Gene annotation
Transcriptome id Sobic.001G295100.1
Synonym Sb01g028820
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
expressed protein
UniProt C5WRH4
Pfam PF03208
Panther DB PTHR38519
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G13720 : PRA1 (Prenylated rab acceptor) family protein
RAP-DB (Rice) LOC_Os10g41420.1 : expressed protein
MaizeGDB (Corn) Zm00025a003388
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G273000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@hydrolase, putative, expressed K14664: IAA-amino acid hydrolase
2 Sobic.001G513300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@protein-methionine-S-oxide reductase, putative, expressed -
3 Sobic.001G508466 - -
4 Sobic.004G232500 dnaJ homolog subfamily C member 7, putative, expressed K09527: DnaJ homolog subfamily C member 7
5 Sobic.004G228700 expressed protein -
6 Sobic.004G159400 hydrolase, NUDIX family, domain containing protein, expressed K07766: diphosphoinositol-polyphosphate diphosphatase
7 Sobic.002G348100 40S ribosomal protein S13, putative, expressed K02953: RP-S13e, small subunit ribosomal protein S13e
8 Sobic.004G146000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@fructose-bisphospate aldolase isozyme, putative, expressed K01623: fructose-bisphosphate aldolase, class I
9 Sobic.001G437000 ACT domain containing protein, expressed -
10 Sobic.008G006300 prenylated rab acceptor, putative, expressed -
11 Sobic.002G329900 core histone H2A/H2B/H3/H4, putative, expressed K11251: histone H2A
12 Sobic.009G069600 NADP-ME(PubMedID : 19549309)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NADP-malic enzyme(PubMedID : 26904072)@NADP-dependent malic enzyme(PubMedID : 27016024)@NADP-dependent malic enzyme, chloroplast precursor, putative, expressed K00029: E1.1.1.40, malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+)
13 Sobic.010G077650 - -
14 Sobic.010G031000 expressed protein -
15 Sobic.001G080100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
16 Sobic.006G118400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@gibberellin 20 oxidase 2, putative, expressed -
17 Sobic.001G197000 dehydration response related protein, putative, expressed -
18 Sobic.004G202000 expressed protein -
19 Sobic.010G059300 cytochrome b-c1 complex subunit 8, putative, expressed -
20 Sobic.010G216400 expressed protein -


Gene co-expression network
sample Sobic001G295100 Sobic001G295100 Sobic003G273000 Sobic003G273000 Sobic001G295100--Sobic003G273000 Sobic001G513300 Sobic001G513300 Sobic001G295100--Sobic001G513300 Sobic001G508466 Sobic001G508466 Sobic001G295100--Sobic001G508466 Sobic004G232500 Sobic004G232500 Sobic001G295100--Sobic004G232500 Sobic004G228700 Sobic004G228700 Sobic001G295100--Sobic004G228700 Sobic004G159400 Sobic004G159400 Sobic001G295100--Sobic004G159400 Sobic002G348100 Sobic002G348100 Sobic001G295100--Sobic002G348100 Sobic004G146000 Sobic004G146000 Sobic001G295100--Sobic004G146000 Sobic001G437000 Sobic001G437000 Sobic001G295100--Sobic001G437000 Sobic003G273000--Sobic001G513300 Sobic003G273000--Sobic004G232500 Sobic009G069600 Sobic009G069600 Sobic003G273000--Sobic009G069600 Sobic010G031000 Sobic010G031000 Sobic003G273000--Sobic010G031000 Sobic003G273000--Sobic004G159400 Sobic006G118400 Sobic006G118400 Sobic003G273000--Sobic006G118400 Sobic003G273000--Sobic001G508466 Sobic003G273000--Sobic001G295100 Sobic010G216400 Sobic010G216400 Sobic003G273000--Sobic010G216400 Sobic001G513300--Sobic003G273000 Sobic001G513300--Sobic004G228700 Sobic007G016100 Sobic007G016100 Sobic001G513300--Sobic007G016100 Sobic001G308700 Sobic001G308700 Sobic001G513300--Sobic001G308700 Sobic001G513300--Sobic010G031000 Sobic002G136700 Sobic002G136700 Sobic001G513300--Sobic002G136700 Sobic001G513300--Sobic001G508466 