Gene annotation
Transcriptome id Sobic.010G262300.1
Synonym Sb10g029850
Functional annotation coiled-coil domain-containing protein 90A, mitochondrial precursor, putative, expressed
UniProt C5Z1S7
Pfam PF07798
Panther DB PTHR14360 PTHR14360:SF1
NCBI CDD KOG3156; Uncharacterized membrane protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G16460 : Protein of unknown function (DUF1640)
RAP-DB (Rice) LOC_Os06g49890.1 : coiled-coil domain-containing protein 90A, mitochondrial precursor, putative, expressed
MaizeGDB (Corn) Zm00025a041733
Brachypodium KQK17524
Barley HORVU7Hr1G091170.2 , HORVU7Hr1G091170.1
Wheat TraesCS7D02G379800 , TraesCS7A02G383300 , TraesCS7A02G383300 , TraesCS7B02G286200
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G239300 thiamine-repressible mitochondrial transport protein THI74, putative, expressed K15289: solute carrier family 35, member F5
2 Sobic.001G308700 ATG1, putative, expressed -
3 Sobic.002G362000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@vesicle transport protein GOT1B, putative, expressed -
4 Sobic.004G030501 - -
5 Sobic.001G148700 signal peptidase complex subunit 1, putative, expressed K12946: signal peptidase complex subunit 1
6 Sobic.004G123000 expressed protein -
7 Sobic.006G118400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@gibberellin 20 oxidase 2, putative, expressed -
8 Sobic.001G067601 - K17553: protein phosphatase 1 regulatory subunit 11
9 Sobic.001G513300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@protein-methionine-S-oxide reductase, putative, expressed -
10 Sobic.004G159000 cytochrome b-c1 complex subunit Rieske, mitochondrial precursor, putative, expressed K00411: UQCRFS1, RIP1, ubiquinol-cytochrome c reductase iron-sulfur subunit
11 Sobic.003G273000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@hydrolase, putative, expressed K14664: IAA-amino acid hydrolase
12 Sobic.010G153100 prefoldin, putative, expressed K14009: BCAP31, B-cell receptor-associated protein 31
13 Sobic.010G031000 expressed protein -
14 Sobic.001G134200 expressed protein -
15 Sobic.002G260200 - -
16 Sobic.001G077000 similar to Cold acclimation protein COR413-PM1(PubMedID : 29862293)@cold acclimation protein WCOR413, putative, expressed -
17 Sobic.001G118300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@GLTP domain containing protein, putative, expressed -
18 Sobic.004G259600 slowmo homolog, putative, expressed -
19 Sobic.003G191500 protein transport protein Sec61 subunit beta, putative, expressed K09481: SEC61B, protein transport protein SEC61 subunit beta
20 Sobic.004G247200 erwinia induced protein 2, putative, expressed -


Gene co-expression network
sample Sobic010G262300 Sobic010G262300 Sobic006G239300 Sobic006G239300 Sobic010G262300--Sobic006G239300 Sobic001G308700 Sobic001G308700 Sobic010G262300--Sobic001G308700 Sobic002G362000 Sobic002G362000 Sobic010G262300--Sobic002G362000 Sobic004G030501 Sobic004G030501 Sobic010G262300--Sobic004G030501 Sobic001G148700 Sobic001G148700 Sobic010G262300--Sobic001G148700 Sobic004G123000 Sobic004G123000 Sobic010G262300--Sobic004G123000 Sobic006G118400 Sobic006G118400 Sobic010G262300--Sobic006G118400 Sobic001G067601 Sobic001G067601 Sobic010G262300--Sobic001G067601 Sobic001G513300 Sobic001G513300 Sobic010G262300--Sobic001G513300 Sobic006G239300--Sobic010G262300 Sobic006G239300--Sobic004G123000 Sobic010G153100 Sobic010G153100 Sobic006G239300--Sobic010G153100 Sobic003G358300 Sobic003G358300 Sobic006G239300--Sobic003G358300 Sobic001G066700 Sobic001G066700 Sobic006G239300--Sobic001G066700 Sobic001G389900 Sobic001G389900 Sobic006G239300--Sobic001G389900 Sobic006G062800 Sobic006G062800 Sobic006G239300--Sobic006G062800 Sobic003G072300 Sobic003G072300 Sobic006G239300--Sobic003G072300 Sobic006G239300--Sobic002G362000 Sobic001G533300 Sobic001G533300 Sobic001G308700--Sobic001G533300 Sobic001G308700--Sobic001G513300 