004G228700--Sobic003G273000 Sobic004G228700--Sobic004G259432 Sobic004G228700--Sobic001G197000 Sobic002G183400 Sobic002G183400 Sobic004G228700--Sobic002G183400 Sobic004G228700--Sobic004G159400 Sobic010G031000--Sobic009G069600 Sobic010G031000--Sobic003G273000 Sobic004G260200 Sobic004G260200 Sobic010G031000--Sobic004G260200 Sobic010G031000--Sobic001G197000 Sobic001G404800 Sobic001G404800 Sobic010G031000--Sobic001G404800 Sobic010G031000--Sobic001G047800 Sobic010G031000--Sobic001G508466 Sobic010G031000--Sobic003G215700 Sobic010G031000--Sobic010G216400 Sobic001G513300--Sobic003G273000 Sobic001G513300--Sobic004G228700 Sobic007G016100 Sobic007G016100 Sobic001G513300--Sobic007G016100 Sobic001G308700 Sobic001G308700 Sobic001G513300--Sobic001G308700 Sobic001G513300--Sobic010G031000 Sobic001G513300--Sobic002G136700 Sobic001G513300--Sobic001G508466 Sobic001G513300--Sobic001G295100 Sobic002G362000 Sobic002G362000 Sobic001G513300--Sobic002G362000 Sobic004G030501--Sobic001G533400 Sobic010G001900 Sobic010G001900 Sobic004G030501--Sobic010G001900 Sobic010G262300 Sobic010G262300 Sobic004G030501--Sobic010G262300 Sobic004G030501--Sobic001G508466 Sobic004G030501--Sobic001G077000 Sobic004G030501--Sobic001G197000 Sobic004G273100 Sobic004G273100 Sobic004G030501--Sobic004G273100 Sobic004G030501--Sobic003G273000 Sobic004G030501--Sobic001G513300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.