Gene annotation
Transcriptome id Sobic.003G273000.1
Synonym JR3, Sb03g032500, IAR3
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
hydrolase, putative, expressed
UniProt C5XHN2
Pfam PF01546 PF07687
Panther DB PTHR11014:SF100 PTHR11014
NCBI CDD -
KEGG Orthology K14664; IAA-amino acid hydrolase
Gene Ontology GO:0008152; metabolic process GO:0016787hydrolase activity


Orthologs (automatic annotation)
TAIR AT1G51760 : peptidase M20/M25/M40 family protein
RAP-DB (Rice) LOC_Os01g51060.1 : hydrolase, putative, expressed
MaizeGDB (Corn) Zm00025a038929 , Zm00025a027843
Brachypodium PNT72681 , PNT72680
Barley HORVU3Hr1G066450.2 , HORVU3Hr1G066450.3 , HORVU3Hr1G066450.6 , HORVU3Hr1G066450.4 , HORVU3Hr1G066450.5 , HORVU3Hr1G066450.8 , HORVU3Hr1G066450.9 , HORVU3Hr1G066450.7 , HORVU5Hr1G118040.1 , HORVU5Hr1G118040.3 , HORVU5Hr1G118040.2 , HORVU3Hr1G066450.10 , HORVU3Hr1G066450.11
Wheat TraesCS7D02G426400 , TraesCS5B02G517200 , TraesCS3D02G252900 , TraesCS3B02G283900 , TraesCS3B02G283900
Populus -


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cDNA sequences
Sobic.003G273000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G513300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@protein-methionine-S-oxide reductase, putative, expressed -
2 Sobic.004G232500 dnaJ homolog subfamily C member 7, putative, expressed K09527: DnaJ homolog subfamily C member 7
3 Sobic.009G069600 NADP-ME(PubMedID : 19549309)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NADP-malic enzyme(PubMedID : 26904072)@NADP-dependent malic enzyme(PubMedID : 27016024)@NADP-dependent malic enzyme, chloroplast precursor, putative, expressed K00029: E1.1.1.40, malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+)
4 Sobic.010G031000 expressed protein -
5 Sobic.004G159400 hydrolase, NUDIX family, domain containing protein, expressed K07766: diphosphoinositol-polyphosphate diphosphatase
6 Sobic.006G118400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@gibberellin 20 oxidase 2, putative, expressed -
7 Sobic.001G508466 - -
8 Sobic.001G295100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
9 Sobic.010G216400 expressed protein -
10 Sobic.004G228700 expressed protein -
11 Sobic.001G197000 dehydration response related protein, putative, expressed -
12 Sobic.003G335300 E2F-related protein, putative, expressed -
13 Sobic.001G482800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@ZIM domain containing protein, putative, expressed K13464: jasmonate ZIM domain-containing protein
14 Sobic.009G179400 expressed protein -
15 Sobic.010G077650 - -
16 Sobic.004G146000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@fructose-bisphospate aldolase isozyme, putative, expressed K01623: fructose-bisphosphate aldolase, class I
17 Sobic.008G006300 prenylated rab acceptor, putative, expressed -
18 Sobic.001G308700 ATG1, putative, expressed -
19 Sobic.002G329900 core histone H2A/H2B/H3/H4, putative, expressed K11251: histone H2A
20 Sobic.010G262300 coiled-coil domain-containing protein 90A, mitochondrial precursor, putative, expressed -