Sobic008G129000 Sobic008G129000 Sobic001G308700--Sobic008G129000 Sobic009G217000 Sobic009G217000 Sobic001G308700--Sobic009G217000 Sobic001G308700--Sobic010G262300 Sobic001G308700--Sobic002G362000 Sobic001G308700--Sobic001G067601 Sobic001G224400 Sobic001G224400 Sobic001G308700--Sobic001G224400 Sobic003G209000 Sobic003G209000 Sobic001G308700--Sobic003G209000 Sobic002G362000--Sobic010G262300 Sobic002G362000--Sobic001G308700 Sobic002G362000--Sobic006G239300 Sobic002G362000--Sobic004G123000 Sobic002G362000--Sobic001G513300 Sobic002G183400 Sobic002G183400 Sobic002G362000--Sobic002G183400 Sobic004G259600 Sobic004G259600 Sobic002G362000--Sobic004G259600 Sobic009G063900 Sobic009G063900 Sobic002G362000--Sobic009G063900 Sobic003G273000 Sobic003G273000 Sobic002G362000--Sobic003G273000 Sobic001G533400 Sobic001G533400 Sobic004G030501--Sobic001G533400 Sobic010G001900 Sobic010G001900 Sobic004G030501--Sobic010G001900 Sobic004G030501--Sobic010G262300 Sobic001G508466 Sobic001G508466 Sobic004G030501--Sobic001G508466 Sobic001G077000 Sobic001G077000 Sobic004G030501--Sobic001G077000 Sobic001G197000 Sobic001G197000 Sobic004G030501--Sobic001G197000 Sobic004G273100 Sobic004G273100 Sobic004G030501--Sobic004G273100 Sobic004G030501--Sobic003G273000 Sobic004G030501--Sobic001G513300 Sobic004G063500 Sobic004G063500 Sobic001G148700--Sobic004G063500 Sobic001G441000 Sobic001G441000 Sobic001G148700--Sobic001G441000 Sobic001G148700--Sobic010G262300 Sobic001G134200 Sobic001G134200 Sobic001G148700--Sobic001G134200 Sobic009G149800 Sobic009G149800 Sobic001G148700--Sobic009G149800 Sobic001G148700--Sobic001G067601 Sobic001G148700--Sobic004G259600 Sobic007G161700 Sobic007G161700 Sobic001G148700--Sobic007G161700 Sobic001G031800 Sobic001G031800 Sobic001G148700--Sobic001G031800 Sobic009G054000 Sobic009G054000 Sobic004G123000--Sobic009G054000 Sobic004G123000--Sobic006G239300 Sobic001G350600 Sobic001G350600 Sobic004G123000--Sobic001G350600 Sobic004G123000--Sobic003G209000 Sobic002G296200 Sobic002G296200 Sobic004G123000--Sobic002G296200 Sobic006G013000 Sobic006G013000 Sobic004G123000--Sobic006G013000 Sobic003G155400 Sobic003G155400 Sobic004G123000--Sobic003G155400 Sobic004G159000 Sobic004G159000 Sobic004G123000--Sobic004G159000 Sobic001G404800 Sobic001G404800 Sobic004G123000--Sobic001G404800 Sobic006G118400--Sobic003G273000 Sobic004G232500 Sobic004G232500 Sobic006G118400--Sobic004G232500 Sobic003G335300 Sobic003G335300 Sobic006G118400--Sobic003G335300 Sobic001G482800 Sobic001G482800 Sobic006G118400--Sobic001G482800 Sobic004G159400 Sobic004G159400 Sobic006G118400--Sobic004G159400 Sobic001G365700 Sobic001G365700 Sobic006G118400--Sobic001G365700 Sobic010G216400 Sobic010G216400 Sobic006G118400--Sobic010G216400 Sobic010G031000 Sobic010G031000 Sobic006G118400--Sobic010G031000 Sobic006G118400--Sobic010G262300 Sobic001G019900 Sobic001G019900 Sobic001G067601--Sobic001G019900 Sobic009G023200 Sobic009G023200 Sobic001G067601--Sobic009G023200 Sobic002G046100 Sobic002G046100 Sobic001G067601--Sobic002G046100 Sobic010G217900 Sobic010G217900 Sobic001G067601--Sobic010G217900 Sobic003G063200 Sobic003G063200 Sobic001G067601--Sobic003G063200 Sobic001G037000 Sobic001G037000 Sobic001G067601--Sobic001G037000 Sobic005G228000 Sobic005G228000 Sobic001G067601--Sobic005G228000 Sobic003G181500 Sobic003G181500 Sobic001G067601--Sobic003G181500 Sobic003G162700 Sobic003G162700 Sobic001G067601--Sobic003G162700 Sobic001G513300--Sobic003G273000 Sobic004G228700 Sobic004G228700 Sobic001G513300--Sobic004G228700 Sobic007G016100 Sobic007G016100 Sobic001G513300--Sobic007G016100 Sobic001G513300--Sobic001G308700 Sobic001G513300--Sobic010G031000 Sobic002G136700 Sobic002G136700 Sobic001G513300--Sobic002G136700 Sobic001G513300--Sobic001G508466 Sobic001G295100 Sobic001G295100 Sobic001G513300--Sobic001G295100 Sobic001G513300--Sobic002G362000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.