Gene annotation
Transcriptome id Sobic.002G362000.1
Synonym Sb02g038210
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
vesicle transport protein GOT1B, putative, expressed
UniProt C5XD65
Pfam PF04178
Panther DB PTHR21493 PTHR21493:SF149
NCBI CDD KOG1743; Ferric reductase-like proteins
KEGG Orthology -
Gene Ontology GO:0016192; vesicle-mediated transport


Orthologs (automatic annotation)
TAIR AT5G01430 : Got1/Sft2-like vescicle transport protein family
RAP-DB (Rice) LOC_Os03g11100.1 : vesicle transport protein GOT1B, putative, expressed
MaizeGDB (Corn) Zm00025a048631
Brachypodium KQK15440
Barley HORVU2Hr1G034610.1 , HORVU2Hr1G034610.5 , HORVU2Hr1G034610.2 , HORVU2Hr1G034610.3 , HORVU2Hr1G034610.4
Wheat TraesCS2D02G191300 , TraesCS2B02G210100
Populus PNT28527


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G262300 coiled-coil domain-containing protein 90A, mitochondrial precursor, putative, expressed -
2 Sobic.001G308700 ATG1, putative, expressed -
3 Sobic.006G239300 thiamine-repressible mitochondrial transport protein THI74, putative, expressed K15289: solute carrier family 35, member F5
4 Sobic.004G123000 expressed protein -
5 Sobic.001G513300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@protein-methionine-S-oxide reductase, putative, expressed -
6 Sobic.002G183400 heavy metal-associated domain containing protein, expressed -
7 Sobic.004G259600 slowmo homolog, putative, expressed -
8 Sobic.009G063900 expressed protein -
9 Sobic.003G273000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@hydrolase, putative, expressed K14664: IAA-amino acid hydrolase
10 Sobic.009G217000 chaperone protein dnaJ 10, putative, expressed -
11 Sobic.003G300800 GA inactivating enzyme(PubMedID : 24151305)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Up-regulation in phyB-1 mutant(PubMedID : 26893475)@Expressed in older stem(PubMedID : 28649278)@gibberellin 2-beta-dioxygenase, putative, expressed K04125: gibberellin 2beta-dioxygenase
12 Sobic.001G067601 - K17553: protein phosphatase 1 regulatory subunit 11
13 Sobic.007G107850 - -
14 Sobic.004G075100 - -
15 Sobic.003G191500 protein transport protein Sec61 subunit beta, putative, expressed K09481: SEC61B, protein transport protein SEC61 subunit beta
16 Sobic.002G104900 B12D protein, putative, expressed -
17 Sobic.004G325700 CYPRO4, putative, expressed -
18 Sobic.006G131400 expressed protein -
19 Sobic.009G183300 glycerol-3-phosphate dehydrogenase, putative, expressed K00006: glycerol-3-phosphate dehydrogenase (NAD+)
20 Sobic.001G101500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@endoplasmic oxidoreductin-1 precursor, putative, expressed K10950: ERO1-like protein alpha