Gene co-expression network
sample Sobic003G273000 Sobic003G273000 Sobic001G513300 Sobic001G513300 Sobic003G273000--Sobic001G513300 Sobic004G232500 Sobic004G232500 Sobic003G273000--Sobic004G232500 Sobic009G069600 Sobic009G069600 Sobic003G273000--Sobic009G069600 Sobic010G031000 Sobic010G031000 Sobic003G273000--Sobic010G031000 Sobic004G159400 Sobic004G159400 Sobic003G273000--Sobic004G159400 Sobic006G118400 Sobic006G118400 Sobic003G273000--Sobic006G118400 Sobic001G508466 Sobic001G508466 Sobic003G273000--Sobic001G508466 Sobic001G295100 Sobic001G295100 Sobic003G273000--Sobic001G295100 Sobic010G216400 Sobic010G216400 Sobic003G273000--Sobic010G216400 Sobic001G513300--Sobic003G273000 Sobic004G228700 Sobic004G228700 Sobic001G513300--Sobic004G228700 Sobic007G016100 Sobic007G016100 Sobic001G513300--Sobic007G016100 Sobic001G308700 Sobic001G308700 Sobic001G513300--Sobic001G308700 Sobic001G513300--Sobic010G031000 Sobic002G136700 Sobic002G136700 Sobic001G513300--Sobic002G136700 Sobic001G513300--Sobic001G508466 Sobic001G513300--Sobic001G295100 Sobic002G362000 Sobic002G362000 Sobic001G513300--Sobic002G362000 Sobic003G335300 Sobic003G335300 Sobic004G232500--Sobic003G335300 Sobic004G232500--Sobic003G273000 Sobic001G482800 Sobic001G482800 Sobic004G232500--Sobic001G482800 Sobic007G212100 Sobic007G212100 Sobic004G232500--Sobic007G212100 Sobic008G188400 Sobic008G188400 Sobic004G232500--Sobic008G188400 Sobic004G232500--Sobic010G216400 Sobic001G365700 Sobic001G365700 Sobic004G232500--Sobic001G365700 Sobic004G232500--Sobic006G118400 Sobic004G232500--Sobic004G159400 Sobic009G069600--Sobic010G031000 Sobic009G069600--Sobic010G216400 Sobic009G069600--Sobic003G273000 Sobic009G069600--Sobic001G508466 Sobic009G069600--Sobic004G232500 Sobic009G069600--Sobic004G159400 Sobic001G197000 Sobic001G197000 Sobic009G069600--Sobic001G197000 Sobic009G069600--Sobic001G365700 Sobic009G069600--Sobic003G335300 Sobic010G031000--Sobic009G069600 Sobic010G031000--Sobic003G273000 Sobic004G260200 Sobic004G260200 Sobic010G031000--Sobic004G260200 Sobic010G031000--Sobic001G197000 Sobic001G404800 Sobic001G404800 Sobic010G031000--Sobic001G404800 Sobic001G047800 Sobic001G047800 Sobic010G031000--Sobic001G047800 Sobic010G031000--Sobic001G508466 Sobic003G215700 Sobic003G215700 Sobic010G031000--Sobic003G215700 Sobic010G031000--Sobic010G216400 Sobic004G159400--Sobic001G197000 Sobic004G159400--Sobic001G508466 Sobic008G006300 Sobic008G006300 Sobic004G159400--Sobic008G006300 Sobic004G159400--Sobic001G047800 Sobic004G159400--Sobic003G273000 Sobic002G418400 Sobic002G418400 Sobic004G159400--Sobic002G418400 Sobic002G329900 Sobic002G329900 Sobic004G159400--Sobic002G329900 Sobic004G259432 Sobic004G259432 Sobic004G159400--Sobic004G259432 Sobic004G159400--Sobic004G232500 Sobic006G118400--Sobic003G273000 Sobic006G118400--Sobic004G232500 Sobic006G118400--Sobic003G335300 Sobic006G118400--Sobic001G482800 Sobic006G118400--Sobic004G159400 Sobic006G118400--Sobic001G365700 Sobic006G118400--Sobic010G216400 Sobic006G118400--Sobic010G031000 Sobic010G262300 Sobic010G262300 Sobic006G118400--Sobic010G262300 Sobic004G146000 Sobic004G146000 Sobic001G508466--Sobic004G146000 Sobic001G508466--Sobic004G159400 Sobic004G205100 Sobic004G205100 Sobic001G508466--Sobic004G205100 Sobic001G508466--Sobic002G418400 Sobic005G099000 Sobic005G099000 Sobic001G508466--Sobic005G099000 Sobic001G108200 Sobic001G108200 Sobic001G508466--Sobic001G108200 Sobic002G355100 Sobic002G355100 Sobic001G508466--Sobic002G355100 Sobic009G234100 Sobic009G234100 Sobic001G508466--Sobic009G234100 Sobic004G208700 Sobic004G208700 Sobic001G508466--Sobic004G208700 Sobic001G295100--Sobic003G273000 Sobic001G295100--Sobic001G513300 Sobic001G295100--Sobic001G508466 Sobic001G295100--Sobic004G232500 Sobic001G295100--Sobic004G228700 Sobic001G295100--Sobic004G159400 Sobic002G348100 Sobic002G348100 Sobic001G295100--Sobic002G348100 Sobic001G295100--Sobic004G146000 Sobic001G437000 Sobic001G437000 Sobic001G295100--Sobic001G437000 Sobic010G216400--Sobic001G365700 Sobic010G216400--Sobic009G069600 Sobic010G216400--Sobic004G232500 Sobic010G216400--Sobic010G031000 Sobic010G216400--Sobic003G273000 Sobic009G176400 Sobic009G176400 Sobic010G216400--Sobic009G176400 Sobic010G216400--Sobic003G335300 Sobic004G173700 Sobic004G173700 Sobic010G216400--Sobic004G173700 Sobic010G216400--Sobic001G482800
Octagon: transcription factors


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