Sobic001G513300--Sobic001G295100 Sobic002G362000 Sobic002G362000 Sobic001G513300--Sobic002G362000 Sobic001G508466--Sobic004G146000 Sobic001G508466--Sobic004G159400 Sobic004G205100 Sobic004G205100 Sobic001G508466--Sobic004G205100 Sobic002G418400 Sobic002G418400 Sobic001G508466--Sobic002G418400 Sobic005G099000 Sobic005G099000 Sobic001G508466--Sobic005G099000 Sobic001G108200 Sobic001G108200 Sobic001G508466--Sobic001G108200 Sobic002G355100 Sobic002G355100 Sobic001G508466--Sobic002G355100 Sobic009G234100 Sobic009G234100 Sobic001G508466--Sobic009G234100 Sobic004G208700 Sobic004G208700 Sobic001G508466--Sobic004G208700 Sobic003G335300 Sobic003G335300 Sobic004G232500--Sobic003G335300 Sobic004G232500--Sobic003G273000 Sobic001G482800 Sobic001G482800 Sobic004G232500--Sobic001G482800 Sobic007G212100 Sobic007G212100 Sobic004G232500--Sobic007G212100 Sobic008G188400 Sobic008G188400 Sobic004G232500--Sobic008G188400 Sobic004G232500--Sobic010G216400 Sobic001G365700 Sobic001G365700 Sobic004G232500--Sobic001G365700 Sobic004G232500--Sobic006G118400 Sobic004G232500--Sobic004G159400 Sobic004G228700--Sobic001G513300 Sobic004G228700--Sobic002G136700 Sobic001G110000 Sobic001G110000 Sobic004G228700--Sobic001G110000 Sobic004G259600 Sobic004G259600 Sobic004G228700--Sobic004G259600 Sobic004G228700--Sobic003G273000 Sobic004G259432 Sobic004G259432 Sobic004G228700--Sobic004G259432 Sobic001G197000 Sobic001G197000 Sobic004G228700--Sobic001G197000 Sobic002G183400 Sobic002G183400 Sobic004G228700--Sobic002G183400 Sobic004G228700--Sobic004G159400 Sobic004G159400--Sobic001G197000 Sobic004G159400--Sobic001G508466 Sobic008G006300 Sobic008G006300 Sobic004G159400--Sobic008G006300 Sobic001G047800 Sobic001G047800 Sobic004G159400--Sobic001G047800 Sobic004G159400--Sobic003G273000 Sobic004G159400--Sobic002G418400 Sobic002G329900 Sobic002G329900 Sobic004G159400--Sobic002G329900 Sobic004G159400--Sobic004G259432 Sobic004G159400--Sobic004G232500 Sobic002G372400 Sobic002G372400 Sobic002G348100--Sobic002G372400 Sobic001G175300 Sobic001G175300 Sobic002G348100--Sobic001G175300 Sobic003G078200 Sobic003G078200 Sobic002G348100--Sobic003G078200 Sobic001G055600 Sobic001G055600 Sobic002G348100--Sobic001G055600 Sobic009G242300 Sobic009G242300 Sobic002G348100--Sobic009G242300 Sobic006G137800 Sobic006G137800 Sobic002G348100--Sobic006G137800 Sobic009G054800 Sobic009G054800 Sobic002G348100--Sobic009G054800 Sobic004G198400 Sobic004G198400 Sobic002G348100--Sobic004G198400 Sobic004G055100 Sobic004G055100 Sobic002G348100--Sobic004G055100 Sobic003G393900 Sobic003G393900 Sobic004G146000--Sobic003G393900 Sobic006G267200 Sobic006G267200 Sobic004G146000--Sobic006G267200 Sobic001G459800 Sobic001G459800 Sobic004G146000--Sobic001G459800 Sobic004G146000--Sobic001G108200 Sobic001G405500 Sobic001G405500 Sobic004G146000--Sobic001G405500 Sobic004G141200 Sobic004G141200 Sobic004G146000--Sobic004G141200 Sobic004G065500 Sobic004G065500 Sobic004G146000--Sobic004G065500 Sobic003G355100 Sobic003G355100 Sobic004G146000--Sobic003G355100 Sobic003G148600 Sobic003G148600 Sobic004G146000--Sobic003G148600 Sobic006G165100 Sobic006G165100 Sobic001G437000--Sobic006G165100 Sobic008G177800 Sobic008G177800 Sobic001G437000--Sobic008G177800 Sobic006G194000 Sobic006G194000 Sobic001G437000--Sobic006G194000 Sobic009G073300 Sobic009G073300 Sobic001G437000--Sobic009G073300 Sobic006G231100 Sobic006G231100 Sobic001G437000--Sobic006G231100 Sobic009G027900 Sobic009G027900 Sobic001G437000--Sobic009G027900 Sobic001G338600 Sobic001G338600 Sobic001G437000--Sobic001G338600 Sobic002G282300 Sobic002G282300 Sobic001G437000--Sobic002G282300 Sobic002G278500 Sobic002G278500 Sobic001G437000--Sobic002G278500
Octagon: transcription factors


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