Gene co-expression network
sample Sobic002G362000 Sobic002G362000 Sobic010G262300 Sobic010G262300 Sobic002G362000--Sobic010G262300 Sobic001G308700 Sobic001G308700 Sobic002G362000--Sobic001G308700 Sobic006G239300 Sobic006G239300 Sobic002G362000--Sobic006G239300 Sobic004G123000 Sobic004G123000 Sobic002G362000--Sobic004G123000 Sobic001G513300 Sobic001G513300 Sobic002G362000--Sobic001G513300 Sobic002G183400 Sobic002G183400 Sobic002G362000--Sobic002G183400 Sobic004G259600 Sobic004G259600 Sobic002G362000--Sobic004G259600 Sobic009G063900 Sobic009G063900 Sobic002G362000--Sobic009G063900 Sobic003G273000 Sobic003G273000 Sobic002G362000--Sobic003G273000 Sobic010G262300--Sobic006G239300 Sobic010G262300--Sobic001G308700 Sobic010G262300--Sobic002G362000 Sobic004G030501 Sobic004G030501 Sobic010G262300--Sobic004G030501 Sobic001G148700 Sobic001G148700 Sobic010G262300--Sobic001G148700 Sobic010G262300--Sobic004G123000 Sobic006G118400 Sobic006G118400 Sobic010G262300--Sobic006G118400 Sobic001G067601 Sobic001G067601 Sobic010G262300--Sobic001G067601 Sobic010G262300--Sobic001G513300 Sobic001G533300 Sobic001G533300 Sobic001G308700--Sobic001G533300 Sobic001G308700--Sobic001G513300 Sobic008G129000 Sobic008G129000 Sobic001G308700--Sobic008G129000 Sobic009G217000 Sobic009G217000 Sobic001G308700--Sobic009G217000 Sobic001G308700--Sobic010G262300 Sobic001G308700--Sobic002G362000 Sobic001G308700--Sobic001G067601 Sobic001G224400 Sobic001G224400 Sobic001G308700--Sobic001G224400 Sobic003G209000 Sobic003G209000 Sobic001G308700--Sobic003G209000 Sobic006G239300--Sobic010G262300 Sobic006G239300--Sobic004G123000 Sobic010G153100 Sobic010G153100 Sobic006G239300--Sobic010G153100 Sobic003G358300 Sobic003G358300 Sobic006G239300--Sobic003G358300 Sobic001G066700 Sobic001G066700 Sobic006G239300--Sobic001G066700 Sobic001G389900 Sobic001G389900 Sobic006G239300--Sobic001G389900 Sobic006G062800 Sobic006G062800 Sobic006G239300--Sobic006G062800 Sobic003G072300 Sobic003G072300 Sobic006G239300--Sobic003G072300 Sobic006G239300--Sobic002G362000 Sobic009G054000 Sobic009G054000 Sobic004G123000--Sobic009G054000 Sobic004G123000--Sobic006G239300 Sobic001G350600 Sobic001G350600 Sobic004G123000--Sobic001G350600 Sobic004G123000--Sobic003G209000 Sobic002G296200 Sobic002G296200 Sobic004G123000--Sobic002G296200 Sobic006G013000 Sobic006G013000 Sobic004G123000--Sobic006G013000 Sobic003G155400 Sobic003G155400 Sobic004G123000--Sobic003G155400 Sobic004G159000 Sobic004G159000 Sobic004G123000--Sobic004G159000 Sobic001G404800 Sobic001G404800 Sobic004G123000--Sobic001G404800 Sobic001G513300--Sobic003G273000 Sobic004G228700 Sobic004G228700 Sobic001G513300--Sobic004G228700 Sobic007G016100 Sobic007G016100 Sobic001G513300--Sobic007G016100 Sobic001G513300--Sobic001G308700 Sobic010G031000 Sobic010G031000 Sobic001G513300--Sobic010G031000 Sobic002G136700 Sobic002G136700 Sobic001G513300--Sobic002G136700 Sobic001G508466 Sobic001G508466 Sobic001G513300--Sobic001G508466 Sobic001G295100 Sobic001G295100 Sobic001G513300--Sobic001G295100 Sobic001G513300--Sobic002G362000 Sobic002G183400--Sobic004G228700 Sobic002G183400--Sobic008G129000 Sobic001G437000 Sobic001G437000 Sobic002G183400--Sobic001G437000 Sobic001G282900 Sobic001G282900 Sobic002G183400--Sobic001G282900 Sobic002G183400--Sobic001G513300 Sobic010G028200 Sobic010G028200 Sobic002G183400--Sobic010G028200 Sobic002G183400--Sobic002G362000 Sobic002G183400--Sobic002G136700 Sobic002G183400--Sobic004G123000 Sobic004G247200 Sobic004G247200 Sobic004G259600--Sobic004G247200 Sobic002G348100 Sobic002G348100 Sobic004G259600--Sobic002G348100 Sobic003G063200 Sobic003G063200 Sobic004G259600--Sobic003G063200 Sobic005G168100 Sobic005G168100 Sobic004G259600--Sobic005G168100 Sobic001G055600 Sobic001G055600 Sobic004G259600--Sobic001G055600 Sobic009G232900 Sobic009G232900 Sobic004G259600--Sobic009G232900 Sobic002G372400 Sobic002G372400 Sobic004G259600--Sobic002G372400 Sobic010G204600 Sobic010G204600 Sobic004G259600--Sobic010G204600 Sobic005G028700 Sobic005G028700 Sobic004G259600--Sobic005G028700 Sobic006G275200 Sobic006G275200 Sobic009G063900--Sobic006G275200 Sobic001G097600 Sobic001G097600 Sobic009G063900--Sobic001G097600 Sobic002G393000 Sobic002G393000 Sobic009G063900--Sobic002G393000 Sobic003G086600 Sobic003G086600 Sobic009G063900--Sobic003G086600 Sobic004G280200 Sobic004G280200 Sobic009G063900--Sobic004G280200 Sobic004G205100 Sobic004G205100 Sobic009G063900--Sobic004G205100 Sobic009G183400 Sobic009G183400 Sobic009G063900--Sobic009G183400 Sobic001G405500 Sobic001G405500 Sobic009G063900--Sobic001G405500 Sobic001G309600 Sobic001G309600 Sobic009G063900--Sobic001G309600 Sobic003G273000--Sobic001G513300 Sobic004G232500 Sobic004G232500 Sobic003G273000--Sobic004G232500 Sobic009G069600 Sobic009G069600 Sobic003G273000--Sobic009G069600 Sobic003G273000--Sobic010G031000 Sobic004G159400 Sobic004G159400 Sobic003G273000--Sobic004G159400 Sobic003G273000--Sobic006G118400 Sobic003G273000--Sobic001G508466 Sobic003G273000--Sobic001G295100 Sobic010G216400 Sobic010G216400 Sobic003G273000--Sobic010G216400
Octagon: transcription factors


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